BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3514
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 169 bits (427), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 102/142 (71%), Gaps = 1/142 (0%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
+RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LF
Sbjct: 411 QRCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
EGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
S PWD+ V LC NVK+R+TREC
Sbjct: 531 SAPWDRVVDLCRNVKERITREC 552
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
+RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LF
Sbjct: 398 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLF 457
Query: 64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
EGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD +YY IG+SFET
Sbjct: 458 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFET 517
Query: 124 SVPWDKTVLLCINVKKRLTRECTGR 148
S PWD+ + LC NVK+R+ REC R
Sbjct: 518 SAPWDRVIDLCRNVKERIRRECKER 542
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
+RC P+SIRL+DN Q + G +P DGLKK Y+TK GF +++ AT+LF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
EGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+SFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 124 SVPWDKTVLLCINVKKRLTREC 145
S PWD+ V LC NVK+R+ REC
Sbjct: 531 SAPWDRVVDLCRNVKERIRREC 552
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLF 63
+RC P+SIRL+DN Q + G +P DG KK Y+TK GF +++ AT+LF
Sbjct: 397 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGFKKFYITKFKGFDPNQISVATLLF 456
Query: 64 EGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 123
EGD E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY +G+SFET
Sbjct: 457 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGESFET 516
Query: 124 SVPWDKTVLLCINVKKRLTRECTGR 148
S PWD+ + LC NVK+R+ REC R
Sbjct: 517 SAPWDRVIDLCRNVKERIRRECKER 541
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 100/144 (69%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
RRCQP+S+RL+DN Q GQ +P+ + + D +K+ YVT G +++CAAT+LFE
Sbjct: 364 RRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMKQRYVTSWKGIDLNQICAATLLFE 423
Query: 65 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
GD +DV+ E IY IA+++ G PAG NG RGY+LT++IAYIRDF + +SFETS
Sbjct: 424 GDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAESFETS 483
Query: 125 VPWDKTVLLCINVKKRLTRECTGR 148
VPWD+ LLC +VK+R+ EC+ R
Sbjct: 484 VPWDRCSLLCRSVKQRVVSECSKR 507
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 137 bits (344), Expect = 3e-32, Method: Composition-based stats.
Identities = 64/153 (41%), Positives = 101/153 (66%), Gaps = 3/153 (1%)
Query: 4 VRRCQPSSIRLVDNVQLKAGQFFR-PDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVL 62
++RCQP+S+RL+DN Q GQ + + L + K+Y+T GF+ DE+CAAT +
Sbjct: 339 IQRCQPASLRLMDNDQFVMGQALKVASDSWWADLKSSVSKMYITSWKGFKVDEICAATCV 398
Query: 63 FEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 122
+EG+ E+V +E+++ +A+++ G+ G NG+ GY LT+ IAY+RD ++ +G+SFE
Sbjct: 399 YEGNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFE 458
Query: 123 TSVPWDKTVLLCINVKKRLTRECTGRWL--PVL 153
TSVPWDK + LC NVK+ + RE + + PVL
Sbjct: 459 TSVPWDKVLSLCRNVKELMKREAKAQGVTHPVL 491
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum
GN=eapA PE=1 SV=1
Length = 611
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 9 PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE 68
P+ IR+ D + + ++P G + T + K Y+ I F +C + + FEG +
Sbjct: 348 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 407
Query: 69 DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWD 128
V + ++ I + G + G+ Y + YIRDF D+ D ET+V +
Sbjct: 408 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 467
Query: 129 KTVLLCINVKKRLTRECTGRWLPVLV 154
L + K+ + + +P +
Sbjct: 468 NLQTLWKDAKQTFVKHFKDQGIPAWI 493
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%)
Query: 3 TVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVL 62
T + P ++RL D + D G + K Y+ + G+ ++ V
Sbjct: 332 TRKGIHPCTMRLYDEDDTRLSFAASTDSGLVSTFFSKCFKKYIATVKGWNLSKISLVVVG 391
Query: 63 FEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 122
FEG ++ + + +G G G Y + Y+RDFA + F D FE
Sbjct: 392 FEGTKAQTNCQRSELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFE 451
Query: 123 TSVPWDKTVLLCINVKKRLT 142
TSV + + VKK
Sbjct: 452 TSVLYTDAIHCWRAVKKSFA 471
>sp|Q13E22|MNME_RHOPS tRNA modification GTPase MnmE OS=Rhodopseudomonas palustris (strain
BisB5) GN=mnmE PE=3 SV=2
Length = 460
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 84 YGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 132
+GG A E + RG L +IA I DFA Y+ G++ S +T+L
Sbjct: 357 WGGNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLL 405
>sp|Q1DFA7|GSA_MYXXD Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxococcus xanthus
(strain DK 1622) GN=hemL PE=3 SV=1
Length = 431
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 28 PDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG- 86
P PGYLE L +K V +L DE+ L G +++ + + ++AK GG
Sbjct: 217 PKPGYLEGLQALCQKHGVLLVL----DEVMTGFRLSRGGAQELYGLKPDLTTMAKVIGGG 272
Query: 87 IPAGESNGRRGYM 99
+P G GRR M
Sbjct: 273 MPMGAYGGRRDIM 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,617,913
Number of Sequences: 539616
Number of extensions: 2728309
Number of successful extensions: 4767
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4752
Number of HSP's gapped (non-prelim): 12
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)