Query psy3514
Match_columns 159
No_of_seqs 106 out of 280
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:36:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 100.0 3.6E-39 7.7E-44 278.2 5.2 153 3-155 364-517 (613)
2 PF02913 FAD-oxidase_C: FAD li 99.2 2.2E-11 4.7E-16 96.6 3.7 123 3-145 26-155 (248)
3 TIGR00387 glcD glycolate oxida 98.7 5.3E-08 1.2E-12 85.3 8.6 118 3-144 198-320 (413)
4 PRK11230 glycolate oxidase sub 98.4 1.7E-06 3.6E-11 78.0 10.2 114 4-141 256-374 (499)
5 PLN02805 D-lactate dehydrogena 98.3 7E-06 1.5E-10 75.0 11.2 114 4-142 333-452 (555)
6 COG3286 Uncharacterized protei 91.4 1 2.2E-05 36.5 7.0 86 59-144 39-135 (204)
7 PF09840 DUF2067: Uncharacteri 73.5 18 0.00039 29.0 7.0 87 58-144 35-132 (190)
8 KOG2872|consensus 57.9 17 0.00036 31.6 4.2 32 100-158 226-257 (359)
9 KOG4179|consensus 36.2 14 0.00031 33.5 0.5 20 109-129 510-529 (568)
10 cd00248 Mth938-like Mth938-lik 27.8 25 0.00054 25.3 0.5 53 87-156 56-108 (109)
11 PF12738 PTCB-BRCT: twin BRCT 27.5 35 0.00075 21.4 1.1 27 57-89 2-28 (63)
12 COG2723 BglB Beta-glucosidase/ 27.0 46 0.001 30.3 2.2 52 106-157 61-121 (460)
13 COG3915 Uncharacterized protei 26.9 46 0.001 25.7 1.8 42 116-157 46-88 (155)
14 PRK12378 hypothetical protein; 24.3 1.3E+02 0.0029 24.8 4.3 65 69-134 102-181 (235)
15 COG1071 AcoA Pyruvate/2-oxoglu 24.0 2.1E+02 0.0045 25.3 5.6 74 63-145 228-323 (358)
16 PRK13511 6-phospho-beta-galact 23.3 60 0.0013 29.3 2.2 52 106-157 56-115 (469)
17 PF14257 DUF4349: Domain of un 21.9 1E+02 0.0022 25.2 3.1 77 68-144 59-144 (262)
18 PLN02998 beta-glucosidase 21.1 72 0.0016 29.1 2.3 52 106-157 84-143 (497)
19 PRK09589 celA 6-phospho-beta-g 21.0 90 0.002 28.3 2.9 52 106-157 69-129 (476)
20 PF02662 FlpD: Methyl-viologen 21.0 98 0.0021 22.7 2.6 47 95-143 72-122 (124)
21 cd05560 Xcc1710_like Xcc1710_l 20.6 38 0.00081 24.4 0.3 48 97-156 61-108 (109)
22 CHL00123 rps6 ribosomal protei 20.1 1.7E+02 0.0038 20.5 3.7 63 57-124 10-72 (97)
No 1
>KOG1233|consensus
Probab=100.00 E-value=3.6e-39 Score=278.20 Aligned_cols=153 Identities=47% Similarity=0.891 Sum_probs=148.2
Q ss_pred ccCCCCCCeeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHH
Q psy3514 3 TVRRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA 81 (159)
Q Consensus 3 aq~~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~ 81 (159)
|.++++|+++||+||+||.|+++|+|. +++++.++++++++|+++|||||.+++|.+++.|||+.++|+++++++++|+
T Consensus 364 A~qRCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdre~V~qhE~~~y~iA 443 (613)
T KOG1233|consen 364 AIQRCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDREEVDQHEERLYKIA 443 (613)
T ss_pred HHHhcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccHHHHHHHHHHHHHHH
Confidence 567999999999999999999999998 6999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEE
Q psy3514 82 KRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVK 155 (159)
Q Consensus 82 ~~~GG~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~ 155 (159)
.+++|+..|..+|+.+|.++|.++|+||+.+.+|+++|+|||++|||++..||++|+++++++|+++|+...++
T Consensus 444 ekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~ 517 (613)
T KOG1233|consen 444 EKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVL 517 (613)
T ss_pred HHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876554
No 2
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.16 E-value=2.2e-11 Score=96.62 Aligned_cols=123 Identities=24% Similarity=0.260 Sum_probs=95.6
Q ss_pred ccCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChH-HhHhHHH-HHHHH
Q psy3514 3 TVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE-DVKNNED-KIYSI 80 (159)
Q Consensus 3 aq~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~-~V~~~~~-~~~~I 80 (159)
.++++.|+.++|+|+.+++......+. .......|++++.|+|+.+ .++.+.+ .+.++
T Consensus 26 ~~~g~~p~a~el~d~~~~~~~~~~~~~--------------------~~~~~~~~~llv~~~g~~~~~~~~~~~~~i~~~ 85 (248)
T PF02913_consen 26 MQSGIIPSAIELLDSAALKLALEHWGE--------------------PLPPEGGAVLLVEFEGSDEEAVEEQLEAEIEEI 85 (248)
T ss_dssp CHHCSSCCECCCCHHHHHHHHHHSEEE--------------------TSSTTTSEEEEEECCCHHHCCHHHHHHHHHHHH
T ss_pred HHcCCCceEEeeeCHHHHHHHHhhcCC--------------------CccCCcccEEEEEECCCcHHHHHHHHHHHHHHH
Confidence 356899999999999999766543221 1223345899999999994 5666666 78888
Q ss_pred HHHcCCCc-----CCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHH
Q psy3514 81 AKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 145 (159)
Q Consensus 81 ~~~~GG~~-----~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~ 145 (159)
++++|+.. -.+...+.|..-++..||+++...+.|...+++|+++||++++++++.+++.+.+..
T Consensus 86 ~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~ 155 (248)
T PF02913_consen 86 CKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREYG 155 (248)
T ss_dssp HCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHCT
T ss_pred HhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhcc
Confidence 88887764 112335778877777789999999999999999999999999999999988777764
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.71 E-value=5.3e-08 Score=85.33 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=85.5
Q ss_pred ccCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHH
Q psy3514 3 TVRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAK 82 (159)
Q Consensus 3 aq~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~ 82 (159)
.|+++.|+.++++|+.+...... +. ..+...+..+++++.|+|+.++++.+.+++.++++
T Consensus 198 ~~~~~~p~a~el~d~~~~~~~~~------------------~~--~~~~p~~~~~~l~v~~~g~~~~~~~~~~~~~~~~~ 257 (413)
T TIGR00387 198 IAAGIIPAGMEFLDNLSIKAVED------------------IS--GIGLPKDAGAILLVEIDGVHEAVERDEEKIEQICR 257 (413)
T ss_pred HhcCCCcEEEEccCHHHHHHHHH------------------hc--CCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 35789999999999988753110 00 01222234588999999999999999999999999
Q ss_pred HcCCCcC----C-ccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHH
Q psy3514 83 RYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 144 (159)
Q Consensus 83 ~~GG~~~----G-~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~ 144 (159)
++|+... + +...+.|...++..|++++.. ...+ +.|+++||++++++++.+++.+.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~~~~~~~~~~~~ 320 (413)
T TIGR00387 258 KNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEALRGIADIARKY 320 (413)
T ss_pred hCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHHHHHHHHHHHHc
Confidence 9988533 1 235567888777789988743 2222 3579999999999999997766543
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=98.42 E-value=1.7e-06 Score=78.02 Aligned_cols=114 Identities=11% Similarity=0.181 Sum_probs=79.4
Q ss_pred cCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHH
Q psy3514 4 VRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKR 83 (159)
Q Consensus 4 q~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~ 83 (159)
++++.|+.++++|+....... .++. .+...+..+++++.|+|+++.++.+.+++.+++++
T Consensus 256 ~~~~~p~~~el~d~~~~~~~~------------------~~~~--~~~p~~~~~~ll~e~~g~~~~v~~~~~~l~~~~~~ 315 (499)
T PRK11230 256 AAGIIPGGLEMMDNLSIRAAE------------------DFIH--AGYPVDAEAILLCELDGVESDVQEDCERVNDILLK 315 (499)
T ss_pred hcCCCcEEEEeeCHHHHHHHH------------------HhcC--CCCCCCcceEEEEEecCCchHHHHHHHHHHHHHHh
Confidence 578899999999998764210 0110 11111234788999999999999999999999999
Q ss_pred cCCCcCC-----ccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHH
Q psy3514 84 YGGIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL 141 (159)
Q Consensus 84 ~GG~~~G-----~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al 141 (159)
+|+..+. +...+.|..-+...|+++.. ..+++. .+++|||++++++++.+++..
T Consensus 316 ~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~~~~~~~~~ 374 (499)
T PRK11230 316 AGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGVLEGIARLS 374 (499)
T ss_pred cCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHHHHHHHHHH
Confidence 9975332 12335676633445887763 334444 499999999999999997644
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=98.29 E-value=7e-06 Score=75.02 Aligned_cols=114 Identities=18% Similarity=0.088 Sum_probs=77.4
Q ss_pred cCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHH
Q psy3514 4 VRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKR 83 (159)
Q Consensus 4 q~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~ 83 (159)
++++.|+.++++|+.+...-.. +.. .++. ..|++++.|+|++++++.+.+.+.+|+++
T Consensus 333 ~~g~~psa~ElmD~~~~~~~~~------------------~~~--~~~p--~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~ 390 (555)
T PLN02805 333 LSGIQVSRVELLDEVQIRAINM------------------ANG--KNLP--EAPTLMFEFIGTEAYAREQTLIVQKIASK 390 (555)
T ss_pred hCCCCcEEEEEECHHHHHHHHH------------------hcC--CCCC--cceEEEEEEecCcHHHHHHHHHHHHHHHh
Confidence 5689999999999988753210 000 0111 23899999999999999999999999999
Q ss_pred cCCC--cCCccc---hhhhhhhhhhh-hhhhhhhhccccceeeeecccccCChHHHHHHHHHHHH
Q psy3514 84 YGGI--PAGESN---GRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 142 (159)
Q Consensus 84 ~GG~--~~G~~~---g~~W~~~rF~~-pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~ 142 (159)
+|+. .+.+.+ .+.|. .|-.. +.+.. ...+....+.+++||||+++++++.+++.+.
T Consensus 391 ~g~~~~~~a~~~~e~~~lW~-~R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~ 452 (555)
T PLN02805 391 HNGSDFVFAEEPEAKKELWK-IRKEALWACFA--MEPKYEAMITDVCVPLSHLAELISRSKKELD 452 (555)
T ss_pred CCCceEEEeCCHHHHHHHHH-HHHHHHHHHhh--cCCCCceeEEEEEEEHHHHHHHHHHHHHHHH
Confidence 9985 222332 44566 34333 22211 1224445577999999999999999976654
No 6
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.37 E-value=1 Score=36.48 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=62.0
Q ss_pred EEEEEeCChHHhHhHHHHHHHHHHHcCCCcCCccchh-----hhhhhhhhh--hhhhhhhhcccccee----eeeccccc
Q psy3514 59 ATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGR-----RGYMLTYII--AYIRDFACDYYFIGD----SFETSVPW 127 (159)
Q Consensus 59 ~~~gfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~-----~W~~~rF~~--pYlRd~l~d~G~~~D----T~ETAv~W 127 (159)
+.+-..|.+++++.....+.++.+..-+..-+...|- --...+=++ +-|+|.|--+|+=++ -++|++||
T Consensus 39 vkV~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~ 118 (204)
T COG3286 39 VKVNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPW 118 (204)
T ss_pred EEEEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCH
Confidence 4555778899999999999998887776544433331 111222223 278999999998765 58999999
Q ss_pred CChHHHHHHHHHHHHHH
Q psy3514 128 DKTVLLCINVKKRLTRE 144 (159)
Q Consensus 128 s~~~~l~~~V~~al~~~ 144 (159)
|-+..+.+++.+..+.+
T Consensus 119 ~ev~E~vreLse~~~E~ 135 (204)
T COG3286 119 SEVVELVRELSEVYREA 135 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988777665
No 7
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=73.54 E-value=18 Score=28.96 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=61.7
Q ss_pred EEEEEEeCChHHhHhHHHHHHHHHHHcCCCcCCccch---hhhhh----hhhhhhhhhhhhhccccce----eeeecccc
Q psy3514 58 AATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNG---RRGYM----LTYIIAYIRDFACDYYFIG----DSFETSVP 126 (159)
Q Consensus 58 l~~~gfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g---~~W~~----~rF~~pYlRd~l~d~G~~~----DT~ETAv~ 126 (159)
-+.+-..|++.+++.....+.++.+...+..-+.+.. -.+.. ..|..|-|-|.|--.|+=+ |.+.|++|
T Consensus 35 ~l~I~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a~ 114 (190)
T PF09840_consen 35 SLKIEIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDAP 114 (190)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecCC
Confidence 3666778899899999888888877665532222111 11111 4555568888888888765 58999999
Q ss_pred cCChHHHHHHHHHHHHHH
Q psy3514 127 WDKTVLLCINVKKRLTRE 144 (159)
Q Consensus 127 Ws~~~~l~~~V~~al~~~ 144 (159)
|+.+.++.+++.++....
T Consensus 115 ~eev~~l~~~Lse~~~e~ 132 (190)
T PF09840_consen 115 LEEVVELAERLSEIYKEL 132 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998877643
No 8
>KOG2872|consensus
Probab=57.88 E-value=17 Score=31.60 Aligned_cols=32 Identities=13% Similarity=0.341 Sum_probs=24.2
Q ss_pred hhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEee
Q psy3514 100 LTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLY 158 (159)
Q Consensus 100 ~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~~~~ 158 (159)
.+|..||||+ |.+++++.|.+.+.+.+=|.+|
T Consensus 226 ~e~s~PYl~~---------------------------I~~~Vk~rl~~~~~~~vPmi~f 257 (359)
T KOG2872|consen 226 EEFSLPYLRQ---------------------------IAEAVKKRLPELGLAPVPMILF 257 (359)
T ss_pred HHhhhHHHHH---------------------------HHHHHHHhhhhhcCCCCceEEE
Confidence 3788899997 6666677777777777777776
No 9
>KOG4179|consensus
Probab=36.21 E-value=14 Score=33.49 Aligned_cols=20 Identities=35% Similarity=0.729 Sum_probs=16.4
Q ss_pred hhhhccccceeeeecccccCC
Q psy3514 109 DFACDYYFIGDSFETSVPWDK 129 (159)
Q Consensus 109 d~l~d~G~~~DT~ETAv~Ws~ 129 (159)
..--|.|++.|| ||++.|||
T Consensus 510 hytg~~gylsdt-ets~~w~~ 529 (568)
T KOG4179|consen 510 HYTGDSGYLSDT-ETSQQWDN 529 (568)
T ss_pred eecCCCccccCc-cccccccc
Confidence 345578999998 99999995
No 10
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=27.75 E-value=25 Score=25.31 Aligned_cols=53 Identities=11% Similarity=0.000 Sum_probs=35.9
Q ss_pred CcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEE
Q psy3514 87 IPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKL 156 (159)
Q Consensus 87 ~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~~ 156 (159)
+.+|+ +...+|--|-+++.+.++|+-+|.+.|.. .-.. -+.|.++|-++...|
T Consensus 56 liiGT-----G~~~~~~~~~~~~~l~~~gI~vE~m~T~a----AcrT--------yNiL~~EgR~Vaaal 108 (109)
T cd00248 56 LLIGT-----GAEIAFLPRALRAALRAAGIGVEVMSTGA----ACRT--------YNVLLSEGRRVAAAL 108 (109)
T ss_pred EEEcC-----CCCCCcCCHHHHHHHHHcCCeEEEeCcHH----HHHH--------HHHHHhCCcceEEEe
Confidence 34576 34456777899999999999999999972 1112 234556666665554
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=27.45 E-value=35 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=18.4
Q ss_pred eEEEEEEeCChHHhHhHHHHHHHHHHHcCCCcC
Q psy3514 57 CAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA 89 (159)
Q Consensus 57 cl~~~gfEG~~~~V~~~~~~~~~I~~~~GG~~~ 89 (159)
++++-||++.+ +..+.+++..+||...
T Consensus 2 ~i~~sg~~~~~------~~~l~~~i~~~Gg~~~ 28 (63)
T PF12738_consen 2 VICFSGFSGKE------RSQLRKLIEALGGKYS 28 (63)
T ss_dssp EEEEEEB-TTT------CCHHHHHHHCTT-EEE
T ss_pred EEEECCCCHHH------HHHHHHHHHHCCCEEe
Confidence 45677787755 6678889999999654
No 12
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=26.97 E-value=46 Score=30.32 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=38.7
Q ss_pred hhhhhhhccccceeeeecccccCChHHHHH---------HHHHHHHHHHhccCCCcEEEEe
Q psy3514 106 YIRDFACDYYFIGDSFETSVPWDKTVLLCI---------NVKKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 106 YlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~---------~V~~al~~~~~~~g~~~~v~~~ 157 (159)
|=.|..+-.-+...++=||+.|||+-+==. +-...|-++|.++|+.++|.|-
T Consensus 61 YkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~ 121 (460)
T COG2723 61 YKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY 121 (460)
T ss_pred hHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 456766666677799999999999866110 1345668999999999998873
No 13
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.95 E-value=46 Score=25.73 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=27.3
Q ss_pred cceeeeecccccCChHHHHHHHH-HHHHHHHhccCCCcEEEEe
Q psy3514 116 FIGDSFETSVPWDKTVLLCINVK-KRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 116 ~~~DT~ETAv~Ws~~~~l~~~V~-~al~~~~~~~g~~~~v~~~ 157 (159)
.-.+|+||-+||-.-..=.+.|+ +++-+.+.+++..+.|+.|
T Consensus 46 l~~~T~ete~Pw~~gn~rf~Gvsls~Ll~~l~ak~tslt~iAL 88 (155)
T COG3915 46 LPDETIETETPWTQGNTRFKGVSLSALLAWLGAKQTSLTVIAL 88 (155)
T ss_pred CCcceEEEecCcccCceeecceeHHHHHHHhhccCcceEEEEe
Confidence 45699999999965554455553 3445556666666666654
No 14
>PRK12378 hypothetical protein; Provisional
Probab=24.32 E-value=1.3e+02 Score=24.77 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=35.2
Q ss_pred HhHhHHHHHHHHHHHcCCCcCCccchhhhhhhh---hhhh-----hhhhhhhcccccee-------eeecccccCChHHH
Q psy3514 69 DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLT---YIIA-----YIRDFACDYYFIGD-------SFETSVPWDKTVLL 133 (159)
Q Consensus 69 ~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~r---F~~p-----YlRd~l~d~G~~~D-------T~ETAv~Ws~~~~l 133 (159)
-..+....++.++++|||. +|+...-+|.--| +.++ -+-+.+++.|.-+| ++|--|+.+.+..+
T Consensus 102 N~nRt~~~vr~~f~K~gg~-l~~~gsv~~~Fe~kG~i~i~~~~~d~~~e~aieaGa~~edv~~~~~~~~i~t~p~~~~~v 180 (235)
T PRK12378 102 NVNRTVANVRSAFNKNGGN-LGTSGSVAFMFDHKGVFVFEGDDEDELLEALIDADVDVEDVEEEEGTITVYTDPTDFHKV 180 (235)
T ss_pred CHHHHHHHHHHHHhhcCCe-ECCCCceeeeeecceEEEeCCCCHHHHHHHHHhCCCCcccccccCCeEEEEECHHHHHHH
Confidence 3556788889999999995 4443233443322 2221 34455667766222 34555554444443
Q ss_pred H
Q psy3514 134 C 134 (159)
Q Consensus 134 ~ 134 (159)
.
T Consensus 181 ~ 181 (235)
T PRK12378 181 K 181 (235)
T ss_pred H
Confidence 3
No 15
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=24.00 E-value=2.1e+02 Score=25.27 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=51.5
Q ss_pred EeCCh-HHhHhHHHHHHHHHHHcCCCcC-------------C--------ccchhhhhhhhhhhhhhhhhhhccccceee
Q psy3514 63 FEGDP-EDVKNNEDKIYSIAKRYGGIPA-------------G--------ESNGRRGYMLTYIIAYIRDFACDYYFIGDS 120 (159)
Q Consensus 63 fEG~~-~~V~~~~~~~~~I~~~~GG~~~-------------G--------~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT 120 (159)
..|.+ -.|-...+.+.+.+++.+|=.+ + .+--+.|.. |=-++-+|++|.+.|++.|
T Consensus 228 VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~se- 305 (358)
T COG1071 228 VDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSE- 305 (358)
T ss_pred ECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCH-
Confidence 45654 5688889999999998888322 1 112266766 3334588999999999887
Q ss_pred eecccccCChHHHHHHHHHHHHHHH
Q psy3514 121 FETSVPWDKTVLLCINVKKRLTREC 145 (159)
Q Consensus 121 ~ETAv~Ws~~~~l~~~V~~al~~~~ 145 (159)
..+.++.+++++.|.++.
T Consensus 306 -------e~~~~i~~e~~~~V~ea~ 323 (358)
T COG1071 306 -------EELEAIEAEAKAEVDEAV 323 (358)
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 566777777777777643
No 16
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=23.30 E-value=60 Score=29.26 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=39.2
Q ss_pred hhhhhhhccccceeeeecccccCChHHH------HHHH--HHHHHHHHhccCCCcEEEEe
Q psy3514 106 YIRDFACDYYFIGDSFETSVPWDKTVLL------CINV--KKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 106 YlRd~l~d~G~~~DT~ETAv~Ws~~~~l------~~~V--~~al~~~~~~~g~~~~v~~~ 157 (159)
|-.|.-+-..+.++++=+|+.||||.+- -+.| ...|.++|.++|+.++|.|.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~ 115 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH 115 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 3566666667778999999999999874 1122 45678899999999999874
No 17
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.86 E-value=1e+02 Score=25.24 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=51.1
Q ss_pred HHhHhHHHHHHHHHHHcCCCcCCccc-------hhhhhhhhhhhh--hhhhhhhccccceeeeecccccCChHHHHHHHH
Q psy3514 68 EDVKNNEDKIYSIAKRYGGIPAGESN-------GRRGYMLTYIIA--YIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 138 (159)
Q Consensus 68 ~~V~~~~~~~~~I~~~~GG~~~G~~~-------g~~W~~~rF~~p--YlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~ 138 (159)
+.++...+.+.+++.++||...-+.. +......++++| .+.+|+.+.+=+.....-.+.=.++..=|..+.
T Consensus 59 ~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~ 138 (262)
T PF14257_consen 59 KDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLE 138 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHH
Confidence 56888899999999999996543322 344555667776 666666555544555555555567777777776
Q ss_pred HHHHHH
Q psy3514 139 KRLTRE 144 (159)
Q Consensus 139 ~al~~~ 144 (159)
.+++.-
T Consensus 139 arl~~l 144 (262)
T PF14257_consen 139 ARLKNL 144 (262)
T ss_pred HHHHHH
Confidence 666543
No 18
>PLN02998 beta-glucosidase
Probab=21.05 E-value=72 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=39.1
Q ss_pred hhhhhhhccccceeeeecccccCChHHH-----HH---HHHHHHHHHHhccCCCcEEEEe
Q psy3514 106 YIRDFACDYYFIGDSFETSVPWDKTVLL-----CI---NVKKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 106 YlRd~l~d~G~~~DT~ETAv~Ws~~~~l-----~~---~V~~al~~~~~~~g~~~~v~~~ 157 (159)
|-.|.-+-.-+.++++=+|+.||||-+- -+ +-...+.++|.++|+.++|.|.
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~ 143 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH 143 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 4566666666778999999999999773 11 1245678899999999999874
No 19
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=21.04 E-value=90 Score=28.27 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=39.3
Q ss_pred hhhhhhhccccceeeeecccccCChHHH------H-HH--HHHHHHHHHhccCCCcEEEEe
Q psy3514 106 YIRDFACDYYFIGDSFETSVPWDKTVLL------C-IN--VKKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 106 YlRd~l~d~G~~~DT~ETAv~Ws~~~~l------~-~~--V~~al~~~~~~~g~~~~v~~~ 157 (159)
|-.|.-+-..+-++++=+|+.||||-+- - +. -...|.++|.++|+.++|.|.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~ 129 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS 129 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4566666666778999999999999873 1 11 245778999999999999874
No 20
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.01 E-value=98 Score=22.75 Aligned_cols=47 Identities=2% Similarity=-0.051 Sum_probs=34.5
Q ss_pred hhhhhhhhhhhhhhhhhhccccceeeeec----ccccCChHHHHHHHHHHHHH
Q psy3514 95 RRGYMLTYIIAYIRDFACDYYFIGDSFET----SVPWDKTVLLCINVKKRLTR 143 (159)
Q Consensus 95 ~~W~~~rF~~pYlRd~l~d~G~~~DT~ET----Av~Ws~~~~l~~~V~~al~~ 143 (159)
..|.+.|+ ..+++.|-+.|+=-|-+++ +..|.++.+..+.+.+.|++
T Consensus 72 n~~a~~Rv--~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 72 NYRAEKRV--ERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred hHHHHHHH--HHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 35666655 6678888888888888887 77778888877777666653
No 21
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=20.61 E-value=38 Score=24.43 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEE
Q psy3514 97 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKL 156 (159)
Q Consensus 97 W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~~ 156 (159)
+...+|--|-+++.+.++|+-+|.+.|..- - +.-+.|..+|-++...|
T Consensus 61 G~~~~~~~~~~~~~l~~~gi~vE~m~T~~A----c--------rTyN~L~~EgR~V~Aal 108 (109)
T cd05560 61 GERQRFPPPALLAPLLARGIGVEVMDTQAA----C--------RTYNILMGEGRRVVAAL 108 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEECHHHH----H--------HHHHHHHhCCCcEEEEe
Confidence 455667778999999999999999999721 1 12344566666666554
No 22
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.10 E-value=1.7e+02 Score=20.47 Aligned_cols=63 Identities=8% Similarity=-0.002 Sum_probs=45.8
Q ss_pred eEEEEEEeCChHHhHhHHHHHHHHHHHcCCCcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecc
Q psy3514 57 CAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124 (159)
Q Consensus 57 cl~~~gfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETA 124 (159)
|+.++-=+.++++++...+.+.++..++||...- .+.|=..+|..| ++. ..+.-|+.=+|+..
T Consensus 10 ~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~---~~~wG~r~LAY~-I~k-~~~G~Yv~~~f~~~ 72 (97)
T CHL00123 10 TMYLLKPDLNEEELLKWIENYKKLLRKRGAKNIS---VQNRGKRKLSYK-INK-YEDGIYIQMNYSGN 72 (97)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE---EEeecCeeeeEE-cCC-CCEEEEEEEEEEEC
Confidence 6777767777899999999999999999986543 345777788766 233 44445666677764
Done!