Query psy3514
Match_columns 159
No_of_seqs 106 out of 280
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:37:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.8 5.1E-18 1.7E-22 153.0 12.2 151 4-154 340-490 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.7 2.2E-17 7.6E-22 150.3 11.5 149 3-151 409-558 (658)
3 1f0x_A DLDH, D-lactate dehydro 98.2 1.3E-07 4.5E-12 85.1 -0.2 93 48-144 381-480 (571)
4 1e8g_A Vanillyl-alcohol oxidas 98.0 3.3E-05 1.1E-09 68.9 10.6 130 4-143 301-449 (560)
5 3pm9_A Putative oxidoreductase 97.8 6E-05 2.1E-09 66.2 8.5 116 5-144 255-377 (476)
6 1wvf_A 4-cresol dehydrogenase 96.4 0.019 6.6E-07 50.4 10.2 128 4-143 269-418 (520)
7 2exr_A Cytokinin dehydrogenase 96.2 0.0013 4.5E-08 58.1 1.4 75 56-139 311-401 (524)
8 1hsk_A UDP-N-acetylenolpyruvoy 58.0 5.7 0.0002 32.6 2.7 39 55-93 270-309 (326)
9 1w1o_A Cytokinin dehydrogenase 48.3 7 0.00024 34.1 1.7 84 57-143 326-420 (534)
10 3r8j_A Heme-binding protein 2; 33.0 47 0.0016 25.7 4.2 48 55-106 137-186 (212)
11 2fvt_A Conserved hypothetical 32.9 10 0.00034 27.6 0.2 49 97-157 76-124 (135)
12 2ozl_A PDHE1-A type I, pyruvat 31.8 1.1E+02 0.0036 25.5 6.4 76 62-145 228-325 (365)
13 4b0y_A Heme-binding protein 2; 29.3 58 0.002 25.5 4.2 48 55-106 156-205 (227)
14 1l7b_A DNA ligase; BRCT, autos 28.9 33 0.0011 23.0 2.3 47 59-108 11-70 (92)
15 4ha4_A Beta-galactosidase; TIM 26.3 15 0.00051 32.0 0.2 51 107-157 64-150 (489)
16 2gm2_A Conserved hypothetical 26.0 13 0.00044 26.8 -0.2 49 97-157 73-121 (132)
17 3cpk_A Uncharacterized protein 24.3 53 0.0018 24.3 2.9 49 97-157 97-145 (150)
18 1uwi_A Beta-galactosidase; hyd 23.7 30 0.001 30.0 1.6 51 107-157 64-149 (489)
19 1zzk_A Heterogeneous nuclear r 22.7 75 0.0026 20.2 3.1 27 60-86 53-79 (82)
20 3vej_A Ubiquitin-like protein 22.0 22 0.00076 20.9 0.3 16 122-137 3-18 (41)
21 2ab1_A Hypothetical protein; H 20.7 26 0.0009 24.8 0.5 49 97-157 70-119 (122)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.75 E-value=5.1e-18 Score=152.99 Aligned_cols=151 Identities=22% Similarity=0.359 Sum_probs=128.4
Q ss_pred cCCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHH
Q psy3514 4 VRRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKR 83 (159)
Q Consensus 4 q~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~ 83 (159)
++++.|+.++|+|+.++.+.++..+.++....+.+.+.+.|+.+++++.....|++++.|+|++++|+.+.+++.++|++
T Consensus 340 ~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llve~~g~~~~v~~~~~~~~~~~~~ 419 (584)
T 2uuu_A 340 SSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSK 419 (584)
T ss_dssp HHTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred hcCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCCccEEEEEEEecChHHHHHHHHHHHHHHHH
Confidence 46899999999999999887776654433333334444556665667764456999999999999999999999999999
Q ss_pred cCCCcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEE
Q psy3514 84 YGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLV 154 (159)
Q Consensus 84 ~GG~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v 154 (159)
+||...++...+.|+..|+..||+|+.++++|.+.+++||+||||+++++++.+++.+.+.+.++|.++++
T Consensus 420 ~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l~~~~~~~g~~~~~ 490 (584)
T 2uuu_A 420 NAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWI 490 (584)
T ss_dssp TTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHHHhHHHhcCCeeEE
Confidence 99988888889999999999999999999999999999999999999999999999999999998888544
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.72 E-value=2.2e-17 Score=150.28 Aligned_cols=149 Identities=50% Similarity=0.979 Sum_probs=124.7
Q ss_pred ccCCCCCCeeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHH
Q psy3514 3 TVRRCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA 81 (159)
Q Consensus 3 aq~~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~ 81 (159)
+|+++.|+++||+|+.++++..++.+. ......+.++....++..++|++++..|++++.|||+.+.+..+.+.+.+++
T Consensus 409 ~~~~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~ 488 (658)
T 4bby_A 409 AKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIA 488 (658)
T ss_dssp HHTTCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHcCCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 367999999999999999998887765 3444555566667778888999988889999999999999999999999999
Q ss_pred HHcCCCcCCccchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCC
Q psy3514 82 KRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLP 151 (159)
Q Consensus 82 ~~~GG~~~G~~~g~~W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~ 151 (159)
+++||+..++..+++|+..||..||+|+..++.+...+++||++||++++++++++++.+.+.+.+.+..
T Consensus 489 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l~~~~~~~g~~ 558 (658)
T 4bby_A 489 AKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQ 558 (658)
T ss_dssp HTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887764
No 3
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=98.23 E-value=1.3e-07 Score=85.08 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=68.2
Q ss_pred hcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHcCCCcC--Cccchhhhhhhhhhhh----hhhhhhhc-cccceee
Q psy3514 48 ILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDS 120 (159)
Q Consensus 48 ~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~~GG~~~--G~~~g~~W~~~rF~~p----YlRd~l~d-~G~~~DT 120 (159)
+|||+....+.+++-|+|+..+. ..+.+.++++.++|... .+..+++|...||..+ ++|+...+ .| .+.+
T Consensus 381 ~~~~~~~~~~~llve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~ 457 (571)
T 1f0x_A 381 MKNWRDKYEHHLLLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILA 457 (571)
T ss_dssp HHHHHHHCSEEEEEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEE
T ss_pred hhcccccCceEEEEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceE
Confidence 34444323488999999987643 25666778888766433 4567888888999996 88887765 33 3689
Q ss_pred eecccccCChHHHHHHHHHHHHHH
Q psy3514 121 FETSVPWDKTVLLCINVKKRLTRE 144 (159)
Q Consensus 121 ~ETAv~Ws~~~~l~~~V~~al~~~ 144 (159)
+|||+||++++.+ +.+++.+.+.
T Consensus 458 ~Dvavp~~~l~~~-~~~~~~l~~~ 480 (571)
T 1f0x_A 458 LDIALRRNDTEWY-EHLPPEIDSQ 480 (571)
T ss_dssp EEEECCTTCSCCS-CCCCHHHHTT
T ss_pred EEEEecHHHhHHH-HHHHHHHHhh
Confidence 9999999999999 8888777654
No 4
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=98.00 E-value=3.3e-05 Score=68.92 Aligned_cols=130 Identities=7% Similarity=-0.145 Sum_probs=82.7
Q ss_pred cCCCCCCeeEeechhhhhhc-ccC----CC-CCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHH
Q psy3514 4 VRRCQPSSIRLVDNVQLKAG-QFF----RP-DPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKI 77 (159)
Q Consensus 4 q~~l~Pa~~RLsD~~Et~~~-lal----~~-~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~ 77 (159)
++++.|+.+.++|+.. ... +.. .+ ..+...... ..++. +++. ..|++++.|+|+++.|+.+.+++
T Consensus 301 ~~~~~p~~~el~d~~~-~~~~l~~~~~~~~~~~~~p~~~~----~~l~~---~~~~-~~~~l~~e~~g~~~~v~~~~~~i 371 (560)
T 1e8g_A 301 LGMALQNVPTIRHILL-DAAVLGDKRSYSSRTEPLSDEEL----DKIAK---QLNL-GRWNFYGALYGPEPIRRVLWETI 371 (560)
T ss_dssp HTTSSCSCCEEEEHHH-HHHHHCCGGGTCCCSSCCCHHHH----HHHHH---HHTC-CSEEEEEEEESCHHHHHHHHHHH
T ss_pred HcCCCcceeEEechHH-HhhhhhhhhhhccCCCCCCHHHH----HHHHh---hcCC-CceEEEEEEeCCHHHHHHHHHHH
Confidence 4689999999999985 221 110 01 000100000 11111 1222 23889999999999999999999
Q ss_pred HHHHHHcCCCcC--Cccc--hhhhhhhhhhh----hhhhhh---hhccccceeeeeccccc--CChHHHHHHHHHHHHH
Q psy3514 78 YSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW--DKTVLLCINVKKRLTR 143 (159)
Q Consensus 78 ~~I~~~~GG~~~--G~~~--g~~W~~~rF~~----pYlRd~---l~d~G~~~DT~ETAv~W--s~~~~l~~~V~~al~~ 143 (159)
.++++++|+..+ .+.+ .+.|.. |+.. |+++.. .|..|=...++++++|| ++++++++.+++.+.+
T Consensus 372 ~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~~~~~~~ 449 (560)
T 1e8g_A 372 KDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQE 449 (560)
T ss_dssp HHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCCHHHHHHHHHHHHHHHHH
Confidence 999999998543 3222 344554 7654 877754 23332235668999999 9999999999765433
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.80 E-value=6e-05 Score=66.18 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=79.0
Q ss_pred CCCCCCeeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHc
Q psy3514 5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY 84 (159)
Q Consensus 5 ~~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~~~I~~~~ 84 (159)
.++.|+.+.++|+...+.-....... ..++.+..+++++.|+|+.++++.+.+++.+++.++
T Consensus 255 ~g~~p~a~El~d~~~~~~~~~~~~~~------------------~~~~~~~~~~llve~~g~~~~~~~~~~~~~~~~~~~ 316 (476)
T 3pm9_A 255 AAGNLTSFELIAETPLDFSVRHANNR------------------DPLEARYPWYVLIELSSPRDDARAALESILERGFED 316 (476)
T ss_dssp HGGGEEEEEEEEHHHHHHHHHHTTCC------------------CCSSSCCSEEEEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred cCCCceEEEecCHHHHHHHHhccCCC------------------CCCCccCCeEEEEEEccCcHHHHHHHHHHHHHHHhc
Confidence 47889999999987765332110000 012222248999999999988988999999999999
Q ss_pred CCCcC---Cc---cchhhhhhhhhhh-hhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHH
Q psy3514 85 GGIPA---GE---SNGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 144 (159)
Q Consensus 85 GG~~~---G~---~~g~~W~~~rF~~-pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~ 144 (159)
|++.- .. ...+-|. .|-.. +.++ ..|. ..+.+++||||+++++++.+++.+.+.
T Consensus 317 g~~~~~~~a~~~~~~~~lW~-~R~~~~~~~~----~~g~-~~~~Dv~vP~~~l~~~~~~~~~~~~~~ 377 (476)
T 3pm9_A 317 GIVVDAAIANSVQQQQAFWK-LREEISPAQK----PEGG-SIKHDISVPVAAVPQFIEQANAAVVAL 377 (476)
T ss_dssp TCCCEEEECCSHHHHHHHHH-HHHTHHHHTG----GGCC-EECCEEECCGGGHHHHHHHHHHHHHHH
T ss_pred CCCcceEEeCCHHHHHHHHH-HHHHHHHHHh----hcCC-ceeEEEEeeHHHHHHHHHHHHHHHHHh
Confidence 87521 11 2234564 45444 3333 2343 689999999999999999998887776
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=96.42 E-value=0.019 Score=50.38 Aligned_cols=128 Identities=9% Similarity=-0.076 Sum_probs=70.6
Q ss_pred cCCCCCCeeEeechhhhhhcccCC-----CC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHH
Q psy3514 4 VRRCQPSSIRLVDNVQLKAGQFFR-----PD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKI 77 (159)
Q Consensus 4 q~~l~Pa~~RLsD~~Et~~~lal~-----~~-~~~~~~~~~~~~~~~~~~~rG~~~~~~cl~~~gfEG~~~~V~~~~~~~ 77 (159)
++++.|+.++++|+.......... .. ...-...... ++ ++... ..+++++.|+|++++++.+.+.+
T Consensus 269 ~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~-~~~~l~~~~~g~~~~v~~~~~~i 340 (520)
T 1wvf_A 269 MSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQ----MQ---KDTGM-GAWNLYAALYGTQEQVDVNWKIV 340 (520)
T ss_dssp HTTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHH----HH---HHHCC-CSEEEEEEEEESHHHHHHHHHHH
T ss_pred HcCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHH----HH---HhcCC-CceEEEEEEeCCHHHHHHHHHHH
Confidence 468999999999998443221111 00 0000000000 01 11111 23788888999999999999999
Q ss_pred HHHHHHcCCCcCCccchhhhhhhhhhhhhhhhhhh--------------c--cccceeeeecccccCChHHHHHHHHHHH
Q psy3514 78 YSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC--------------D--YYFIGDSFETSVPWDKTVLLCINVKKRL 141 (159)
Q Consensus 78 ~~I~~~~GG~~~G~~~g~~W~~~rF~~pYlRd~l~--------------d--~G~~~DT~ETAv~Ws~~~~l~~~V~~al 141 (159)
.++++++|+..+.. ..|.+ +-...++|..++ . .+.+.++.-..++|++++++++.+++.+
T Consensus 341 ~~~~~~~~~~~~~~---~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~l~~~~~~~~~~~ 416 (520)
T 1wvf_A 341 TDVFKKLGKGRIVT---QEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVL 416 (520)
T ss_dssp HHHHHHHTCCEEEE---HHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEe---cccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEeccccCCCHHHHHHHHHHHHHHH
Confidence 99999999864421 11111 112223332222 0 1223333444556699999998886655
Q ss_pred HH
Q psy3514 142 TR 143 (159)
Q Consensus 142 ~~ 143 (159)
.+
T Consensus 417 ~~ 418 (520)
T 1wvf_A 417 HK 418 (520)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=96.19 E-value=0.0013 Score=58.12 Aligned_cols=75 Identities=5% Similarity=-0.107 Sum_probs=57.7
Q ss_pred ceEEEEEE-----eC-ChHHhHhHHHHHHHHHHHcCCCcCCcc----------chhhhhhhhhhhhhhhhhhhcccccee
Q psy3514 56 MCAATVLF-----EG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGD 119 (159)
Q Consensus 56 ~cl~~~gf-----EG-~~~~V~~~~~~~~~I~~~~GG~~~G~~----------~g~~W~~~rF~~pYlRd~l~d~G~~~D 119 (159)
.|++++.| +| ++++|+.+.+.+.++++.+||....+. ....|...++..|.+.. .
T Consensus 311 ~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~---- 381 (524)
T 2exr_A 311 SVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P---- 381 (524)
T ss_dssp SEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----
T ss_pred cEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----
Confidence 47888888 89 788999999999999999999865532 22347776665554442 1
Q ss_pred eeecccccCChHHHHHHHHH
Q psy3514 120 SFETSVPWDKTVLLCINVKK 139 (159)
Q Consensus 120 T~ETAv~Ws~~~~l~~~V~~ 139 (159)
++++++|||+++++++.|++
T Consensus 382 ~~Dv~VP~s~l~~~~~~v~~ 401 (524)
T 2exr_A 382 WLNLFVSKRDIGDFNRTVFK 401 (524)
T ss_dssp CEEEEEEHHHHHHHHHHCCC
T ss_pred eeEEEECHHHHHHHHHHHHH
Confidence 35999999999999988865
No 8
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=58.00 E-value=5.7 Score=32.61 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=34.2
Q ss_pred CceEEEEEEeC-ChHHhHhHHHHHHHHHHHcCCCcCCccc
Q psy3514 55 EMCAATVLFEG-DPEDVKNNEDKIYSIAKRYGGIPAGESN 93 (159)
Q Consensus 55 ~~cl~~~gfEG-~~~~V~~~~~~~~~I~~~~GG~~~G~~~ 93 (159)
+.|.+++-++| +.+++....+.+.+++++++|+.++.++
T Consensus 270 ~~a~~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 270 KHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp SCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred cccEEEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 34788999999 7789999999999999999999888764
No 9
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=48.30 E-value=7 Score=34.07 Aligned_cols=84 Identities=7% Similarity=-0.090 Sum_probs=44.4
Q ss_pred eEEEEEEe----CC-h--HHhHhHHHHHHHHHHHcCCCcCC-ccchhhhhhhhhhhhh--hhh-hhhccccceeeeeccc
Q psy3514 57 CAATVLFE----GD-P--EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLTYIIAY--IRD-FACDYYFIGDSFETSV 125 (159)
Q Consensus 57 cl~~~gfE----G~-~--~~V~~~~~~~~~I~~~~GG~~~G-~~~g~~W~~~rF~~pY--lRd-~l~d~G~~~DT~ETAv 125 (159)
+++++.+. |+ + ++++...+.+.++++.+|+.... ..+...|.+ ++..+. +|. .++..+- -..++++
T Consensus 326 ~~l~ie~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~~~~~~w~~r~~~~~~~~~--~~~d~~v 402 (534)
T 1w1o_A 326 TVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLD-RVHGEEVALNKLGLWRVPH--PWLNMFV 402 (534)
T ss_dssp EEEEEEEEEEC-------CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHT-HHHHHHHHHHHTTCSSSCC--CCEEEEE
T ss_pred eEEEEEEEEecCCCccchhhhHHHHHHHHHhhcccCCcceeccchHHHHhh-hhhhhHHHHhhccccccCC--ccccEEe
Confidence 55555544 74 4 67888888888888888774322 111222221 111111 122 1121111 0228889
Q ss_pred ccCChHHHHHHHHHHHHH
Q psy3514 126 PWDKTVLLCINVKKRLTR 143 (159)
Q Consensus 126 ~Ws~~~~l~~~V~~al~~ 143 (159)
|||+++++.+.+.+++.+
T Consensus 403 P~s~l~~~~~~~~~~l~~ 420 (534)
T 1w1o_A 403 PRSRIADFDRGVFKGILQ 420 (534)
T ss_dssp EGGGHHHHHHHHTTTTTT
T ss_pred cHHHHHhHHHHHHHHHhh
Confidence 999999999888665544
No 10
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=32.96 E-value=47 Score=25.66 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=36.3
Q ss_pred CceEEEEEEeCC--hHHhHhHHHHHHHHHHHcCCCcCCccchhhhhhhhhhhhh
Q psy3514 55 EMCAATVLFEGD--PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 106 (159)
Q Consensus 55 ~~cl~~~gfEG~--~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~rF~~pY 106 (159)
..++++..|.|. .+.+..+.++..+.++++|-...|. -.+-.+|+.|+
T Consensus 137 ~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 186 (212)
T 3r8j_A 137 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 186 (212)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCBCSS----CEEEEESSSSS
T ss_pred CEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 468999999995 4668888999999999998665443 34556677665
No 11
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=32.90 E-value=10 Score=27.58 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=34.7
Q ss_pred hhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy3514 97 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 97 W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~~~ 157 (159)
+...+|--|-+|+.|.+.|+-+|.+.|.. .-.. -+.|..+|-++...|+
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~a----AcrT--------yNiL~~EgR~VaAaLi 124 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTGP----AIRT--------YNIMIGERRRVAAALI 124 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHH----HHHH--------HHHHHHHTSCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHH----HHHH--------HHHHHhCCCcEEEEEc
Confidence 45567877999999999999999999862 1222 3445566666666554
No 12
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=31.76 E-value=1.1e+02 Score=25.49 Aligned_cols=76 Identities=11% Similarity=0.057 Sum_probs=49.1
Q ss_pred EEeC-ChHHhHhHHHHHHHHHHHcCCCcC-------------Cc--------cchhhhhhhhhhhhhhhhhhhcccccee
Q psy3514 62 LFEG-DPEDVKNNEDKIYSIAKRYGGIPA-------------GE--------SNGRRGYMLTYIIAYIRDFACDYYFIGD 119 (159)
Q Consensus 62 gfEG-~~~~V~~~~~~~~~I~~~~GG~~~-------------G~--------~~g~~W~~~rF~~pYlRd~l~d~G~~~D 119 (159)
-.+| +...|....+.+.+.+++.+|-.+ +. .--+.|.+.+=-+.-+|+.|.+.|++.+
T Consensus 228 ~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~ 307 (365)
T 2ozl_A 228 RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV 307 (365)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH
Confidence 3578 467888888888888887777322 11 1125676544334577889999999876
Q ss_pred eeecccccCChHHHHHHHHHHHHHHH
Q psy3514 120 SFETSVPWDKTVLLCINVKKRLTREC 145 (159)
Q Consensus 120 T~ETAv~Ws~~~~l~~~V~~al~~~~ 145 (159)
+.+.++.+.+++.|.++.
T Consensus 308 --------~~~~~i~~~~~~~v~~a~ 325 (365)
T 2ozl_A 308 --------EELKEIDVEVRKEIEDAA 325 (365)
T ss_dssp --------HHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 344566666666655554
No 13
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=29.31 E-value=58 Score=25.48 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=34.3
Q ss_pred CceEEEEEEeCC--hHHhHhHHHHHHHHHHHcCCCcCCccchhhhhhhhhhhhh
Q psy3514 55 EMCAATVLFEGD--PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 106 (159)
Q Consensus 55 ~~cl~~~gfEG~--~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~rF~~pY 106 (159)
..++++..|.|. ++.+..+.++..+.+++.|-...|. -.+-.+|+.|+
T Consensus 156 ~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 205 (227)
T 4b0y_A 156 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 205 (227)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCCBCSS----CEEEEECC---
T ss_pred CEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 468999999995 4668888999999999998665443 34555677775
No 14
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=28.88 E-value=33 Score=22.97 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=31.1
Q ss_pred EEEEEeCChHHhHhHHHHHHHHHHHcCCC------------cCCccchhhhhhh-hhhhhhhh
Q psy3514 59 ATVLFEGDPEDVKNNEDKIYSIAKRYGGI------------PAGESNGRRGYML-TYIIAYIR 108 (159)
Q Consensus 59 ~~~gfEG~~~~V~~~~~~~~~I~~~~GG~------------~~G~~~g~~W~~~-rF~~pYlR 108 (159)
.++.|+|.-.. .++.+.+++.++||. ..|+.+|.|..+. .+.+|-+.
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLT 70 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEE
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEe
Confidence 35568886543 578888999999993 4477777665544 44445443
No 15
>4ha4_A Beta-galactosidase; TIM barrel, beta-glycosidase, hydrolase; HET: GOL PG6; 1.37A {Acidilobus saccharovorans} PDB: 4ha3_A* 1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 4eam_A 4ean_A
Probab=26.26 E-value=15 Score=31.97 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=34.6
Q ss_pred hhhhhhccccceeeeecccccCChHHH-----------------------------H-------HHHHHHHHHHHhccCC
Q psy3514 107 IRDFACDYYFIGDSFETSVPWDKTVLL-----------------------------C-------INVKKRLTRECTGRWL 150 (159)
Q Consensus 107 lRd~l~d~G~~~DT~ETAv~Ws~~~~l-----------------------------~-------~~V~~al~~~~~~~g~ 150 (159)
=+|.-+-..+-++++=+|+.||||-+- - =+-...|.++|.++|+
T Consensus 64 ~eDi~l~~~mG~~~yRfSIsWsRI~P~G~~~~~~~~e~~gd~~~~~~~~~g~~~~~~~~~N~~Gl~fY~~lid~Ll~~GI 143 (489)
T 4ha4_A 64 RKFHDAAQAMGLTAARIGVEWSRIFPRPTFDVKVDAEVKGDDVLSVYVSEGALEQLDKMANRDAINHYREMFSDLRSRGI 143 (489)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHCSSCCTTSCCEEEEETTEEEEEECCHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEeeccHHhcCcCCCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHcCC
Confidence 344433334566999999999998541 0 0123566889999999
Q ss_pred CcEEEEe
Q psy3514 151 PVLVKLL 157 (159)
Q Consensus 151 ~~~v~~~ 157 (159)
.++|.|.
T Consensus 144 eP~VTL~ 150 (489)
T 4ha4_A 144 TFILNLY 150 (489)
T ss_dssp EEEEESC
T ss_pred eeeEeec
Confidence 9998763
No 16
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=26.03 E-value=13 Score=26.79 Aligned_cols=49 Identities=4% Similarity=-0.096 Sum_probs=34.5
Q ss_pred hhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy3514 97 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 97 W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~~~ 157 (159)
+...+|--|-+|+.|.+.|+-+|.+.|.. .-+ .-+.|..+|-++...|+
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~a----Acr--------TyNiL~~EgR~VaAaLi 121 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNAA----AAR--------TYNVLASEGRRVALAMI 121 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHHH----HHH--------HHHHHHHHTCCEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHH----HHH--------HHHHHHhCCCcEEEEEc
Confidence 55667888999999999999999999842 122 23445566666665554
No 17
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=24.31 E-value=53 Score=24.33 Aligned_cols=49 Identities=14% Similarity=-0.048 Sum_probs=36.2
Q ss_pred hhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy3514 97 GYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 97 W~~~rF~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~~~ 157 (159)
+...+|--|-++..|.++|+-+|.+.|..- . +.-+.|..+|-++.+.|+
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~aA----~--------rTyNiL~~EgRrVaaaLi 145 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQAA----A--------RTYNILMAEGRRVVVALL 145 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHHH----H--------HHHHHHHHTTCCEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHHH----H--------HHHHHHHhCCCcEEEEEe
Confidence 455678889999999999999999998532 1 223456677777777665
No 18
>1uwi_A Beta-galactosidase; hydrolase, beta-glycosidase, glycosidase; 2.55A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1gow_A
Probab=23.74 E-value=30 Score=30.01 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=34.3
Q ss_pred hhhhhhccccceeeeecccccCChHHH-----------------------------------HHHHHHHHHHHHhccCCC
Q psy3514 107 IRDFACDYYFIGDSFETSVPWDKTVLL-----------------------------------CINVKKRLTRECTGRWLP 151 (159)
Q Consensus 107 lRd~l~d~G~~~DT~ETAv~Ws~~~~l-----------------------------------~~~V~~al~~~~~~~g~~ 151 (159)
=+|.-+-..+-++++=+|+.||||-+= ==+-...|.++|.++|+.
T Consensus 64 ~eDi~l~~elG~~~yRfSIsWsRI~P~G~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~~N~~Gl~fY~~lid~Ll~~GIe 143 (489)
T 1uwi_A 64 KTFHNNAQKMGLKIARLNSEWSRQFPNPLPRPQNFDESKQDVTEVEINENELKRLDEYANKDALNHYREIFKDLKSRGLY 143 (489)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHCCSCCCCCTTCCTTCSCCCCCCCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCCEEEEeCcHHHCCCCCCccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHcCCc
Confidence 344433334567999999999998531 001234568889999999
Q ss_pred cEEEEe
Q psy3514 152 VLVKLL 157 (159)
Q Consensus 152 ~~v~~~ 157 (159)
++|.|.
T Consensus 144 P~VTL~ 149 (489)
T 1uwi_A 144 FIQNMY 149 (489)
T ss_dssp EEEESC
T ss_pred ceEEee
Confidence 998763
No 19
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=22.67 E-value=75 Score=20.23 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=22.0
Q ss_pred EEEEeCChHHhHhHHHHHHHHHHHcCC
Q psy3514 60 TVLFEGDPEDVKNNEDKIYSIAKRYGG 86 (159)
Q Consensus 60 ~~gfEG~~~~V~~~~~~~~~I~~~~GG 86 (159)
++-..|+++.|+..++.+.++++..+|
T Consensus 53 ~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 53 IITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 344568899999999999999887765
No 20
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=22.02 E-value=22 Score=20.86 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.5
Q ss_pred ecccccCChHHHHHHH
Q psy3514 122 ETSVPWDKTVLLCINV 137 (159)
Q Consensus 122 ETAv~Ws~~~~l~~~V 137 (159)
+-.|||+.+..|.++.
T Consensus 3 ~l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 3 DLTVPWDDIEALLKNN 18 (41)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH
Confidence 3469999999988654
No 21
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=20.70 E-value=26 Score=24.77 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=34.3
Q ss_pred hhhhhh-hhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEEEe
Q psy3514 97 GYMLTY-IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLL 157 (159)
Q Consensus 97 W~~~rF-~~pYlRd~l~d~G~~~DT~ETAv~Ws~~~~l~~~V~~al~~~~~~~g~~~~v~~~ 157 (159)
+...+| -.|-+|+.|.++|+-+|.+.|..- -. .-+.|..+|-++...|+
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A----~r--------tyN~L~~EgR~VaAal~ 119 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTEQA----VK--------EYNALVAQGVRVGGVFH 119 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHHHH----HH--------HHHHHHHTTCCEEEEEE
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHHHH----HH--------HHHHHHhCCCcEEEEEe
Confidence 566788 668999999999999999988432 12 23445666766655543
Done!