RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3514
(159 letters)
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 124 bits (313), Expect = 4e-34
Identities = 33/150 (22%), Positives = 62/150 (41%)
Query: 5 RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
P+ IR+ D + + ++P G + T + K Y+ I F +C + + FE
Sbjct: 341 SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFE 400
Query: 65 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 124
G + V + ++ I + G + G+ Y + YIRDF D+ D ET+
Sbjct: 401 GPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETT 460
Query: 125 VPWDKTVLLCINVKKRLTRECTGRWLPVLV 154
V + L + K+ + + +P +
Sbjct: 461 VSYANLQTLWKDAKQTFVKHFKDQGIPAWI 490
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease,
hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe}
PDB: 4fcx_B*
Length = 417
Score = 29.9 bits (66), Expect = 0.31
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 100 LTYIIAYIRDFACDYYFI-GDSFETSVPWDKTVLLCINVKKRLT 142
I+ R+ D + GD F + P K + + +
Sbjct: 41 FNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNC 84
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 29.6 bits (67), Expect = 0.38
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Query: 9 PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE--GD 66
P+S+ + + + T+ +D M A + G
Sbjct: 274 PNSVVIASTLWEAGSAHLTR----AQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGT 329
Query: 67 PEDVKNNEDKIYSIAKRYGGI 87
E V N + + K+ G
Sbjct: 330 QEQVDVNWKIVTDVFKKLGKG 350
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION
transport, CF(0), stator, transport, acetylation,
hydrogen ION transport; 2.8A {Bos taurus} SCOP:
f.45.1.1 PDB: 1vzs_A 2wss_V*
Length = 77
Score = 28.0 bits (62), Expect = 0.41
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 37 TDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG 86
D ++KL+V KI +R + + + PE ++ + +++ + + YG
Sbjct: 5 LDPVQKLFVDKIREYRT-KRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 3.1
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 17/54 (31%)
Query: 27 RPDPGYLE-------LLTDGLKKL---YVT-KILGFRDDEM----CAATVLFEG 65
PD YL L+ G+ +L VT K+LGF E+ AT +G
Sbjct: 225 TPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 24.7 bits (54), Expect = 5.8
Identities = 11/46 (23%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 57 CAATVLFEGDPEDVK----NNEDKIYSIAKRYGGIPAGESNGRRGY 98
F P D D I I+K G G N + G
Sbjct: 12 ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGT 57
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: FMN;
2.30A {Streptococcus mutans} SCOP: d.90.1.1
Length = 208
Score = 25.7 bits (56), Expect = 6.6
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 47 KILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNG 94
K+ F T+L D V+N E+ A+ + + +++G
Sbjct: 85 KLESFAAG---VGTILLFEDQAVVRNLEENFPLYAENFQPW-SEQAHG 128
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 25.1 bits (55), Expect = 7.3
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 69 DVKNNEDKIYSIAKRYG--GIPA 89
+V N+ + ++ K G+P
Sbjct: 72 NVTANDAQDVALLKHLNVLGLPT 94
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 25.5 bits (56), Expect = 8.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 29 DPGYLE-LLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNED 75
P + L + KL+V R A + EG D+ + D
Sbjct: 36 KPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDAD 83
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP,
manganese, replication; HET: DA; 2.20A {Pyrococcus
furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Length = 333
Score = 25.5 bits (56), Expect = 9.0
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 98 YMLTYIIAYIRDFACDYYFI-GDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLV 154
+ D+ I GD F +S P T+ I + + +PV
Sbjct: 27 EAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHS----IPVFA 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.443
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,603,083
Number of extensions: 154075
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 15
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.9 bits)