RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3514
         (159 letters)



>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 54.3 bits (130), Expect = 5e-10
 Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 9/130 (6%)

Query: 5   RRCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 64
               P+S+ +   +               E          + ++                
Sbjct: 29  SNTIPNSVVIASTLWEAGSAHLTRAQYTTE--PGHTPDSVIKQMQKDTGMGAWNLYAALY 86

Query: 65  GDPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRRGYMLTYIIAYIRDFACDYYFI 117
           G  E V  N   +  + K+ G                +    L   +  +++F    +  
Sbjct: 87  GTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRG 146

Query: 118 GDSFETSVPW 127
           G       P 
Sbjct: 147 GGGSMWFAPV 156


>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber
           tree (Hevea brasiliensis) [TaxId: 3981]}
          Length = 273

 Score = 27.4 bits (60), Expect = 0.75
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 22  AGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIA 81
           A Q   PD      L  GL        + F ++  C  +     +  +  N      +  
Sbjct: 156 APQCPFPDRYLGTALNTGLFDYVW---VQFYNNPPCQYSSGNINNIINSWNRWTTSINAG 212

Query: 82  KRYGGIPAGESNGRRGYMLTYIIAY 106
           K + G+PA       GY+   ++  
Sbjct: 213 KIFLGLPAAPEAAGSGYVPPDVLIS 237


>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 66

 Score = 25.8 bits (57), Expect = 0.80
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 38 DGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG 86
          D ++KL+V KI  +R  +   +    +  PE  ++ + +++ + + YG 
Sbjct: 2  DPVQKLFVDKIREYRT-KRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK 49


>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 81

 Score = 24.4 bits (53), Expect = 3.2
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 46 TKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY 84
            I   +        V   G PE+V+   D I ++ + Y
Sbjct: 41 VDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEY 79


>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 76

 Score = 24.0 bits (52), Expect = 4.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 75 DKIYSIAKRYGGIPAGESNGRRGY 98
          D IY      GG   G  NGR G+
Sbjct: 33 DIIYVTRVEEGGWWEGTLNGRTGW 56


>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score = 24.3 bits (52), Expect = 7.8
 Identities = 8/40 (20%), Positives = 11/40 (27%)

Query: 47  KILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGG 86
           +I+G                      N     +IA  YGG
Sbjct: 96  RIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGG 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.143    0.443 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,563
Number of extensions: 31176
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 7
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.2 bits)