BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3517
         (113 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9BV10|ALG12_HUMAN Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
           OS=Homo sapiens GN=ALG12 PE=1 SV=1
          Length = 488

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/57 (75%), Positives = 49/57 (85%)

Query: 57  LAVATVHLAICPFTKVEESFNLQAMHDIFYHNMNISAYDHLEFPGVVPRTFLGPLFI 113
           +AVATVHL ICP+TKVEESFNLQA HD+ YH  ++  YDHLEFPGVVPRTFLGP+ I
Sbjct: 18  VAVATVHLVICPYTKVEESFNLQATHDLLYHWQDLEQYDHLEFPGVVPRTFLGPVVI 74


>sp|Q8VDB2|ALG12_MOUSE Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
           OS=Mus musculus GN=Alg12 PE=2 SV=1
          Length = 483

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/57 (73%), Positives = 48/57 (84%)

Query: 57  LAVATVHLAICPFTKVEESFNLQAMHDIFYHNMNISAYDHLEFPGVVPRTFLGPLFI 113
           + VAT+HL ICP+TKVEESFNLQA HD+ YH ++I  YDH EFPGVVPRTFLGPL I
Sbjct: 19  VTVATIHLVICPYTKVEESFNLQATHDLLYHQLDIDKYDHHEFPGVVPRTFLGPLVI 75


>sp|Q9VH78|ALG12_DROME Probable Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol
           alpha-1,6-mannosyltransferase OS=Drosophila melanogaster
           GN=CG8412 PE=2 SV=1
          Length = 678

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query: 52  MDSVALAVATVHLAICPFTKVEESFNLQAMHDIFYHNMNISAYDHLEFPGVVPRTFLGPL 111
           MD +    A  HL   PFTKVEESFNLQAMHDI Y   N + YDH ++PGVVPRTF+GPL
Sbjct: 1   MDILIFVTAAAHLVYTPFTKVEESFNLQAMHDILYLRNNFTQYDHHDYPGVVPRTFIGPL 60

Query: 112 FI 113
            +
Sbjct: 61  VV 62


>sp|A8MR93|ALG12_ARATH Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
           OS=Arabidopsis thaliana GN=ALG12 PE=1 SV=1
          Length = 497

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 53  DSVALAVATVHLAICPFTKVEESFNLQAMHDIFYHNMNISAYDHLEFPGVVPRTFLGPLF 112
           D +  +VA +++ + P+TKVEESFN+Q+MHDI YH  ++ +YDHLEFPGVVPRTF+G   
Sbjct: 17  DLILGSVAAIYVVMAPYTKVEESFNVQSMHDILYHRHHLDSYDHLEFPGVVPRTFIGAFI 76

Query: 113 I 113
           +
Sbjct: 77  V 77


>sp|P53730|ALG12_YEAST Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=ALG12 PE=1 SV=1
          Length = 551

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 52  MDSVALAVATVHLAICPFTKVEESFNLQAMHDIF-YHNMNISAYDHLEFPGVVPRTFLGP 110
           +D+V L V + HL   PFTKVEESFN+QA+HDI  Y   +IS YDHL+FPGVVPRTF+G 
Sbjct: 6   LDTVLLTVISFHLIQAPFTKVEESFNIQAIHDILTYSVFDISQYDHLKFPGVVPRTFVGA 65

Query: 111 LFI 113
           + I
Sbjct: 66  VII 68


>sp|Q23361|ALG12_CAEEL Probable Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol
           alpha-1,6-mannosyltransferase OS=Caenorhabditis elegans
           GN=ZC513.5 PE=1 SV=2
          Length = 492

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 66  ICPFTKVEESFNLQAMHDIFYH-NMNISAYDHLEFPGVVPRTFLGPL 111
           + P TKVEESFN+QA HD+ +H   N+S YDH +FPGVVPRTF+GP+
Sbjct: 18  LAPGTKVEESFNVQATHDLMFHLPTNLSNYDHSQFPGVVPRTFIGPI 64


>sp|Q9USD4|ALG12_SCHPO Probable Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol
           alpha-1,6-mannosyltransferase OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=alg12 PE=3 SV=2
          Length = 546

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 8/71 (11%)

Query: 51  TMDSVALAVATVHLAIC--------PFTKVEESFNLQAMHDIFYHNMNISAYDHLEFPGV 102
           + +S+   +A + L  C        PFTKVEESF +QA+HDI  +  ++S YDHLEFPG 
Sbjct: 3   SKESICWYLANILLVTCIGYYSYKTPFTKVEESFAMQAIHDIQTYRWDLSKYDHLEFPGA 62

Query: 103 VPRTFLGPLFI 113
           V R+F+  LFI
Sbjct: 63  VKRSFIPSLFI 73


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,696,393
Number of Sequences: 539616
Number of extensions: 1424442
Number of successful extensions: 2993
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2984
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)