Query psy3517
Match_columns 113
No_of_seqs 110 out of 180
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 18:41:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g92_A Poneratoxin, PAC-TX; ne 58.4 2.7 9.4E-05 23.6 0.5 18 60-84 6-23 (26)
2 2qjz_A Microtubule-associated 36.4 4.4 0.00015 28.6 -1.2 12 63-74 16-27 (123)
3 3lu9_C Proteinase-activated re 28.2 14 0.00048 20.5 0.2 7 102-108 6-12 (25)
4 1wyo_A Protein EB3, microtubul 19.9 10 0.00035 28.1 -1.8 11 64-74 34-44 (159)
5 3gxs_A Phenylacetate-coenzyme 15.7 45 0.0015 21.0 0.7 12 97-109 86-97 (109)
6 2qjx_A Protein BIM1; calponin 12.4 72 0.0025 22.6 1.1 22 64-86 22-47 (127)
7 3lax_A Phenylacetate-coenzyme 12.4 63 0.0022 20.0 0.7 13 96-109 85-97 (109)
8 2d5r_A CCR4-NOT transcription 11.2 64 0.0022 24.9 0.5 10 97-106 31-40 (252)
9 4gmj_B CCR4-NOT transcription 11.1 69 0.0024 25.1 0.7 15 92-106 32-50 (285)
10 1t0f_C Protein E, transposon T 10.4 76 0.0026 19.8 0.6 10 3-12 9-18 (54)
No 1
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=58.41 E-value=2.7 Score=23.58 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=11.4
Q ss_pred HHHHHHHcCCcchhhhhhhhhhhhh
Q psy3517 60 ATVHLAICPFTKVEESFNLQAMHDI 84 (113)
Q Consensus 60 ~~~hl~~aPyTKVEESFnlQAiHDi 84 (113)
++--+++.|= -+|||||-
T Consensus 6 ilgsllmtpp-------viqaihda 23 (26)
T 1g92_A 6 ILGSLLMTPP-------VIQAIHDA 23 (26)
T ss_dssp HHHTCSSSCC-------TTTHHHHH
T ss_pred HHHHHhcCcH-------HHHHHHHh
Confidence 3344555553 38999995
No 2
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=36.40 E-value=4.4 Score=28.62 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=9.3
Q ss_pred HHHHcCCcchhh
Q psy3517 63 HLAICPFTKVEE 74 (113)
Q Consensus 63 hl~~aPyTKVEE 74 (113)
-++-+.||||||
T Consensus 16 ~~L~~~~~kiE~ 27 (123)
T 2qjz_A 16 ESLQLNLTKIEQ 27 (123)
T ss_dssp HHHTCCCCCGGG
T ss_pred HHHCCCCchHHH
Confidence 345789999987
No 3
>3lu9_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, calcium, CL PAIR of basic residues, disease mutation; HET: NAG; 1.80A {Homo sapiens}
Probab=28.24 E-value=14 Score=20.49 Aligned_cols=7 Identities=57% Similarity=1.127 Sum_probs=5.7
Q ss_pred Ccccccc
Q psy3517 102 VVPRTFL 108 (113)
Q Consensus 102 vVPRTFi 108 (113)
+.||||+
T Consensus 6 ~~pRsF~ 12 (25)
T 3lu9_C 6 LDPRSFL 12 (26)
T ss_dssp CEESCCC
T ss_pred cCceeeE
Confidence 5699996
No 4
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.94 E-value=10 Score=28.05 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=8.9
Q ss_pred HHHcCCcchhh
Q psy3517 64 LAICPFTKVEE 74 (113)
Q Consensus 64 l~~aPyTKVEE 74 (113)
++-..||||||
T Consensus 34 ~L~~~~~kiE~ 44 (159)
T 1wyo_A 34 SLHLNYTKIEQ 44 (159)
T ss_dssp HSCCCCSSGGG
T ss_pred HHCCCCchhhh
Confidence 45689999987
No 5
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=15.69 E-value=45 Score=21.04 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=7.5
Q ss_pred ccCCCCccccccc
Q psy3517 97 LEFPGVVPRTFLG 109 (113)
Q Consensus 97 ~~FPGvVPRTFiG 109 (113)
+-=||.+||| -|
T Consensus 86 ~v~~~~lPrt-sG 97 (109)
T 3gxs_A 86 LVPKGALPKS-EG 97 (109)
T ss_dssp EECTTCSCCC---
T ss_pred EECCCCccCC-CC
Confidence 3447899999 66
No 6
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=12.45 E-value=72 Score=22.62 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=14.7
Q ss_pred HHHcCCcchhhhhhh----hhhhhhhh
Q psy3517 64 LAICPFTKVEESFNL----QAMHDIFY 86 (113)
Q Consensus 64 l~~aPyTKVEESFnl----QAiHDiL~ 86 (113)
++-+.||||||-=+= | +-|.++
T Consensus 22 ~L~~n~~kiEel~tGaayCQ-l~d~l~ 47 (127)
T 2qjx_A 22 LLNLNYKKIEECGTGAAYCQ-IMDSIY 47 (127)
T ss_dssp HHTCCCCSGGGGGGSHHHHH-HHHHHH
T ss_pred HHcCCccHHHHccchHHHHH-HHhhhc
Confidence 467899999996432 3 345555
No 7
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=12.42 E-value=63 Score=20.03 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=8.5
Q ss_pred cccCCCCccccccc
Q psy3517 96 HLEFPGVVPRTFLG 109 (113)
Q Consensus 96 H~~FPGvVPRTFiG 109 (113)
++--||.+||| -|
T Consensus 85 ~~v~~~~lPrt-sG 97 (109)
T 3lax_A 85 KLVPKGALPKS-EG 97 (109)
T ss_dssp EEECTTCSCCC---
T ss_pred EEEcCCeecCC-CC
Confidence 45568999998 46
No 8
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=11.22 E-value=64 Score=24.88 Aligned_cols=10 Identities=70% Similarity=1.178 Sum_probs=8.7
Q ss_pred ccCCCCcccc
Q psy3517 97 LEFPGVVPRT 106 (113)
Q Consensus 97 ~~FPGvVPRT 106 (113)
.||||+|.|.
T Consensus 31 tEFpGvv~rp 40 (252)
T 2d5r_A 31 TEFPGVVARP 40 (252)
T ss_dssp EECCCCCCCC
T ss_pred eeecceeccc
Confidence 6899999885
No 9
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=11.11 E-value=69 Score=25.06 Aligned_cols=15 Identities=53% Similarity=0.946 Sum_probs=11.2
Q ss_pred CCCCc----ccCCCCcccc
Q psy3517 92 SAYDH----LEFPGVVPRT 106 (113)
Q Consensus 92 ~~YDH----~~FPGvVPRT 106 (113)
++|++ .||||+|.|.
T Consensus 32 ~~~~fVAiDtEFpGvv~rp 50 (285)
T 4gmj_B 32 RKYNYVAMDTEFPGVVARP 50 (285)
T ss_dssp HHCCEEEEEEECCCCCCCC
T ss_pred hcCCEEEEEEEecCccCCC
Confidence 45554 4899999985
No 10
>1t0f_C Protein E, transposon TN7 transposition protein TNSC; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli}
Probab=10.43 E-value=76 Score=19.82 Aligned_cols=10 Identities=60% Similarity=1.129 Sum_probs=7.3
Q ss_pred cccccccccc
Q psy3517 3 KSQWDTLQDT 12 (113)
Q Consensus 3 ~~~~~~~~~~ 12 (113)
+.||+||.+.
T Consensus 9 ~~~W~tL~~~ 18 (54)
T 1t0f_C 9 PSDWDSLPDT 18 (54)
T ss_dssp GGGGGGSCTT
T ss_pred ccccCcCCHh
Confidence 4689998654
Done!