Query psy3517
Match_columns 113
No_of_seqs 110 out of 180
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 18:41:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3517.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3517hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qjza1 a.40.1.1 (A:13-132) Mi 61.1 0.47 3.4E-05 32.1 -1.2 12 63-74 14-25 (120)
2 d1yfna1 b.136.1.1 (A:4-111) St 12.3 40 0.0029 22.0 1.4 33 76-109 9-44 (108)
3 d1ou8a_ b.136.1.1 (A:) Stringe 9.9 56 0.0041 21.2 1.5 33 76-109 7-42 (106)
4 d2fug32 c.81.1.1 (3:247-685) N 9.4 30 0.0022 24.5 -0.1 19 65-83 98-116 (439)
5 d2q07a2 c.18.1.4 (A:244-393) U 8.7 36 0.0026 23.5 0.1 31 74-107 31-61 (150)
6 d1dwma_ d.40.1.1 (A:) Trypsin 6.8 69 0.0051 19.2 0.8 9 2-10 6-14 (69)
7 d1in0a1 d.58.49.1 (A:2-89) Hyp 6.7 69 0.005 20.1 0.8 15 73-87 52-66 (88)
8 d1qnta1 a.4.2.1 (A:92-176) O6- 6.6 69 0.005 19.3 0.7 13 74-86 1-13 (85)
9 d2ivda2 d.16.1.5 (A:307-414) P 6.5 27 0.002 21.4 -1.3 18 93-110 39-62 (108)
10 d1efna_ b.34.2.1 (A:) Fyn prot 6.4 41 0.003 18.1 -0.5 11 100-110 46-56 (57)
No 1
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.11 E-value=0.47 Score=32.10 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=10.0
Q ss_pred HHHHcCCcchhh
Q psy3517 63 HLAICPFTKVEE 74 (113)
Q Consensus 63 hl~~aPyTKVEE 74 (113)
.++-++||||||
T Consensus 14 ~~L~~~~~kiEe 25 (120)
T d2qjza1 14 ESLQLNLTKIEQ 25 (120)
T ss_dssp HHHTCCCCCGGG
T ss_pred HHhCCChhhHHH
Confidence 456789999999
No 2
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=12.30 E-value=40 Score=22.04 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=20.7
Q ss_pred hhhhhhhhhhhcCCCCCCCCcc--cCCCC-ccccccc
Q psy3517 76 FNLQAMHDIFYHNMNISAYDHL--EFPGV-VPRTFLG 109 (113)
Q Consensus 76 FnlQAiHDiL~~~~~l~~YDH~--~FPGv-VPRTFiG 109 (113)
+=+.|+||-+.- .+..-|=.+ ..||| ||+.|+.
T Consensus 9 YliRA~y~W~~D-n~~TPyl~Vda~~~~v~VP~~~v~ 44 (108)
T d1yfna1 9 YLLRAFYEWLLD-NQLTPHLVVDVTLPGVQVPMEYAR 44 (108)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEEETTSTTCBSCGGGCB
T ss_pred HhHHHHHHHHHH-CCCCCEEEEEeCCCCCcCCHHHcc
Confidence 347889997743 233444322 45888 9999874
No 3
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=9.95 E-value=56 Score=21.19 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=20.5
Q ss_pred hhhhhhhhhhhcCCCCCCCCc--ccCCCC-ccccccc
Q psy3517 76 FNLQAMHDIFYHNMNISAYDH--LEFPGV-VPRTFLG 109 (113)
Q Consensus 76 FnlQAiHDiL~~~~~l~~YDH--~~FPGv-VPRTFiG 109 (113)
+=+.|+||-+.- .+..-|=. ...||| ||+.|+.
T Consensus 7 YLiRA~y~W~~D-n~~TP~l~Vda~~~~v~VP~~~v~ 42 (106)
T d1ou8a_ 7 YLLRAYYDWLVD-NSFTPYLVVDATYLGVNVPVEYVK 42 (106)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEEETTSTTCBCCGGGCB
T ss_pred HhHHHHHHHHHH-CCCCCeEEEEeCCCCCcCCHHHcc
Confidence 347889997743 23333411 356787 9999874
No 4
>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]}
Probab=9.41 E-value=30 Score=24.47 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=11.8
Q ss_pred HHcCCcchhhhhhhhhhhh
Q psy3517 65 AICPFTKVEESFNLQAMHD 83 (113)
Q Consensus 65 ~~aPyTKVEESFnlQAiHD 83 (113)
+.+|..-.||.|-.|..-.
T Consensus 98 ~~~~~~~~e~~~~~~~~~~ 116 (439)
T d2fug32 98 YLAHDATLEEGLLASELAK 116 (439)
T ss_dssp EECTTCCHHHHHHHHHHHH
T ss_pred eeeccccchhHHHHHHHHh
Confidence 3466666777776665544
No 5
>d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.69 E-value=36 Score=23.51 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=18.6
Q ss_pred hhhhhhhhhhhhhcCCCCCCCCcccCCCCccccc
Q psy3517 74 ESFNLQAMHDIFYHNMNISAYDHLEFPGVVPRTF 107 (113)
Q Consensus 74 ESFnlQAiHDiL~~~~~l~~YDH~~FPGvVPRTF 107 (113)
.|-.-|++++.+-. ..... =++=||+|||-+
T Consensus 31 ~S~SH~~f~~~i~~--~~hev-~vtsP~lVPReL 61 (150)
T d2q07a2 31 TSRTHRALRSKVKV--NVNEI-IISSPLVVPREF 61 (150)
T ss_dssp GSHHHHHHHHHSCC--CSEEE-EECSSCEEEGGG
T ss_pred cChhHHHHHHHHhh--cceEE-EecCCCcCcHHH
Confidence 46667777776622 22111 256799999965
No 6
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}
Probab=6.80 E-value=69 Score=19.21 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=6.9
Q ss_pred Ccccccccc
Q psy3517 2 GKSQWDTLQ 10 (113)
Q Consensus 2 ~~~~~~~~~ 10 (113)
||+.|-.|-
T Consensus 6 gK~sWPELV 14 (69)
T d1dwma_ 6 GKNAWPELV 14 (69)
T ss_dssp SCSBCGGGT
T ss_pred CCCcCHHHC
Confidence 788887764
No 7
>d1in0a1 d.58.49.1 (A:2-89) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=6.72 E-value=69 Score=20.10 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhhhc
Q psy3517 73 EESFNLQAMHDIFYH 87 (113)
Q Consensus 73 EESFnlQAiHDiL~~ 87 (113)
|.-|.+++++|||..
T Consensus 52 ~~e~kl~q~~diL~~ 66 (88)
T d1in0a1 52 ESDFQLEQLIEILIG 66 (88)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 567999999999944
No 8
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.58 E-value=69 Score=19.32 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.9
Q ss_pred hhhhhhhhhhhhh
Q psy3517 74 ESFNLQAMHDIFY 86 (113)
Q Consensus 74 ESFnlQAiHDiL~ 86 (113)
|||+-|++.+.|-
T Consensus 1 ~~F~~~~vw~~l~ 13 (85)
T d1qnta1 1 ESFTRQVLWKLLK 13 (85)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHh
Confidence 7999999888874
No 9
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Probab=6.53 E-value=27 Score=21.37 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=13.1
Q ss_pred CCCcccCCCCcc------cccccc
Q psy3517 93 AYDHLEFPGVVP------RTFLGP 110 (113)
Q Consensus 93 ~YDH~~FPGvVP------RTFiG~ 110 (113)
.||...||+..| |.|+|.
T Consensus 39 ~f~S~~fp~r~p~~~~llrv~~Gg 62 (108)
T d2ivda2 39 IHASTTFPFRAEGGRVLYSCMVGG 62 (108)
T ss_dssp EEHHHHCGGGBSTTCEEEEEEEEC
T ss_pred EEEccccccccCCCCEEEEEEeCC
Confidence 377777887777 778773
No 10
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.39 E-value=41 Score=18.07 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=7.1
Q ss_pred CCCcccccccc
Q psy3517 100 PGVVPRTFLGP 110 (113)
Q Consensus 100 PGvVPRTFiG~ 110 (113)
-|-||.+|+-+
T Consensus 46 ~G~vP~~yv~p 56 (57)
T d1efna_ 46 TGYIPSNYVAP 56 (57)
T ss_dssp EEEEEGGGEEE
T ss_pred EEEEeHHHeEE
Confidence 36677777654
Done!