RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3517
         (113 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.6 bits (73), Expect = 0.014
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 29/55 (52%)

Query: 11 DTEEIN-MDSSLLLKY-PSICICSDSSDVYYSDYFPGIPVDLTMDSVALAV-ATV 62
          + + +  + +SL L Y        DS+        P           ALA+ AT+
Sbjct: 18 EKQALKKLQASLKL-YAD------DSA--------P-----------ALAIKATM 46


>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
          GPCR, graves' disea autoimmunity, receptor-autoantibody
          complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
          3g04_C*
          Length = 239

 Score = 26.1 bits (58), Expect = 2.3
 Identities = 5/30 (16%), Positives = 7/30 (23%), Gaps = 4/30 (13%)

Query: 26 PSICICSDSSDVYYSD----YFPGIPVDLT 51
             C C    D   +       P +P    
Sbjct: 5  SPPCECHQEEDFRVTCKDIQRIPSLPPSTQ 34


>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO;
           HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
          Length = 714

 Score = 25.9 bits (57), Expect = 3.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 30  ICSDSSDVYYSDYFPGIPVDLTMDSVALAVATV 62
           I    +   +   F G P+ ++MD+  LA+A +
Sbjct: 385 IDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAI 417


>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone
           prosthetic group; HET: MDO; 1.50A {Rhodobacter
           sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A*
           2o7f_A*
          Length = 521

 Score = 24.9 bits (55), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 43  FPGIPVDLTMDSVALAVATV 62
           F G  V LT D++A AV  +
Sbjct: 348 FMGQHVALTSDALATAVTVL 367


>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana
           var} PDB: 3nz4_A*
          Length = 705

 Score = 25.2 bits (55), Expect = 7.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 43  FPGIPVDLTMDSVALAVATV 62
           F G  V   MD V +AVA +
Sbjct: 389 FQGSAVGFYMDYVRIAVAGL 408


>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
           heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
           PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
          Length = 640

 Score = 25.1 bits (54), Expect = 7.8
 Identities = 4/37 (10%), Positives = 11/37 (29%)

Query: 8   TLQDTEEINMDSSLLLKYPSICICSDSSDVYYSDYFP 44
           T+   ++  +     +  P + I      +  S    
Sbjct: 460 TVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEG 496


>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
           2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
           2ohy_A* 3kdz_A* 3kdy_A*
          Length = 526

 Score = 24.9 bits (55), Expect = 8.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 43  FPGIPVDLTMDSVALAVATV 62
           F G P+   MD V +A+  +
Sbjct: 343 FHGQPIAFAMDFVTIALTQL 362


>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
          Length = 547

 Score = 24.6 bits (54), Expect = 8.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 43  FPGIPVDLTMDSVALAVATV 62
           F G  V + MD + +A+ T+
Sbjct: 367 FHGQYVSMAMDHLNIALVTM 386


>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A
           {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
          Length = 716

 Score = 24.7 bits (54), Expect = 9.9
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 43  FPGIPVDLTMDSVALAVATV 62
           F    V  TM+   L +A +
Sbjct: 413 FQAAAVANTMEKTRLGLAQI 432


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,711,945
Number of extensions: 85463
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 16
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)