RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3517
         (113 letters)



>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
           thermophilus [TaxId: 274]}
          Length = 234

 Score = 24.7 bits (53), Expect = 2.8
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 10  QDTEEINMDSSLLLKYPSICICSDSSDVYYSDYFPGIPV-DLTMDSVAL 57
              E I +  +  L  P I +    SD    DY   IP  D  + S+ L
Sbjct: 161 PTKEAIAVREARKLFIPVIALADTDSDPDLVDYI--IPGNDDAIRSIQL 207


>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 343

 Score = 24.5 bits (53), Expect = 3.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 25  YPSICICSDSSDVYYSDYFPG 45
              +   S    +Y +D+FPG
Sbjct: 144 KEQMVDSSKPELLYRTDFFPG 164


>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
           (Rhodosporidium toruloides) [TaxId: 5286]}
          Length = 678

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 27  SICICSDSSDVYYSDYFPGIPVDLTMDSVALAVATV 62
           +  I  ++   ++   F    V  TM+   L +A +
Sbjct: 359 NPLIDVENKTSHHGGNFQAAAVANTMEKTRLGLAQI 394


>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related
           protein-1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 142

 Score = 23.7 bits (51), Expect = 5.0
 Identities = 2/29 (6%), Positives = 7/29 (24%)

Query: 81  MHDIFYHNMNISAYDHLEFPGVVPRTFLG 109
                   +  + ++ +E  G        
Sbjct: 73  TAKSHKSTVEYNIFEGMECHGSPLVVISQ 101


>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple
          bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
          Length = 53

 Score = 22.5 bits (48), Expect = 5.5
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 45 GIPVDLTMDSVALAVATVHLAI 66
          GIP    + SV +    VHLAI
Sbjct: 15 GIP--ALLGSVTVIAILVHLAI 34


>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits
          {Rhodoblastus acidophilus [TaxId: 1074]}
          Length = 46

 Score = 22.0 bits (47), Expect = 7.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 44 PGIPVDLTMDSVALAVATVHLAI 66
          P   + L + +VA+    VH A+
Sbjct: 12 PAFGLPLMLGAVAITALLVHAAV 34


>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 200

 Score = 23.3 bits (50), Expect = 7.9
 Identities = 8/95 (8%), Positives = 24/95 (25%), Gaps = 9/95 (9%)

Query: 1   MGKSQWDTLQDTEEINMDSSLLLKYPSICICSDSSDVY--YSDYFPGIPVDLTMDSVALA 58
             K  ++ ++   E  +++    +     +     + +      +             L 
Sbjct: 46  RKKKGYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAY-------KSSEGELQ 98

Query: 59  VATVHLAICPFTKVEESFNLQAMHDIFYHNMNISA 93
            A    A  P   +    +L    +      N + 
Sbjct: 99  NALKEAASVPMDVIRVMKDLAHELEKLAEFGNKNL 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,233
Number of extensions: 16123
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 10
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)