BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3521
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
          Phosphatase Inhibitors
          Length = 172

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 49 SETPFDEKSILNLPPSHYEFPNGYHQLIHIP 79
          SE  F  K +LNL    Y  PN    +IHIP
Sbjct: 49 SEVKF--KYVLNLTXDKYTLPNSNINIIHIP 77


>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
          Phosphatase Vh1
 pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
          Dual-Specificity Phosphatase Vh1
          Length = 176

 Score = 26.2 bits (56), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 49 SETPFDEKSILNLPPSHYEFPNGYHQLIHIP 79
          SE  F  K +LNL    Y  PN    +IHIP
Sbjct: 53 SEVKF--KYVLNLTMDKYTLPNSNINIIHIP 81


>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
          VACCINIA VIRUS Wr
 pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
          VACCINIA VIRUS Wr
 pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
          VACCINIA VIRUS Wr
 pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
          VACCINIA VIRUS Wr
          Length = 195

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 49 SETPFDEKSILNLPPSHYEFPNGYHQLIHIP 79
          SE  F  K +LNL    Y  PN    +IHIP
Sbjct: 70 SEVKF--KYVLNLTXDKYTLPNSNINIIHIP 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,021,973
Number of Sequences: 62578
Number of extensions: 103397
Number of successful extensions: 193
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)