BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3521
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O96019|ACL6A_HUMAN Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1
Length = 429
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
M+ +KEA+++ P W RK+ LP+VT+SWHNY V+QDFQ SVLQVS++ +DE+
Sbjct: 222 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 281
Query: 61 LPPSHYEFPNGYH 73
+P HYEFPNGY+
Sbjct: 282 MPTVHYEFPNGYN 294
>sp|Q9Z2N8|ACL6A_MOUSE Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2
Length = 429
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
M+ +KEA+++ P W RK+ LP+VT+SWHNY V+QDFQ SVLQVS++ +DE+
Sbjct: 222 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 281
Query: 61 LPPSHYEFPNGYH 73
+P HYEFPNGY+
Sbjct: 282 MPTVHYEFPNGYN 294
>sp|Q4R333|ACL6A_MACFA Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1
Length = 429
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
M+ +KEA+++ P W RK+ LP+VT+SWHNY V+QDFQ SVLQVS++ +DE+
Sbjct: 222 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 281
Query: 61 LPPSHYEFPNGYH 73
+P HYEFPNGY+
Sbjct: 282 MPTVHYEFPNGYN 294
>sp|P86173|ACL6B_RAT Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2
Length = 426
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 55/73 (75%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
M+ AKE +++ PP W +K+ LP+V++SWHNY +V+QDFQ SVLQVS++P+DE+
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278
Query: 61 LPPSHYEFPNGYH 73
+P HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291
>sp|Q99MR0|ACL6B_MOUSE Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1
Length = 426
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 55/73 (75%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
M+ AKE +++ PP W +K+ LP+V++SWHNY +V+QDFQ SVLQVS++P+DE+
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278
Query: 61 LPPSHYEFPNGYH 73
+P HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291
>sp|A4FUX8|ACL6B_BOVIN Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1
Length = 426
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 55/73 (75%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
M+ AKE +++ PP W +K+ LP+V++SWHNY +V+QDFQ SVLQVS++P+DE+
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278
Query: 61 LPPSHYEFPNGYH 73
+P HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291
>sp|O94805|ACL6B_HUMAN Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1
Length = 426
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 55/73 (75%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
M+ AKE +++ PP W +K+ LP+V++SWHNY +V+QDFQ SVLQVS++P+DE+
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278
Query: 61 LPPSHYEFPNGYH 73
+P HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291
>sp|Q84M92|ARP4_ARATH Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1
Length = 441
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 35/51 (68%)
Query: 21 NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG 71
++P+ T+S+ + + +V D + S+ +V +TP+D+KS N+P + YE P+G
Sbjct: 246 DIPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTTSYELPDG 296
>sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4
PE=2 SV=1
Length = 443
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 21 NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG 71
+LP T+S+ Y ++ + D ++SV +V +T FDE + N+P + YE P+G
Sbjct: 249 DLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTTSYELPDG 299
>sp|A2YR10|ARP4_ORYSI Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2
SV=2
Length = 443
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 21 NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG 71
+LP T+S+ Y ++ + D ++SV +V +T FDE + N+P + YE P+G
Sbjct: 249 DLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTTSYELPDG 299
>sp|Q4P2E8|ARP4_USTMA Actin-related protein 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=ARP4 PE=3 SV=1
Length = 534
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 18 RKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYH 73
R++ + + S+ +Y + +VV DF++SV QV E P+D++ YEFP+GY+
Sbjct: 308 RQERVQGASSSFRSYHINRVVNDFKESVAQVLEVPWDDQQAQFRSGRMYEFPDGYN 363
>sp|Q09849|ARP42_SCHPO SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arp42 PE=1 SV=2
Length = 424
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 22 LPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG 71
+ ++T S+ + ++V++++++SVL V +TPFDE + P +EFP+G
Sbjct: 231 IQDLTSSYEIFQKRRVIEEWKESVLDVLDTPFDEAKASSRNPKPFEFPDG 280
>sp|Q9P7X7|ARP4_SCHPO Actin-related protein 4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=alp5 PE=3 SV=1
Length = 433
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 8 IKDKEPPKWTRKKNLP----EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPP 63
+K K P + + N + T S+H + V++V ++++ +S+ PF ++ +
Sbjct: 204 VKSKNPVEIGQPANCELRPRDTTDSYHQFQVQRVYDEWKEECALISDVPFSSET--TIAE 261
Query: 64 SHYEFPNGYHQLIHIPTY 81
S +EFP+G + Y
Sbjct: 262 SEFEFPDGSRMMFGAERY 279
>sp|Q4IPI4|ARP4_GIBZE Actin-related protein 4 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=ARP4 PE=3 SV=1
Length = 471
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 18 RKKNLP-EVTQSWHNYSVKKVVQDFQQSVLQV------SETPFDEKSILNLPPSHYEFPN 70
R +N P +T S+ Y ++V+ +F++SV++V P +E+ + P +E P+
Sbjct: 271 RLRNFPYSITDSFRAYEEERVLTEFKESVVEVWRGPGRYSVPGNEEFVKTQPGRVFEMPD 330
Query: 71 GYHQL 75
GY+Q+
Sbjct: 331 GYNQM 335
>sp|Q7SHR0|ARP4_NEUCR Actin-related protein 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=arp-4
PE=3 SV=2
Length = 469
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSE------TPFD 54
MV +K+ ++ P + +K ++ S+ Y ++V+ +F++SV++V TP +
Sbjct: 252 MVESKKPVEAGAPAEANLRKFNFDIHPSFRAYEEERVLTEFKESVVEVWRGPQRFTTPGN 311
Query: 55 EKSILNLPPSHYEFPNGYHQL 75
E ++ P +E P+G +Q+
Sbjct: 312 EDAVRTQPGRVFEMPDGSNQM 332
>sp|Q5AW89|ARP4_EMENI Actin-related protein 4 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=arp4 PE=3
SV=1
Length = 472
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVT--QSWHNYSVKKVVQDFQQSVLQVSETPF----- 53
++ +K A++ +PP+ K PE S+ + ++ + +F++ V+QV P
Sbjct: 247 LISSKTAVEAGQPPQAKYKTFPPEKAPDASYRSLLEERTLTEFKECVVQVWPGPTKLSAP 306
Query: 54 ------DEKSILNLPPSHYEFPNGYHQLIHIPTY 81
+E+ + P +EFP+GY+Q+ + Y
Sbjct: 307 GPNGVPNEEMARSTPGRPFEFPDGYNQVFGVDRY 340
>sp|Q5RFV8|CB044_DANRE WD repeat-containing protein C2orf44 homolog OS=Danio rerio
GN=si:dkeyp-115a10.2 PE=2 SV=2
Length = 714
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 10 DKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFP 69
D PPK +++KNL ++TQ+ + + QQ + ++ E + K I PS YE
Sbjct: 553 DATPPKNSKEKNLEQLTQNMERIFTR--FAEVQQCLSEIREFTQNGKKIACSYPSAYE-- 608
Query: 70 NGYHQLIHI 78
Q +HI
Sbjct: 609 ---PQYVHI 614
>sp|Q4WHA3|ARP4_ASPFU Actin-related protein 4 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=arp4 PE=3
SV=1
Length = 466
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 1 MVGAKEAIKDKEPPKWTRKKNLPEVT--QSWHNYSVKKVVQDFQQSVLQVSETP------ 52
+V +K A+ +P + K P+ S+ ++ + +F++ V+QV P
Sbjct: 241 LVASKTAVDAGQPAQAKYKTFPPDKAPDASYRTLMEERTLSEFKECVVQVWPGPNKLSAT 300
Query: 53 -----FDEKSILNLPPSHYEFPNGYHQLIHIPTY 81
+E+ + P +EFP+GY+Q+ I Y
Sbjct: 301 GPNGVSNEEVAKSSPGRPFEFPDGYNQVFGIDRY 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,562,601
Number of Sequences: 539616
Number of extensions: 1242109
Number of successful extensions: 2454
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2440
Number of HSP's gapped (non-prelim): 24
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)