Query psy3521
Match_columns 88
No_of_seqs 108 out of 1013
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:46:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0679|consensus 99.6 6.1E-17 1.3E-21 117.7 1.7 87 1-87 211-302 (426)
2 PTZ00466 actin-like protein; P 99.2 1.4E-11 3E-16 90.1 5.6 64 24-87 201-271 (380)
3 PTZ00452 actin; Provisional 99.2 1.3E-11 2.9E-16 90.0 5.3 64 24-87 195-266 (375)
4 KOG0677|consensus 99.2 1E-11 2.3E-16 87.8 3.7 64 23-86 195-266 (389)
5 KOG0676|consensus 99.2 1.1E-11 2.3E-16 90.7 3.7 65 23-87 191-263 (372)
6 PTZ00281 actin; Provisional 99.1 8.5E-11 1.8E-15 85.6 5.5 64 24-87 196-267 (376)
7 PTZ00004 actin-2; Provisional 99.1 2.1E-10 4.5E-15 83.6 5.3 61 26-87 198-268 (378)
8 PF00022 Actin: Actin; InterP 98.8 3.8E-09 8.2E-14 76.5 3.5 62 26-87 208-276 (393)
9 cd00012 ACTIN Actin; An ubiqui 98.5 9.9E-08 2.1E-12 69.0 4.5 59 29-87 195-262 (371)
10 smart00268 ACTIN Actin. ACTIN 98.5 1.6E-07 3.5E-12 67.8 5.4 59 28-87 194-264 (373)
11 PTZ00280 Actin-related protein 98.3 9.9E-07 2.2E-11 65.0 4.8 61 25-86 208-283 (414)
12 KOG0680|consensus 98.1 7.5E-07 1.6E-11 64.6 1.2 63 24-87 194-290 (400)
13 COG5277 Actin and related prot 96.4 0.0041 8.8E-08 46.9 3.6 54 33-86 220-305 (444)
14 KOG0678|consensus 92.2 0.07 1.5E-06 39.4 1.2 39 13-51 198-236 (415)
15 TIGR00904 mreB cell shape dete 75.0 0.47 1E-05 33.9 -1.5 51 35-85 203-255 (333)
16 KOG0681|consensus 67.6 1.9 4.1E-05 33.9 0.2 11 77-87 521-531 (645)
17 PF14122 YokU: YokU-like prote 61.9 6.6 0.00014 23.5 1.7 16 61-76 14-30 (87)
18 KOG0797|consensus 48.8 13 0.00027 29.4 1.8 54 30-87 333-395 (618)
19 PRK13930 rod shape-determining 43.6 6.3 0.00014 27.9 -0.5 17 35-51 205-221 (335)
20 PF09776 Mitoc_L55: Mitochondr 43.3 23 0.0005 22.3 2.1 18 63-80 46-63 (116)
21 PF07481 DUF1521: Domain of Un 32.4 39 0.00084 22.6 1.9 14 63-76 63-76 (171)
22 TIGR03831 YgiT_finger YgiT-typ 30.1 55 0.0012 16.0 2.0 22 63-85 15-45 (46)
23 PRK13927 rod shape-determining 28.5 15 0.00033 26.0 -0.5 17 35-51 201-217 (334)
24 PF00379 Chitin_bind_4: Insect 28.2 66 0.0014 16.6 2.1 13 64-76 31-43 (52)
25 PRK09774 fec operon regulator 27.8 48 0.001 23.8 2.0 16 61-76 116-131 (319)
26 KOG2116|consensus 27.1 46 0.00099 27.1 1.8 54 22-75 551-612 (738)
27 PF15085 NPFF: Neuropeptide FF 25.7 28 0.00061 21.6 0.4 12 77-88 61-72 (110)
28 PF03967 PRCH: Photosynthetic 24.7 62 0.0013 20.9 1.8 14 63-76 61-74 (136)
29 PF09812 MRP-L28: Mitochondria 24.3 43 0.00093 22.0 1.1 16 61-76 138-153 (157)
30 PF03891 DUF333: Domain of unk 24.1 57 0.0012 17.3 1.4 13 63-75 29-41 (50)
31 cd02685 MIT_C MIT_C; domain fo 23.1 1.3E+02 0.0028 19.7 3.1 52 33-85 68-126 (148)
32 PF06651 DUF1163: Protein of u 22.0 64 0.0014 18.4 1.3 12 34-45 6-17 (70)
33 cd01806 Nedd8 Nebb8-like ubiq 21.3 77 0.0017 17.1 1.6 41 36-76 21-69 (76)
34 PF09739 MCM_bind: Mini-chromo 21.2 80 0.0017 19.8 1.8 23 65-88 21-45 (123)
No 1
>KOG0679|consensus
Probab=99.63 E-value=6.1e-17 Score=117.69 Aligned_cols=87 Identities=39% Similarity=0.749 Sum_probs=82.0
Q ss_pred CCcccccCCCCCCCcceeccCCCCCCcccccchHHHHHHHHhhhcccccCCchhhhhhcCCCCceEEcCCCcEEEE----
Q psy3521 1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLI---- 76 (88)
Q Consensus 1 ~i~~k~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~~~~~~~~yeLPDG~~i~l---- 76 (88)
+||+|++|+.|.++.+.++...++.+.||+.|+..++++++|+++|.|++.+++++.+.+.+.+.||||||++..+
T Consensus 211 ~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er 290 (426)
T KOG0679|consen 211 NIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAER 290 (426)
T ss_pred HhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcce
Confidence 4899999999999999999888999999999999999999999999999999999988889999999999999888
Q ss_pred -EecccCCCCCC
Q psy3521 77 -HIPTYLSNLPH 87 (88)
Q Consensus 77 -~~pE~LF~P~~ 87 (88)
++||.||+|+.
T Consensus 291 ~ripe~lF~Ps~ 302 (426)
T KOG0679|consen 291 FRIPEYLFKPSL 302 (426)
T ss_pred eecchhhcCcch
Confidence 99999999963
No 2
>PTZ00466 actin-like protein; Provisional
Probab=99.24 E-value=1.4e-11 Score=90.05 Aligned_cols=64 Identities=23% Similarity=0.263 Sum_probs=49.7
Q ss_pred CCCcccccchHHHHHHHHhhhcccccCCchhhhhh--cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 24 ~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
..+.+|......+++++|||++|||+.+...+... .....+.|+||||+.|.+ +|||+||+|+.
T Consensus 201 ~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~ 271 (380)
T PTZ00466 201 KNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSI 271 (380)
T ss_pred hcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCccc
Confidence 45556777778899999999999999884332221 123357899999999999 99999999974
No 3
>PTZ00452 actin; Provisional
Probab=99.23 E-value=1.3e-11 Score=89.96 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=49.2
Q ss_pred CCCcccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 24 ~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
..+.++....+.+++++|||++|||+.+..++.. . .....+.|+||||+.|.+ +|||+||+|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~ 266 (375)
T PTZ00452 195 ELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKL 266 (375)
T ss_pred hcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEEeehHHhcCcccccChhh
Confidence 4556666666788999999999999988433221 1 123457899999999999 99999999964
No 4
>KOG0677|consensus
Probab=99.21 E-value=1e-11 Score=87.78 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=52.2
Q ss_pred CCCCcccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521 23 PEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLP 86 (88)
Q Consensus 23 ~~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~ 86 (88)
...|+.|...++.+.+|+|||++|||+-|...++. + -..--++|+||||..|.+ .+||.||+|.
T Consensus 195 l~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~ 266 (389)
T KOG0677|consen 195 LRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPH 266 (389)
T ss_pred HhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccCchhhcCcc
Confidence 46788899999999999999999999977222222 1 124468999999999999 9999999995
No 5
>KOG0676|consensus
Probab=99.20 E-value=1.1e-11 Score=90.66 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCCCcccccchHHHHHHHHhhhcccccCCchhhhhh---cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 23 PEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI---LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 23 ~~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~---~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
.+.+.++......+|+++|||++|||+.+..++... .+....+|+||||+.|.+ +|||+||+|+.
T Consensus 191 ~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~i~i~~erf~~pE~lFqP~~ 263 (372)
T KOG0676|consen 191 RKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQKITIGNERFRCPEVLFQPSL 263 (372)
T ss_pred HhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCEEecCCcccccchhcCChhh
Confidence 456789999999999999999999999873333221 234466699999999998 99999999863
No 6
>PTZ00281 actin; Provisional
Probab=99.13 E-value=8.5e-11 Score=85.62 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=48.8
Q ss_pred CCCcccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 24 ~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
..+.++....+.+++++|||++|||+.+...+.. . .....+.|+||||+.|.+ .|||+||+|+.
T Consensus 196 ~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~ 267 (376)
T PTZ00281 196 ERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSF 267 (376)
T ss_pred hcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhh
Confidence 4455666677889999999999999977322221 1 123457899999999999 99999999963
No 7
>PTZ00004 actin-2; Provisional
Probab=99.07 E-value=2.1e-10 Score=83.59 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=46.5
Q ss_pred CcccccchHHHHHHHHhhhcccccCCchhhhhh---c--CCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 26 TQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI---L--NLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 26 ~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~---~--~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
+..+......+++++|||++|||+.+ ++++.. . ....+.|+||||+.|.+ +|||+||+|+.
T Consensus 198 ~~~~~~~~~~~~~~~iKe~~c~v~~d-~~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~ 268 (378)
T PTZ00004 198 GTTFTTTAEKEIVRDIKEKLCYIALD-FDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSL 268 (378)
T ss_pred CCCCCcHHHHHHHHHHhhcceeecCC-HHHHHhhhhcCccccceEEECCCCCEEEEcHHHeeCcccccChhh
Confidence 34444455678999999999999988 443321 1 12357899999999999 99999999964
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=98.80 E-value=3.8e-09 Score=76.48 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=50.2
Q ss_pred CcccccchHHHHHHHHhhhcccccCCchh--hhhhcCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 26 TQSWHNYSVKKVVQDFQQSVLQVSETPFD--EKSILNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 26 ~~s~~~~~~~~iv~~iKe~~c~V~~~~~~--~~~~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
+.++..+....+++++|+++|+|+.+... ...........|+||||+.+.+ ++||+||+|+.
T Consensus 208 ~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~ 276 (393)
T PF00022_consen 208 GESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSL 276 (393)
T ss_dssp TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGG
T ss_pred cccccchhhhccchhccchhhhcccccccccccccccccceeccccccccccccccccccccccccccc
Confidence 56777888899999999999999998553 1222456688999999999999 99999999964
No 9
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=98.55 E-value=9.9e-08 Score=68.95 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=45.4
Q ss_pred cccchHHHHHHHHhhhcccccCCchhhh----hhcCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 29 WHNYSVKKVVQDFQQSVLQVSETPFDEK----SILNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 29 ~~~~~~~~iv~~iKe~~c~V~~~~~~~~----~~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
+.......++++|||++|+|+.+...+. .......+.|+||||+.+.+ .+||+||+|+.
T Consensus 195 ~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~ 262 (371)
T cd00012 195 LNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSL 262 (371)
T ss_pred ccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhh
Confidence 4555667899999999999998733332 11234467899999999999 99999999963
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=98.54 E-value=1.6e-07 Score=67.80 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=44.7
Q ss_pred ccccchHHHHHHHHhhhcccccCCchhhhhh-------cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521 28 SWHNYSVKKVVQDFQQSVLQVSETPFDEKSI-------LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH 87 (88)
Q Consensus 28 s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~-------~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~ 87 (88)
.+......++++++||++|+|+.+ +..+.. .....+.|+||||+.+.+ .+||+||+|+.
T Consensus 194 ~~~~~~~~~~~~~iKe~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~ 264 (373)
T smart00268 194 QFNSSAEFEIVREIKEKLCYVAED-FEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPEL 264 (373)
T ss_pred CCCcHHHHHHHHHhhhheeeecCC-hHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchh
Confidence 344445678999999999999987 333221 123457899999999999 99999999953
No 11
>PTZ00280 Actin-related protein 3; Provisional
Probab=98.30 E-value=9.9e-07 Score=65.00 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=43.5
Q ss_pred CCcccccchHHHHHHHHhhhcccccCCchhhhhh--c---CCCCceEEcCC---Cc--EEEE-----EecccCCCCC
Q psy3521 25 VTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI--L---NLPPSHYEFPN---GY--HQLI-----HIPTYLSNLP 86 (88)
Q Consensus 25 ~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~--~---~~~~~~yeLPD---G~--~i~l-----~~pE~LF~P~ 86 (88)
.+.++......+++++|||++|||+.+ +..+.. . ....+.|++|| |. .|.+ +|||+||+|+
T Consensus 208 ~~~~~~~~~~~~~~~~iKe~~c~v~~d-~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~ 283 (414)
T PTZ00280 208 RGEPIPAEDILLLAQRIKEKYCYVAPD-IAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPE 283 (414)
T ss_pred cCCCCCcHHHHHHHHHHHHhcCcccCc-HHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChh
Confidence 344455445678999999999999987 433321 1 12356799998 33 7777 9999999995
No 12
>KOG0680|consensus
Probab=98.15 E-value=7.5e-07 Score=64.64 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCCcccccchHH---HHHHHHhhhcccccCCchhhhh--h-----cCCCCceEEcCCCc-------------------EE
Q psy3521 24 EVTQSWHNYSVK---KVVQDFQQSVLQVSETPFDEKS--I-----LNLPPSHYEFPNGY-------------------HQ 74 (88)
Q Consensus 24 ~~~~s~~~~~~~---~iv~~iKe~~c~V~~~~~~~~~--~-----~~~~~~~yeLPDG~-------------------~i 74 (88)
+...||+.+--+ .++.+|||.+||||.+ +.+.+ + .+.....|.|||=+ .|
T Consensus 194 KE~iSyR~lNvmdET~vVNeiKEdvcfVSqn-F~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii 272 (400)
T KOG0680|consen 194 KETISYRHLNVMDETYVVNEIKEDVCFVSQN-FKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQII 272 (400)
T ss_pred HHHhhhhhhcccchhhhhhhhhhheEEechh-hHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCccee
Confidence 445566655433 4899999999999987 43322 1 12234567777632 44
Q ss_pred EE-----EecccCCCCCC
Q psy3521 75 LI-----HIPTYLSNLPH 87 (88)
Q Consensus 75 ~l-----~~pE~LF~P~~ 87 (88)
+| .+||+||+|+.
T Consensus 273 ~L~nErF~IPEilF~Psd 290 (400)
T KOG0680|consen 273 TLTNERFTIPEILFSPSD 290 (400)
T ss_pred eecccccccchhhcChhh
Confidence 44 89999999973
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=96.38 E-value=0.0041 Score=46.94 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhhcc-------cccCCchhh---hhh----------------cCCCCceEEcCCCcEEEE------Eecc
Q psy3521 33 SVKKVVQDFQQSVL-------QVSETPFDE---KSI----------------LNLPPSHYEFPNGYHQLI------HIPT 80 (88)
Q Consensus 33 ~~~~iv~~iKe~~c-------~V~~~~~~~---~~~----------------~~~~~~~yeLPDG~~i~l------~~pE 80 (88)
...++++.+|+.+| |++.+..+. ... ......+|++|||..+.+ ++||
T Consensus 220 ~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE 299 (444)
T COG5277 220 YSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPE 299 (444)
T ss_pred ccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcch
Confidence 45789999999999 887552211 110 124478899999999999 8999
Q ss_pred cCCCCC
Q psy3521 81 YLSNLP 86 (88)
Q Consensus 81 ~LF~P~ 86 (88)
.||+|.
T Consensus 300 ~lF~pe 305 (444)
T COG5277 300 ILFKPE 305 (444)
T ss_pred hhcCCc
Confidence 999997
No 14
>KOG0678|consensus
Probab=92.17 E-value=0.07 Score=39.41 Aligned_cols=39 Identities=5% Similarity=-0.061 Sum_probs=25.8
Q ss_pred CCcceeccCCCCCCcccccchHHHHHHHHhhhcccccCC
Q psy3521 13 PPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSET 51 (88)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~~~~~~~iv~~iKe~~c~V~~~ 51 (88)
.-++..+.++-+++......+..+..+.|||.+||++.|
T Consensus 198 diT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPd 236 (415)
T KOG0678|consen 198 DITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPD 236 (415)
T ss_pred chhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcH
Confidence 333333333334445445566778999999999999987
No 15
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=74.98 E-value=0.47 Score=33.93 Aligned_cols=51 Identities=4% Similarity=-0.042 Sum_probs=31.2
Q ss_pred HHHHHHHhhhcccccCCchhhhh-hcCCCCceEEcCCCcEEEE-EecccCCCC
Q psy3521 35 KKVVQDFQQSVLQVSETPFDEKS-ILNLPPSHYEFPNGYHQLI-HIPTYLSNL 85 (88)
Q Consensus 35 ~~iv~~iKe~~c~V~~~~~~~~~-~~~~~~~~yeLPDG~~i~l-~~pE~LF~P 85 (88)
.+.++.+|+++|++..+...... ........|.+|++..|.- .+.|++|+|
T Consensus 203 ~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~ 255 (333)
T TIGR00904 203 EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEP 255 (333)
T ss_pred HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHH
Confidence 46799999999998754111111 1011123577888765544 777887765
No 16
>KOG0681|consensus
Probab=67.59 E-value=1.9 Score=33.92 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=9.8
Q ss_pred EecccCCCCCC
Q psy3521 77 HIPTYLSNLPH 87 (88)
Q Consensus 77 ~~pE~LF~P~~ 87 (88)
+|||++|+|+.
T Consensus 521 RvPEIiFqPsi 531 (645)
T KOG0681|consen 521 RVPEIIFQPSI 531 (645)
T ss_pred ccceeeecccc
Confidence 99999999973
No 17
>PF14122 YokU: YokU-like protein
Probab=61.94 E-value=6.6 Score=23.47 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=12.8
Q ss_pred CCCceEEcCCCc-EEEE
Q psy3521 61 LPPSHYEFPNGY-HQLI 76 (88)
Q Consensus 61 ~~~~~yeLPDG~-~i~l 76 (88)
.....+|||||+ .|.+
T Consensus 14 ~~tvyWeLpdGtraIeI 30 (87)
T PF14122_consen 14 ESTVYWELPDGTRAIEI 30 (87)
T ss_pred cceEEEEcCCCceEEEe
Confidence 446789999999 7777
No 18
>KOG0797|consensus
Probab=48.80 E-value=13 Score=29.36 Aligned_cols=54 Identities=9% Similarity=-0.036 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHhhhcccccCCchhhhhhcCCCCceEEcCCCcEEEE---------EecccCCCCCC
Q psy3521 30 HNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLI---------HIPTYLSNLPH 87 (88)
Q Consensus 30 ~~~~~~~iv~~iKe~~c~V~~~~~~~~~~~~~~~~~yeLPDG~~i~l---------~~pE~LF~P~~ 87 (88)
.+..+--+++++||+.|........-+. ..-.|.-||+.+... .+|=.||.|+.
T Consensus 333 ~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~----~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~l 395 (618)
T KOG0797|consen 333 LAPIDWLLLNQLKEKFCHLRAAELGVQL----TVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNL 395 (618)
T ss_pred cccccHHHHHHHHHHhccccHhhhhhhh----hhhhccCCCCcceeeeeeccchhhccchhhhhhhh
Confidence 3344556899999999998865333222 112344455555544 67777887753
No 19
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=43.56 E-value=6.3 Score=27.94 Aligned_cols=17 Identities=0% Similarity=0.090 Sum_probs=14.1
Q ss_pred HHHHHHHhhhcccccCC
Q psy3521 35 KKVVQDFQQSVLQVSET 51 (88)
Q Consensus 35 ~~iv~~iKe~~c~V~~~ 51 (88)
.+.++.+|+++|+++.+
T Consensus 205 ~~~ae~~K~~~~~~~~~ 221 (335)
T PRK13930 205 ERTAEEIKIEIGSAYPL 221 (335)
T ss_pred HHHHHHHHHHhhcCcCC
Confidence 36789999999998865
No 20
>PF09776 Mitoc_L55: Mitochondrial ribosomal protein L55; InterPro: IPR018615 Members of this family are involved in mitochondrial biogenesis and G2/M phase cell cycle progression. They form a component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.
Probab=43.29 E-value=23 Score=22.26 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=13.6
Q ss_pred CceEEcCCCcEEEEEecc
Q psy3521 63 PSHYEFPNGYHQLIHIPT 80 (88)
Q Consensus 63 ~~~yeLPDG~~i~l~~pE 80 (88)
......|||.+|++++-|
T Consensus 46 pv~lV~pDGSTI~Iry~E 63 (116)
T PF09776_consen 46 PVLLVRPDGSTINIRYHE 63 (116)
T ss_pred cEEEEecCCCEEEEeccC
Confidence 456689999999994443
No 21
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=32.42 E-value=39 Score=22.62 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=12.8
Q ss_pred CceEEcCCCcEEEE
Q psy3521 63 PSHYEFPNGYHQLI 76 (88)
Q Consensus 63 ~~~yeLPDG~~i~l 76 (88)
..+|+|+||..|.+
T Consensus 63 ~~tf~L~DGTKItV 76 (171)
T PF07481_consen 63 DMTFQLDDGTKITV 76 (171)
T ss_pred ceEEEeCCCCEEEE
Confidence 57899999999998
No 22
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=30.09 E-value=55 Score=15.98 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=15.7
Q ss_pred CceEEcCCCcEEEE---------EecccCCCC
Q psy3521 63 PSHYEFPNGYHQLI---------HIPTYLSNL 85 (88)
Q Consensus 63 ~~~yeLPDG~~i~l---------~~pE~LF~P 85 (88)
...|++ +|..+.+ .|.|.+|++
T Consensus 15 ~~~~~~-~~~~~~i~~vp~~~C~~CGE~~~~~ 45 (46)
T TIGR03831 15 TETYEY-GGELIVIENVPALVCPQCGEEYLDA 45 (46)
T ss_pred EEEEEe-CCEEEEEeCCCccccccCCCEeeCC
Confidence 345666 7777777 678888876
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=28.50 E-value=15 Score=26.04 Aligned_cols=17 Identities=0% Similarity=0.036 Sum_probs=13.7
Q ss_pred HHHHHHHhhhcccccCC
Q psy3521 35 KKVVQDFQQSVLQVSET 51 (88)
Q Consensus 35 ~~iv~~iKe~~c~V~~~ 51 (88)
.+.++.+|+.+|++..+
T Consensus 201 ~~~ae~iK~~~~~~~~~ 217 (334)
T PRK13927 201 ERTAERIKIEIGSAYPG 217 (334)
T ss_pred HHHHHHHHHHhhccCCC
Confidence 45789999999998753
No 24
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=28.23 E-value=66 Score=16.64 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=10.7
Q ss_pred ceEEcCCCcEEEE
Q psy3521 64 SHYEFPNGYHQLI 76 (88)
Q Consensus 64 ~~yeLPDG~~i~l 76 (88)
=+|..|||..+.+
T Consensus 31 Y~y~~pdG~~~~V 43 (52)
T PF00379_consen 31 YSYIDPDGQTRTV 43 (52)
T ss_pred EEEECCCCCEEEE
Confidence 3578899999888
No 25
>PRK09774 fec operon regulator FecR; Reviewed
Probab=27.78 E-value=48 Score=23.79 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=14.1
Q ss_pred CCCceEEcCCCcEEEE
Q psy3521 61 LPPSHYEFPNGYHQLI 76 (88)
Q Consensus 61 ~~~~~yeLPDG~~i~l 76 (88)
-+.+.+.||||..|.|
T Consensus 116 Ge~r~v~L~DGS~v~L 131 (319)
T PRK09774 116 GEVSRQRLEDGSLLTL 131 (319)
T ss_pred CceEEEEcCCCCEEEE
Confidence 3578999999999999
No 26
>KOG2116|consensus
Probab=27.12 E-value=46 Score=27.08 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=38.3
Q ss_pred CCCCCcccccchHHHHHHHHhhh---cccccCCchhhh-----hhcCCCCceEEcCCCcEEE
Q psy3521 22 LPEVTQSWHNYSVKKVVQDFQQS---VLQVSETPFDEK-----SILNLPPSHYEFPNGYHQL 75 (88)
Q Consensus 22 ~~~~~~s~~~~~~~~iv~~iKe~---~c~V~~~~~~~~-----~~~~~~~~~yeLPDG~~i~ 75 (88)
++-+|-.|.-....++...|||+ +.|++..+..+. ....+....+.||||-.|-
T Consensus 551 lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViL 612 (738)
T KOG2116|consen 551 LPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVIL 612 (738)
T ss_pred hhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEe
Confidence 46788888888888899999986 555554433321 1345667889999998764
No 27
>PF15085 NPFF: Neuropeptide FF
Probab=25.73 E-value=28 Score=21.62 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=9.9
Q ss_pred EecccCCCCCCC
Q psy3521 77 HIPTYLSNLPHY 88 (88)
Q Consensus 77 ~~pE~LF~P~~~ 88 (88)
+.|-.||+|++|
T Consensus 61 Rspa~LfQPQRF 72 (110)
T PF15085_consen 61 RSPAFLFQPQRF 72 (110)
T ss_pred CCcccccCcccc
Confidence 668899999875
No 28
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=24.73 E-value=62 Score=20.94 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=12.1
Q ss_pred CceEEcCCCcEEEE
Q psy3521 63 PSHYEFPNGYHQLI 76 (88)
Q Consensus 63 ~~~yeLPDG~~i~l 76 (88)
.+.|.||||.++.+
T Consensus 61 pKTF~L~~G~t~tv 74 (136)
T PF03967_consen 61 PKTFKLPHGRTVTV 74 (136)
T ss_dssp -EEEEETTTTEEEE
T ss_pred CCEEECCCCCeEEC
Confidence 69999999998887
No 29
>PF09812 MRP-L28: Mitochondrial ribosomal protein L28; InterPro: IPR019192 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].
Probab=24.25 E-value=43 Score=21.97 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.5
Q ss_pred CCCceEEcCCCcEEEE
Q psy3521 61 LPPSHYEFPNGYHQLI 76 (88)
Q Consensus 61 ~~~~~yeLPDG~~i~l 76 (88)
.+...|+.|||..+.+
T Consensus 138 PPi~~Y~~pdg~y~d~ 153 (157)
T PF09812_consen 138 PPIKNYEAPDGKYIDI 153 (157)
T ss_pred CCCCCCCCCCCCeeee
Confidence 4568999999998876
No 30
>PF03891 DUF333: Domain of unknown function (DUF333); InterPro: IPR005590 This family consists of bacterial proteins whose function has not been characterised.
Probab=24.07 E-value=57 Score=17.27 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=9.9
Q ss_pred CceEEcCCCcEEE
Q psy3521 63 PSHYEFPNGYHQL 75 (88)
Q Consensus 63 ~~~yeLPDG~~i~ 75 (88)
...-.||||..+.
T Consensus 29 ~g~C~lpdG~~~~ 41 (50)
T PF03891_consen 29 VGYCVLPDGRRCE 41 (50)
T ss_pred EeEEECCCCCEEe
Confidence 3567899998875
No 31
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=23.06 E-value=1.3e+02 Score=19.70 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhhcccccCCchhhhhhcCCCCceEEcCCCcEEEE-------EecccCCCC
Q psy3521 33 SVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLI-------HIPTYLSNL 85 (88)
Q Consensus 33 ~~~~iv~~iKe~~c~V~~~~~~~~~~~~~~~~~yeLPDG~~i~l-------~~pE~LF~P 85 (88)
...+.+.+||+++....-. +.=+...+.+.|...|-+|-.|.+ +.|+..|+.
T Consensus 68 ~Q~~~l~~i~~sl~~~gI~-~~~~f~~tiHDR~I~~~nGw~IkigRGLD~fq~~~~~fsi 126 (148)
T cd02685 68 QQIEALEEIKQSLASHGVE-FTWEFSDTIHDREIRTDNGWIIKIGRGLDYFKPPEGKFSL 126 (148)
T ss_pred HHHHHHHHHHHHHHhCCcE-EEEEECCCccceEEEecCCeEEEECCcccceeCCCCccch
Confidence 4556778888777654422 111111356788899999999999 777777764
No 32
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=21.97 E-value=64 Score=18.43 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhc
Q psy3521 34 VKKVVQDFQQSV 45 (88)
Q Consensus 34 ~~~iv~~iKe~~ 45 (88)
-.+|++||||+-
T Consensus 6 gk~Im~DIKEr~ 17 (70)
T PF06651_consen 6 GKDIMEDIKERK 17 (70)
T ss_pred HHHHHHHHHHhh
Confidence 457999999875
No 33
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=21.32 E-value=77 Score=17.08 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=24.9
Q ss_pred HHHHHHhhhcccccCCchhhhh--------hcCCCCceEEcCCCcEEEE
Q psy3521 36 KVVQDFQQSVLQVSETPFDEKS--------ILNLPPSHYEFPNGYHQLI 76 (88)
Q Consensus 36 ~iv~~iKe~~c~V~~~~~~~~~--------~~~~~~~~yeLPDG~~i~l 76 (88)
..+.++|+.++....-+.+.+. ..+..-..|.+.||..|++
T Consensus 21 ~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l 69 (76)
T cd01806 21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHL 69 (76)
T ss_pred CCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEE
Confidence 3578888888765432222221 1123346788999999887
No 34
>PF09739 MCM_bind: Mini-chromosome maintenance replisome factor; InterPro: IPR019140 This entry represents a family of proteins which are approximately 600 residues in length and contain alternating regions of conservation and low complexity. They are associated components of the mini-chromosome maintenance (MCM) complex that acts as a regulator of DNA replication. They bind to the MCM complex during late S phase and promotes the disassembly of the MCM complex from chromatin, thereby acting as a key regulator of pre-replication complex (pre-RC) unloading from replicated DNA. Can dissociate the MCM complex without addition of ATP; probably acts by destabilising interactions of each individual subunits of the MCM complex. Required for sister chromatid cohesion [, ].
Probab=21.17 E-value=80 Score=19.76 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=17.8
Q ss_pred eEEcCCCcEEEE--EecccCCCCCCC
Q psy3521 65 HYEFPNGYHQLI--HIPTYLSNLPHY 88 (88)
Q Consensus 65 ~yeLPDG~~i~l--~~pE~LF~P~~~ 88 (88)
.-.|+||.-|.+ ++-++ |.|..|
T Consensus 21 ~~~l~~~sLVRfRgMIQDm-~~pE~Y 45 (123)
T PF09739_consen 21 LHDLKPGSLVRFRGMIQDM-FDPEFY 45 (123)
T ss_pred HhhCCCCCEEEEEEEeecC-CCCEEe
Confidence 345899999999 77777 887655
Done!