Query psy3521
Match_columns 88
No_of_seqs 108 out of 1013
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 18:47:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb0_A Actin-related protein 4 99.6 1.5E-15 5E-20 113.3 4.3 73 15-87 224-306 (498)
2 1k8k_B ARP2, actin-like protei 98.6 3.6E-08 1.2E-12 70.8 4.4 60 27-86 202-269 (394)
3 2fxu_A Alpha-actin-1, actin, a 98.5 1.5E-07 5E-12 67.0 4.5 59 27-86 198-265 (375)
4 3dwl_A Actin-related protein 3 98.3 6.4E-08 2.2E-12 70.7 0.1 54 32-86 231-297 (427)
5 1k8k_A ARP3, actin-like protei 98.1 1.9E-06 6.6E-11 61.8 3.4 56 31-86 217-286 (418)
6 4am6_A Actin-like protein ARP8 97.7 2.6E-06 8.8E-11 65.4 -1.5 54 28-86 326-389 (655)
7 4fo0_A Actin-related protein 8 97.3 7.6E-05 2.6E-09 55.6 1.4 52 31-86 305-365 (593)
8 4fo0_A Actin-related protein 8 81.4 0.3 1E-05 36.2 0.0 26 61-86 409-439 (593)
9 3rri_A Glyoxalase/bleomycin re 25.9 30 0.001 19.5 1.4 12 65-76 114-125 (135)
10 3rhe_A NAD-dependent benzaldeh 24.4 33 0.0011 20.2 1.4 21 65-85 109-134 (148)
11 3hl6_A Pathogenicity island pr 21.7 9 0.00031 25.0 -1.6 21 64-84 88-110 (225)
12 3kt9_A Aprataxin; FHA domain, 21.0 58 0.002 18.9 2.0 19 63-81 14-33 (102)
13 4g6x_A Glyoxalase/bleomycin re 20.9 45 0.0015 19.5 1.6 14 66-79 138-152 (155)
14 4a5z_A MITD1, MIT domain-conta 20.9 1.2E+02 0.004 19.3 3.5 52 33-85 85-143 (163)
No 1
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.5e-15 Score=113.26 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=59.0
Q ss_pred cceeccCCCCCCcccccch-HHHHHHHHhhhcccccCC-chhhhh--hcCCCCceEEcCCCcEEEE------EecccCCC
Q psy3521 15 KWTRKKNLPEVTQSWHNYS-VKKVVQDFQQSVLQVSET-PFDEKS--ILNLPPSHYEFPNGYHQLI------HIPTYLSN 84 (88)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~-~~~iv~~iKe~~c~V~~~-~~~~~~--~~~~~~~~yeLPDG~~i~l------~~pE~LF~ 84 (88)
.+..+.+.++++.||..+. .++++++|||++|||+.+ .++++. ..+...+.|+||||+.|.+ +|||+||+
T Consensus 224 ~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~ 303 (498)
T 3qb0_A 224 EFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFL 303 (498)
T ss_dssp SCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTS
T ss_pred ccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHhhhCchhhCC
Confidence 3556666777888999998 566999999999999986 344432 2456789999999999999 89999999
Q ss_pred CCC
Q psy3521 85 LPH 87 (88)
Q Consensus 85 P~~ 87 (88)
|+.
T Consensus 304 P~~ 306 (498)
T 3qb0_A 304 PKE 306 (498)
T ss_dssp CCG
T ss_pred HhH
Confidence 963
No 2
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=98.60 E-value=3.6e-08 Score=70.83 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=44.5
Q ss_pred cccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521 27 QSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLP 86 (88)
Q Consensus 27 ~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~ 86 (88)
.++......+++++||+++|+|+.+...+.. . .+...+.|+||||+.+.+ +|||+||+|+
T Consensus 202 ~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~Lf~p~ 269 (394)
T 1k8k_B 202 YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPH 269 (394)
T ss_dssp CCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGG
T ss_pred CCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECCCCCEEEECchhhcChHhhCCch
Confidence 3444345678999999999999977322221 1 233457899999999999 8999999995
No 3
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=98.46 E-value=1.5e-07 Score=67.03 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=44.4
Q ss_pred cccccchHHHHHHHHhhhcccccCCchhhhh----hcCCCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521 27 QSWHNYSVKKVVQDFQQSVLQVSETPFDEKS----ILNLPPSHYEFPNGYHQLI-----HIPTYLSNLP 86 (88)
Q Consensus 27 ~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~----~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~ 86 (88)
.++......+++++||+++|+|+.+ +..+. ..+.....|+||||+.+.+ +|||+||+|+
T Consensus 198 ~~~~~~~~~~~~e~iK~~~~~v~~~-~~~e~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~lf~p~ 265 (375)
T 2fxu_A 198 YSFVTTAEREIVRDIKEKLCYVALD-FENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPS 265 (375)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCCCSS-HHHHHHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGG
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccc-HHHHHHhhcccCccCeEEECCCCCEEEEChhheechHhhCCCc
Confidence 3333334668999999999999977 43322 1233467899999999999 8999999994
No 4
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=98.33 E-value=6.4e-08 Score=70.71 Aligned_cols=54 Identities=13% Similarity=-0.027 Sum_probs=33.2
Q ss_pred chHHHHHHHHhhhcccccCCchhhhhh--c--CCCCceEEc--CCCc--EEEE-----EecccCCCCC
Q psy3521 32 YSVKKVVQDFQQSVLQVSETPFDEKSI--L--NLPPSHYEF--PNGY--HQLI-----HIPTYLSNLP 86 (88)
Q Consensus 32 ~~~~~iv~~iKe~~c~V~~~~~~~~~~--~--~~~~~~yeL--PDG~--~i~l-----~~pE~LF~P~ 86 (88)
....+++++|||++|||+.+ ++++.. . ....+.|+| |||. .|.+ +|||+||+|+
T Consensus 231 ~~~~~~~~~IKe~~cyv~~d-~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~ 297 (427)
T 3dwl_A 231 DSSLKTAERIKEECCYVCPD-IVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPE 297 (427)
T ss_dssp ---CHHHHHHHHHHCCCCSC-HHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGG
T ss_pred chhHHHHHHHHHhcCcccCC-HHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCch
Confidence 34568999999999999988 433321 1 112567889 9998 6666 6999999994
No 5
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=98.08 E-value=1.9e-06 Score=61.81 Aligned_cols=56 Identities=9% Similarity=-0.119 Sum_probs=41.0
Q ss_pred cchHHHHHHHHhhhcccccCCchhhhh----hcCCCCceEEcCCCc-----EEEE-----EecccCCCCC
Q psy3521 31 NYSVKKVVQDFQQSVLQVSETPFDEKS----ILNLPPSHYEFPNGY-----HQLI-----HIPTYLSNLP 86 (88)
Q Consensus 31 ~~~~~~iv~~iKe~~c~V~~~~~~~~~----~~~~~~~~yeLPDG~-----~i~l-----~~pE~LF~P~ 86 (88)
.....++++++|+++|+|+.+...+.. ........|+||||. .+.+ +|||+||+|+
T Consensus 217 ~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~ 286 (418)
T 1k8k_A 217 PEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPE 286 (418)
T ss_dssp GGGHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGG
T ss_pred CHHHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCc
Confidence 345678999999999999987322211 011223689999999 8888 7799999995
No 6
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=97.71 E-value=2.6e-06 Score=65.39 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHhhhccccc-CCchhhhhhcCCCCceEEcCCC----cEEEE-----EecccCCCCC
Q psy3521 28 SWHNYSVKKVVQDFQQSVLQVS-ETPFDEKSILNLPPSHYEFPNG----YHQLI-----HIPTYLSNLP 86 (88)
Q Consensus 28 s~~~~~~~~iv~~iKe~~c~V~-~~~~~~~~~~~~~~~~yeLPDG----~~i~l-----~~pE~LF~P~ 86 (88)
+|....+.+++++|||++|||+ .+ ...+.. ......|++ +++.+ +|||+||+|.
T Consensus 326 ~f~t~~e~eiVrdIKEk~CyVs~~D-i~~q~~----~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pe 389 (655)
T 4am6_A 326 KIDSKHGWLLAERLKKNFTTFQDAD-VAVQLY----NFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQ 389 (655)
T ss_dssp CTTSHHHHHHHHHHHHHHCCCCGGG-CCSEEE----EEEECCSSSCEEEEEEEESSHHHHHHHGGGSTH
T ss_pred CCCCcchHHHHHHHHHheEEEcccc-hhhhhh----cceeccCCCCCcceEEEECCeehhCchhcCChh
Confidence 5566678899999999999995 33 211110 011123554 35666 9999999995
No 7
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=97.25 E-value=7.6e-05 Score=55.60 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=38.8
Q ss_pred cchHHHHHHHHhhhcccccCCchhhhhhcCCCCceEEcCCCcEEEE---------EecccCCCCC
Q psy3521 31 NYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLI---------HIPTYLSNLP 86 (88)
Q Consensus 31 ~~~~~~iv~~iKe~~c~V~~~~~~~~~~~~~~~~~yeLPDG~~i~l---------~~pE~LF~P~ 86 (88)
...+.+++++|||++|||+.+....+ .....+.+|||..... .+||.||+|.
T Consensus 305 ~~~d~~~v~~iKe~~c~v~~d~~~~~----~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~ 365 (593)
T 4fo0_A 305 NKMDCLLLQHLKETFCHLDQDISGLQ----DHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPA 365 (593)
T ss_dssp CHHHHHHHHHHHHHHCBCCTTCCSCE----EEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGG
T ss_pred cchhHHHHHHHHHHhcccccchHHhh----hhhhhcccCCCCceeeEEeccchhhcCchhhcChh
Confidence 34567899999999999998732222 1235678899987665 7899999985
No 8
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=81.42 E-value=0.3 Score=36.20 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521 61 LPPSHYEFPNGYHQLI-----HIPTYLSNLP 86 (88)
Q Consensus 61 ~~~~~yeLPDG~~i~l-----~~pE~LF~P~ 86 (88)
...+.|++|||..+.+ .+||.||+|+
T Consensus 409 ~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~ 439 (593)
T 4fo0_A 409 ADRKSASKPIGFEGDLRGQSSDLPERLHSQE 439 (593)
T ss_dssp -------------------------------
T ss_pred cccccccCCCCcccccccccccCchhccCcc
Confidence 4568899999999999 9999999985
No 9
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=25.92 E-value=30 Score=19.46 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=10.4
Q ss_pred eEEcCCCcEEEE
Q psy3521 65 HYEFPNGYHQLI 76 (88)
Q Consensus 65 ~yeLPDG~~i~l 76 (88)
.+.=|||+.|.|
T Consensus 114 ~~~DPdGn~iel 125 (135)
T 3rri_A 114 FLIDPSNNLLEF 125 (135)
T ss_dssp EEECTTCCEEEE
T ss_pred EEECCCCCEEEE
Confidence 467799999999
No 10
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=24.38 E-value=33 Score=20.19 Aligned_cols=21 Identities=10% Similarity=-0.157 Sum_probs=10.2
Q ss_pred eEEcCCCcEEEE-----EecccCCCC
Q psy3521 65 HYEFPNGYHQLI-----HIPTYLSNL 85 (88)
Q Consensus 65 ~yeLPDG~~i~l-----~~pE~LF~P 85 (88)
.+.=|||+.+.| .+.+.+||-
T Consensus 109 ~~~DPdG~~iel~~~~~~a~~~~~~~ 134 (148)
T 3rhe_A 109 VGVDPDEHRLRIFCLKRTAENLYFQS 134 (148)
T ss_dssp EEECTTCCEEEEEEEC----------
T ss_pred EEECCCCCEEEEEEcChhHhhhhccC
Confidence 466799999999 556666653
No 11
>3hl6_A Pathogenicity island protein; unknown functio; 2.50A {Staphylococcus aureus subsp}
Probab=21.75 E-value=9 Score=25.03 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=16.5
Q ss_pred ceEEcCCCcEEEE--EecccCCC
Q psy3521 64 SHYEFPNGYHQLI--HIPTYLSN 84 (88)
Q Consensus 64 ~~yeLPDG~~i~l--~~pE~LF~ 84 (88)
..|+|+||..+.+ ..+..||.
T Consensus 88 ~gyelhD~~~~sISDMMA~~mF~ 110 (225)
T 3hl6_A 88 VGYELHDGKQLSISDMMASQLFE 110 (225)
T ss_dssp HCEECTTSCEECHHHHHHHHHHS
T ss_pred cceecCCCCcccHHHHHHHHhcc
Confidence 4599999999988 66666665
No 12
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=20.97 E-value=58 Score=18.90 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=15.6
Q ss_pred CceEEcCCCcEEEE-Eeccc
Q psy3521 63 PSHYEFPNGYHQLI-HIPTY 81 (88)
Q Consensus 63 ~~~yeLPDG~~i~l-~~pE~ 81 (88)
...+.||+|..+.+ |.||.
T Consensus 14 ~~~I~L~~g~~v~iGR~p~t 33 (102)
T 3kt9_A 14 HQRIRLPHLEAVVIGRGPET 33 (102)
T ss_dssp TCEEECCBTCEEEECSSTTT
T ss_pred CCcEEcCCCCcEEeccCCcc
Confidence 35789999999999 77774
No 13
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=20.94 E-value=45 Score=19.51 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=10.0
Q ss_pred EEcCCCcEEEE-Eec
Q psy3521 66 YEFPNGYHQLI-HIP 79 (88)
Q Consensus 66 yeLPDG~~i~l-~~p 79 (88)
|.=|||+.|.| +.+
T Consensus 138 f~DPdGn~iel~q~~ 152 (155)
T 4g6x_A 138 LDDTCGNLIQLMQIA 152 (155)
T ss_dssp EECSSSCEEEEEEC-
T ss_pred EECCCCCEEEEEEEC
Confidence 44599999998 554
No 14
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=20.89 E-value=1.2e+02 Score=19.31 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=35.4
Q ss_pred hHHHHHHHHhhhcccccCCchhhhhhcCCCCceEEcCCCcEEEE-------EecccCCCC
Q psy3521 33 SVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLI-------HIPTYLSNL 85 (88)
Q Consensus 33 ~~~~iv~~iKe~~c~V~~~~~~~~~~~~~~~~~yeLPDG~~i~l-------~~pE~LF~P 85 (88)
...+.+.+||+++...--. +.=+...+...|...|-+|-.|.+ +-|+-.|+.
T Consensus 85 ~Q~~~L~~ik~sL~~~gI~-l~~~fs~tiHDR~I~~dnGW~IkiGRGLD~fq~~~~~fsl 143 (163)
T 4a5z_A 85 QQSRGLQEIEESLRSHGVL-LEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSL 143 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCE-EEEEECTTCCCCEEEETTSEEEEETTTTCCBCCCSSTTCT
T ss_pred HHHHHHHHHHHHHHHCCCE-EEEEeCCCccceEEEecCCeEEEECCCccccccCCCcccc
Confidence 4567889999988764422 111112347789999999999999 557766764
Done!