RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3521
         (88 letters)



>gnl|CDD|200935 pfam00022, Actin, Actin. 
          Length = 367

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 19  KKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPF-DEKSILNLPPSHYEFPNGYHQLI 76
           +K L   T S++ Y+ ++VV+D ++S+  VS+ PF D  +  + P   YE P+GY  ++
Sbjct: 183 RKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYELPDGYVIIL 241


>gnl|CDD|179568 PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiporter;
           Provisional.
          Length = 504

 Score = 28.9 bits (65), Expect = 0.27
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 1   MVGAKEAIKDKEPPKWTR 18
           M   +E    +EPP   R
Sbjct: 432 MSTCREVRDGEEPPLLVR 449


>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase.
          Members of this protein family are the homodimeric,
          pyridoxal phosphate enzyme diaminopropionate
          ammonia-lyase, which adds water to remove two amino
          groups, leaving pyruvate.
          Length = 396

 Score = 25.1 bits (55), Expect = 5.2
 Identities = 9/36 (25%), Positives = 12/36 (33%)

Query: 17 TRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETP 52
            KK       S  +    + V+ F QS      TP
Sbjct: 8  DNKKATNGTDLSLLSKEEAEKVRAFHQSFPGYQPTP 43


>gnl|CDD|133872 PHA00380, PHA00380, tail protein.
          Length = 599

 Score = 25.3 bits (55), Expect = 5.7
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 33  SVKKVVQDFQQSVLQVSETPFDEKSILNLPP--------SHYEFPNGY 72
           S   +V     +VLQ+      +  I N+PP        + +++ NGY
Sbjct: 461 SATGMVSTAGNAVLQIQGMQAKQADIANMPPQLVKMGGNTAFDYGNGY 508


>gnl|CDD|238737 cd01460, vWA_midasin, VWA_Midasin: Midasin is a member of the AAA
           ATPase family. The proteins of this family are unified
           by their common archetectural organization that is based
           upon a conserved ATPase domain. The AAA domain of
           midasin contains six tandem AAA protomers. The AAA
           domains in midasin is followed by a D/E rich domain that
           is following by a VWA domain. The members of this
           subgroup have a conserved MIDAS motif. The function of
           this domain is not exactly known although it has been
           speculated to play a crucial role in midasin function.
          Length = 266

 Score = 25.0 bits (55), Expect = 6.0
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 39  QDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNLP 86
            D +QS+L +    F       + P   EFP  Y+ ++     L+ LP
Sbjct: 205 PDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVR---DLNQLP 249


>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase.  This model represents
           the D-hydantoinase (dihydropyrimidinase) which primarily
           converts 5,6-dihydrouracil to 3-ureidopropanoate but
           also acts on dihydrothymine and hydantoin. The enzyme is
           a metalloenzyme.
          Length = 454

 Score = 25.0 bits (55), Expect = 7.1
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 20  KNLPEVTQSWHNYSVKKVVQD--FQQSVLQVSETPFDE 55
           ++L E  ++WH  +  K V D  F   +   ++   +E
Sbjct: 98  ESLTEALETWHEKAEGKSVIDYGFHMMITDWNDHVLEE 135


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0776    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,423,647
Number of extensions: 324832
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 9
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)