RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3521
         (88 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.12
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 38/88 (43%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           ++     I+D     W            W + +  K+      +++        E S+  
Sbjct: 332 IIAES--IRD-GLATWDN----------WKHVNCDKL-----TTII--------ESSLNV 365

Query: 61  LPPS----HYE----FPNGYHQLIHIPT 80
           L P+     ++    FP       HIPT
Sbjct: 366 LEPAEYRKMFDRLSVFPPS----AHIPT 389



 Score = 27.9 bits (61), Expect = 0.47
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPS 64
          E  +  H Y  K ++  F+ + +      FD K + ++P S
Sbjct: 10 ETGE--HQYQYKDILSVFEDAFVD----NFDCKDVQDMPKS 44


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,354,895
Number of extensions: 59902
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)