RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3528
         (218 letters)



>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members of
           this family are implicated in bringing cargo forward
           from the ER and binding to coat proteins by their
           cytoplasmic domains. This domain corresponds closely to
           the beta-strand rich GOLD domain described in. The GOLD
           domain is always found combined with lipid- or
           membrane-association domains.
          Length = 178

 Score =  163 bits (414), Expect = 4e-51
 Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 6/180 (3%)

Query: 30  ELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPT---KEIIYRQVKSQ 86
            LTFEL    +ECF+E++ + T V   +QV++GG  D+D +I  P      I  ++ +  
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNLDIDFTITDPDGNGNVIYSKEDRKS 60

Query: 87  FDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQ 146
                F     G Y  CFSN FST+S K V  D +VG+E +     E    +  +E   +
Sbjct: 61  GGKFSFTATESGEYKFCFSNSFSTFSSKTVSFDIKVGEEAKDIAKKEK---LDPLEEELK 117

Query: 147 EIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFF 206
           ++   LN I   Q + R REA+ R+  E  N RV+WWS I+ +V++  S LQVY +K FF
Sbjct: 118 KLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYYLKRFF 177


>gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed.
          Length = 787

 Score = 29.7 bits (67), Expect = 1.3
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 28  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 87
           AV        +    +  DIK     I +  ++ G  YDV   +E+   EI+  ++K  F
Sbjct: 108 AVRRLRLSVRDIPRAWEADIKYEFRYIYDNGLIPGMPYDVKNGLESVEPEILVEEIKKAF 167

Query: 88  D 88
            
Sbjct: 168 K 168


>gnl|CDD|223121 COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and
           related decarboxylases [Coenzyme metabolism].
          Length = 477

 Score = 28.8 bits (65), Expect = 2.4
 Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 60  VTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSHKVVYMD 119
           V G     D  +    +EI    +K Q      V L       CF      +   VV + 
Sbjct: 307 VPGKPPHEDALMGVALEEIFLPLLKKQVPEVVDVRLPPEG---CF------HLLAVVSIK 357


>gnl|CDD|181407 PRK08383, PRK08383, putative monovalent cation/H+ antiporter
           subunit E; Reviewed.
          Length = 168

 Score = 27.1 bits (60), Expect = 4.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 181 MWWSSIEFVVVLLASTLQVYIVKNFFASRNERQYKPLR 218
           + WS  E +  L+ + +  Y  +N    +  R   P+R
Sbjct: 24  LLWSPEELIAGLIFAAIVGYATRNIIGEKATRFLNPIR 61


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score = 27.8 bits (62), Expect = 5.7
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 21  ILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDV-DVSIEAPTKEII 79
           +L Q V A E  FEL D  R+ +  D           + +  G+ D+ +VS       ++
Sbjct: 307 MLQQAVVAGERVFELMDGPRQQYGNDD----------RPLQSGRIDIDNVSFAYRDDNLV 356

Query: 80  YRQVKSQFDTHQFVTLVEGT 99
            + +     +  FV LV  T
Sbjct: 357 LQNINLSVPSRGFVALVGHT 376


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,920,781
Number of extensions: 1004344
Number of successful extensions: 1119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 16
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)