RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3528
         (218 letters)



>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
           biosynthesis, oxidized vitamin E, lipid-binding,
           transport, transcription regulation; HET: VTQ; 1.95A
           {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
           1o6u_A* 1olm_E*
          Length = 403

 Score = 28.8 bits (64), Expect = 1.7
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 91  QFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQV 122
                  G YV+ F N +S    K V    +V
Sbjct: 352 TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV 383


>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A
           {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB:
           1vix_A
          Length = 417

 Score = 28.3 bits (63), Expect = 2.4
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 14  IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 73
            GF+ L  +   V   E+ + + D  R+ F    ++   +  +          +++ IE 
Sbjct: 258 EGFYHLASMKGTVDRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIED 317

Query: 74  PTKEIIYRQVKSQFDTHQFV 93
                 Y  ++ +   H  +
Sbjct: 318 S-----YYNMREKVVEHPHI 332


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 2.5
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 35   LADNARECFFEDIKRNTSVILE---F-----QVVTGGKYDVDVSIEAPTKEIIYRQVKS 85
             +  A +   E + + T  ++E   +     Q V  G  D+  +++  T  + + +++ 
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG--DL-RALDTVTNVLNFIKLQK 1876


>3mop_K IRAK-2, interleukin-1 receptor-associated kinase-like 2; death
           domain complex, helical symmetry, single-stranded HELI
           assembly; 3.40A {Homo sapiens}
          Length = 111

 Score = 25.9 bits (56), Expect = 6.6
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 155 IIDYQTHHRLREAQGRKRAEDLNERVMWW 183
           +I   T  R  ++    +   +   ++WW
Sbjct: 34  VITDLTQLRKIKSMEWVQGVSITRELLWW 62


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 26.2 bits (57), Expect = 7.8
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 29/109 (26%)

Query: 22  LHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYR 81
           L +IV  +EL+       +                F V+    ++  ++IE P  EI++ 
Sbjct: 144 LIRIVSGLELSDTKQKGKK----------------FLVIAYEPFEN-IAIELPPNEILFS 186

Query: 82  QVKSQFDTHQFVTLVEGTYVVCFSNEFSTY---SHKVVYMDFQVGDEPQ 127
           +                   V   N+  T+     K+ Y+ F      Q
Sbjct: 187 ENNDM---------DNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQ 226


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,263,759
Number of extensions: 184811
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 5
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)