RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3528
         (218 letters)



>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF),
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 6/96 (6%)

Query: 29  VELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFD 88
           VE             F     +    +  +   G +       E        ++  S   
Sbjct: 18  VEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLP----NQRYNSHLV 73

Query: 89  --THQFVTLVEGTYVVCFSNEFSTYSHKVVYMDFQV 122
                      G YV+ F N +S    K V    +V
Sbjct: 74  PEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV 109


>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 24.6 bits (53), Expect = 7.4
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 147 EIHKSLNTIIDYQTHHRLREAQGRKRAEDLNER--VMWW 183
           E  + ++  I +  +  L+    ++    L ER   +WW
Sbjct: 128 EYSQQVSYAIRFAENVELKTDAAKEIYRVLMERKNPVWW 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 792,532
Number of extensions: 34575
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)