BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3529
         (97 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|D3ZTX0|TMED7_RAT Transmembrane emp24 domain-containing protein 7 OS=Rattus
           norvegicus GN=Tmed7 PE=1 SV=1
          Length = 226

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1   MESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERAGRPALSLGARIAKIVPSAAD 60
           MES+   IH++L ++IDYQTH RLREAQGR RAEDLN R      S+G  +  +V S   
Sbjct: 149 MESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAY--WSVGEALILLVVSIGQ 206

Query: 61  AALIRLYPTGTQITNSR 77
             L++ + +  + T +R
Sbjct: 207 VFLLKSFFSDKRTTTTR 223


>sp|Q9Y3B3|TMED7_HUMAN Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens
           GN=TMED7 PE=1 SV=2
          Length = 224

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1   MESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERAGRPALSLGARIAKIVPSAAD 60
           MES+   IH++L ++IDYQTH RLREAQGR RAEDLN R      S+G  +  +V S   
Sbjct: 147 MESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAY--WSVGEALILLVVSIGQ 204

Query: 61  AALIRLYPTGTQITNSR 77
             L++ + +  + T +R
Sbjct: 205 VFLLKSFFSDKRTTTTR 221


>sp|Q6AY25|TMED3_RAT Transmembrane emp24 domain-containing protein 3 OS=Rattus
           norvegicus GN=Tmed3 PE=1 SV=1
          Length = 221

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 1   MESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERAGRPALSLGARIAKIVPSAAD 60
           MES+   IH++L T+ID QTH+RLREAQ R RAEDLN R      S+G  IA  V S + 
Sbjct: 144 MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVS--YWSVGETIALFVVSFSQ 201

Query: 61  AALIRLYPT 69
             L++ + T
Sbjct: 202 VLLLKSFFT 210


>sp|Q9Y3Q3|TMED3_HUMAN Transmembrane emp24 domain-containing protein 3 OS=Homo sapiens
           GN=TMED3 PE=1 SV=1
          Length = 217

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 1   MESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERAGRPALSLGARIAKIVPSAAD 60
           MES+   IH++L T+ID QTH+RLREAQ R RAEDLN R      S+G  IA  V S + 
Sbjct: 140 MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVS--YWSVGETIALFVVSFSQ 197

Query: 61  AALIRLYPT 69
             L++ + T
Sbjct: 198 VLLLKSFFT 206


>sp|Q78IS1|TMED3_MOUSE Transmembrane emp24 domain-containing protein 3 OS=Mus musculus
           GN=Tmed3 PE=2 SV=1
          Length = 221

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 1   MESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERAGRPALSLGARIAKIVPSAAD 60
           MES+   IH++L T+ID QTH+RLREAQ R RAEDLN R      S+G  IA  V S + 
Sbjct: 144 MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVS--YWSVGETIALFVVSFSQ 201

Query: 61  AALIRLYPT 69
             L++ + T
Sbjct: 202 VLLLKSFFT 210


>sp|B1GZQ6|LON_UNCTG Lon protease OS=Uncultured termite group 1 bacterium phylotype
           Rs-D17 GN=lon PE=3 SV=1
          Length = 802

 Score = 28.9 bits (63), Expect = 8.7,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 31/65 (47%)

Query: 26  EAQGRKRAEDLNERAGRPALSLGARIAKIVPSAADAALIRLYPTGTQITNSRNLTVDANI 85
           E  G     ++N+  G+ +L L  ++  ++  +A AAL  +  +  ++    N+  + + 
Sbjct: 616 EVGGETLTIEVNKMGGKNSLVLTGKLGDVMKESAQAALTYVRSSSQKLKIDENMFSNTDF 675

Query: 86  RIHAP 90
            +H P
Sbjct: 676 HVHVP 680


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.129    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,347,814
Number of Sequences: 539616
Number of extensions: 996955
Number of successful extensions: 3439
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3432
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)