Query psy3529
Match_columns 97
No_of_seqs 108 out of 667
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:58:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lsj_B DNA polymerase kappa; R 40.3 8.5 0.00029 19.3 0.0 11 64-74 6-16 (26)
2 3okq_A BUD site selection prot 24.6 1.7E+02 0.0058 19.9 5.7 39 9-49 89-127 (141)
3 1yyp_B DNA polymerase, POL; pr 22.9 17 0.00058 18.2 -0.1 10 85-94 3-12 (26)
4 1ytz_T Troponin T; muscle, THI 19.0 2E+02 0.0067 18.5 5.5 40 2-41 48-87 (107)
5 2knc_A Integrin alpha-IIB; tra 18.4 1.5E+02 0.0051 16.9 4.1 14 60-73 31-44 (54)
6 1j1d_B Troponin T, TNT; THIN f 17.4 2.1E+02 0.0073 18.3 5.5 40 2-41 48-87 (106)
7 3ogl_Q JAZ1 incomplete degron 17.2 19 0.00067 17.1 -0.6 11 63-73 9-19 (21)
8 2l8s_A Integrin alpha-1; trans 16.3 1.7E+02 0.0059 16.7 4.1 13 61-73 29-41 (54)
9 2zuq_A Disulfide bond formatio 14.1 46 0.0016 22.8 0.5 25 43-69 143-167 (176)
10 2q12_A DIP13 alpha, DCC-intera 13.7 2.9E+02 0.01 19.2 4.7 39 2-40 223-261 (265)
No 1
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=40.34 E-value=8.5 Score=19.30 Aligned_cols=11 Identities=0% Similarity=-0.046 Sum_probs=8.5
Q ss_pred HHHccCCcccc
Q psy3529 64 IRLYPTGTQIT 74 (97)
Q Consensus 64 LR~fF~~kk~~ 74 (97)
=++||++|+.-
T Consensus 6 K~SFFdKKRse 16 (26)
T 2lsj_B 6 KKSFFDKKRSE 16 (26)
Confidence 47899998754
No 2
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=24.58 E-value=1.7e+02 Score=19.93 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhhHHHHH
Q psy3529 9 HKSLNTIIDYQTHHRLREAQGRKRAEDLNERAGRPALSLGA 49 (97)
Q Consensus 9 ~~~L~~I~~~Q~y~R~RE~~~R~~~EstnsRV~~~~wSi~q 49 (97)
+.-|+.|-++|.++...|.---++-|+...-.- -|+.++
T Consensus 89 E~EL~~VceEQqfl~~QedL~~DL~eDL~ka~e--tf~lVe 127 (141)
T 3okq_A 89 EAELDKVCEEQQFLTLQEELILDLKEDLGKALE--TFDLIK 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 456788999999999999999999988776555 445444
No 3
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=22.92 E-value=17 Score=18.21 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=8.5
Q ss_pred eeeecCCccc
Q psy3529 85 IRIHAPPSFM 94 (97)
Q Consensus 85 ~~~~~~~~~~ 94 (97)
.|||-||.|+
T Consensus 3 ~RiYl~~~Fl 12 (26)
T 1yyp_B 3 RRLHLEPAFL 12 (26)
T ss_pred ceEecCHHHH
Confidence 5899999987
No 4
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=18.96 E-value=2e+02 Score=18.50 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhh
Q psy3529 2 ESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERAG 41 (97)
Q Consensus 2 e~si~~L~~~L~~I~~~Q~y~R~RE~~~R~~~EstnsRV~ 41 (97)
.+.+++|++.+..+..+---+..+-.+.-.-.+.+|.||.
T Consensus 48 ~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (107)
T 1ytz_T 48 RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Confidence 4667889999988877755565665566566677777776
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.39 E-value=1.5e+02 Score=16.92 Aligned_cols=14 Identities=7% Similarity=-0.275 Sum_probs=8.6
Q ss_pred HHHHHHHccCCccc
Q psy3529 60 DAALIRLYPTGTQI 73 (97)
Q Consensus 60 Qv~~LR~fF~~kk~ 73 (97)
-+.+---||+.++.
T Consensus 31 ~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 31 LAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHTTTTCC
T ss_pred HHHHHcCcccCCCC
Confidence 34444579987764
No 6
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=17.40 E-value=2.1e+02 Score=18.30 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhh
Q psy3529 2 ESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERAG 41 (97)
Q Consensus 2 e~si~~L~~~L~~I~~~Q~y~R~RE~~~R~~~EstnsRV~ 41 (97)
.+.+.+|++.+..+..+---+..+-.+.-.-.+.+|.||.
T Consensus 48 ~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (106)
T 1j1d_B 48 REKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHH
Confidence 4567788888888777755555565555556667777876
No 7
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=17.17 E-value=19 Score=17.13 Aligned_cols=11 Identities=0% Similarity=-0.052 Sum_probs=7.7
Q ss_pred HHHHccCCccc
Q psy3529 63 LIRLYPTGTQI 73 (97)
Q Consensus 63 ~LR~fF~~kk~ 73 (97)
-|.+|++++|.
T Consensus 9 SLqRFleKRk~ 19 (21)
T 3ogl_Q 9 SLHRFLEKRKD 19 (26)
T ss_pred HHHHHHHHhhc
Confidence 46788887653
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=16.35 E-value=1.7e+02 Score=16.73 Aligned_cols=13 Identities=8% Similarity=-0.294 Sum_probs=7.8
Q ss_pred HHHHHHccCCccc
Q psy3529 61 AALIRLYPTGTQI 73 (97)
Q Consensus 61 v~~LR~fF~~kk~ 73 (97)
+.+---||+.++.
T Consensus 29 ~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 29 ALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHTTSCCS
T ss_pred HHHHcCcccCCCc
Confidence 3344478977753
No 9
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=14.15 E-value=46 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccC
Q psy3529 43 PALSLGARIAKIVPSAADAALIRLYPT 69 (97)
Q Consensus 43 ~~wSi~q~~vlI~vs~~Qv~~LR~fF~ 69 (97)
|.||++-.+++.++++++++ +++++
T Consensus 143 p~wsli~F~~~~~~~~~~~~--~~~~~ 167 (176)
T 2zuq_A 143 PQWLLGIFIAYLIVAVLVVI--SQPFK 167 (176)
T ss_dssp HHHHHHHHHHHHHHHTTTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhc
Confidence 57888877777777777665 44443
No 10
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=13.69 E-value=2.9e+02 Score=19.22 Aligned_cols=39 Identities=13% Similarity=-0.019 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhh
Q psy3529 2 ESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERA 40 (97)
Q Consensus 2 e~si~~L~~~L~~I~~~Q~y~R~RE~~~R~~~EstnsRV 40 (97)
+..+..|...+..++.++...+..-.+-+...++....|
T Consensus 223 ~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~~~~~ 261 (265)
T 2q12_A 223 EEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPL 261 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 556778888888888888777766555555556555443
Done!