Query psy3529
Match_columns 97
No_of_seqs 108 out of 667
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 18:58:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3529.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3529hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5d2 f.23.11.1 (D:261-307) 40.0 15 0.0011 19.4 3.1 33 48-82 11-43 (47)
2 d1ppjd2 f.23.11.1 (D:196-241) 17.2 69 0.0051 16.4 3.1 20 49-68 12-31 (46)
3 d1oedc_ f.36.1.1 (C:) Acetylch 8.2 1.3E+02 0.0093 18.9 2.9 12 38-51 230-241 (260)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 7.2 1.5E+02 0.011 14.2 3.5 25 43-67 3-27 (34)
5 d1ew0a_ d.110.3.2 (A:) Histidi 6.1 82 0.0059 17.1 0.8 24 15-38 4-27 (130)
6 d1gvnb_ c.37.1.21 (B:) Plasmid 5.2 1.7E+02 0.012 17.9 2.0 24 64-92 19-42 (273)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 5.1 2.2E+02 0.016 13.8 2.0 18 36-55 12-29 (37)
8 d2b3ja1 c.97.1.2 (A:1-151) tRN 5.0 43 0.0031 20.4 -1.1 8 64-71 141-148 (151)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.9 1E+02 0.0075 15.9 0.7 9 53-61 49-57 (64)
10 d1oedb_ f.36.1.1 (B:) Acetylch 4.9 2.6E+02 0.019 17.3 3.0 57 1-59 181-239 (250)
No 1
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.97 E-value=15 Score=19.40 Aligned_cols=33 Identities=3% Similarity=-0.008 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccccceeee
Q psy3529 48 GARIAKIVPSAADAALIRLYPTGTQITNSRNLTVD 82 (97)
Q Consensus 48 ~q~~vlI~vs~~Qv~~LR~fF~~kk~~~~~~~~~~ 82 (97)
+..++++++..++.+|+|+|=- ....|||+-+|
T Consensus 11 ~K~~~i~s~l~~~~~y~KR~kW--s~lKsRKi~y~ 43 (47)
T d3cx5d2 11 LKTVIILSSLYLLSIWVKKFKW--AGIKTRKFVFN 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--cccccceeeeC
Confidence 4566777777888999998742 22344555554
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.18 E-value=69 Score=16.35 Aligned_cols=20 Identities=0% Similarity=-0.248 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q psy3529 49 ARIAKIVPSAADAALIRLYP 68 (97)
Q Consensus 49 q~~vlI~vs~~Qv~~LR~fF 68 (97)
..+++.++..+.+|+.|++=
T Consensus 12 Kv~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555666777777753
No 3
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.23 E-value=1.3e+02 Score=18.92 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=6.5
Q ss_pred hhhhhhhHHHHHHH
Q psy3529 38 ERAGRPALSLGARI 51 (97)
Q Consensus 38 sRV~~~~wSi~q~~ 51 (97)
+|+. .|-++-.+
T Consensus 230 DRlf--l~lF~i~~ 241 (260)
T d1oedc_ 230 DRLS--MFIITPVM 241 (260)
T ss_dssp HHHH--HHHHHHHH
T ss_pred HHHH--HHHHHHHH
Confidence 3667 66554443
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.22 E-value=1.5e+02 Score=14.17 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc
Q psy3529 43 PALSLGARIAKIVPSAADAALIRLY 67 (97)
Q Consensus 43 ~~wSi~q~~vlI~vs~~Qv~~LR~f 67 (97)
|.|-+....-+.++++.-+++--+|
T Consensus 3 PLWlv~tv~G~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 3 PLWIVATVAGMGVIVIVGLFFYGAY 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEeeehhhhhhHhheeeeeeeee
Confidence 6888887777777777766665443
No 5
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=6.10 E-value=82 Score=17.09 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHhHhh
Q psy3529 15 IIDYQTHHRLREAQGRKRAEDLNE 38 (97)
Q Consensus 15 I~~~Q~y~R~RE~~~R~~~Estns 38 (97)
+.+.+.-++.+|++.+.+.|+++.
T Consensus 4 l~~~e~~l~~~e~~~~~i~~~~~~ 27 (130)
T d1ew0a_ 4 MLETEDVVRARDAHLRSILDTVPD 27 (130)
T ss_dssp HHHHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344556677777778877776544
No 6
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=5.17 E-value=1.7e+02 Score=17.85 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=15.9
Q ss_pred HHHccCCcccccccceeeecceeeecCCc
Q psy3529 64 IRLYPTGTQITNSRNLTVDANIRIHAPPS 92 (97)
Q Consensus 64 LR~fF~~kk~~~~~~~~~~~~~~~~~~~~ 92 (97)
++.++..++....++ .+++++||.
T Consensus 19 ~~~~~~~~~~~~~P~-----~ilL~GpPG 42 (273)
T d1gvnb_ 19 LEELIQGKKAVESPT-----AFLLGGQPG 42 (273)
T ss_dssp HHHHHTTCCCCSSCE-----EEEEECCTT
T ss_pred HHHHHhcccCCCCCE-----EEEEECCCC
Confidence 455666666554444 488999995
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.10 E-value=2.2e+02 Score=13.76 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=12.2
Q ss_pred HhhhhhhhhHHHHHHHHHHH
Q psy3529 36 LNERAGRPALSLGARIAKIV 55 (97)
Q Consensus 36 tnsRV~~~~wSi~q~~vlI~ 55 (97)
.|.--. +|+++-++|+.+
T Consensus 12 LNrtsL--y~GlLlifvl~v 29 (37)
T d2axtl1 12 LNRTSL--YLGLLLILVLAL 29 (37)
T ss_dssp CCHHHH--HHHHHHHHHHHH
T ss_pred cchhhH--HHHHHHHHHHHH
Confidence 355556 899887777644
No 8
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}
Probab=5.03 E-value=43 Score=20.41 Aligned_cols=8 Identities=0% Similarity=0.077 Sum_probs=3.9
Q ss_pred HHHccCCc
Q psy3529 64 IRLYPTGT 71 (97)
Q Consensus 64 LR~fF~~k 71 (97)
++.||++|
T Consensus 141 ~~~Ff~~~ 148 (151)
T d2b3ja1 141 LTTFFKNL 148 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555443
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.92 E-value=1e+02 Score=15.94 Aligned_cols=9 Identities=11% Similarity=-0.278 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy3529 53 KIVPSAADA 61 (97)
Q Consensus 53 lI~vs~~Qv 61 (97)
+++++++-.
T Consensus 49 ~~~~~~~~~ 57 (64)
T d2iuba2 49 MGVIAVIMV 57 (64)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444333
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.92 E-value=2.6e+02 Score=17.27 Aligned_cols=57 Identities=7% Similarity=-0.079 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhHhhhhhhhhHHHHHHHHHHHHHHH
Q psy3529 1 MESSTQEIHKSLNTIIDYQTHHRLREAQGR--KRAEDLNERAGRPALSLGARIAKIVPSAA 59 (97)
Q Consensus 1 me~si~~L~~~L~~I~~~Q~y~R~RE~~~R--~~~EstnsRV~~~~wSi~q~~vlI~vs~~ 59 (97)
....++++.+.++.+.+..+..+..++... ...-..=+|+. +|-++-.+++..+++.
T Consensus 181 ~~~~~~~i~~~v~~i~~~~~~~~~~~~~~~EW~~vA~VlDRlf--l~lF~l~~vi~t~~i~ 239 (250)
T d1oedb_ 181 LPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLF--LYVFFVICSIGTFSIF 239 (250)
T ss_dssp -----------------------------------CHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Done!