RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3529
         (97 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.040
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 7/31 (22%)

Query: 26 EAQGRKRAED-LN----ERAGRPALSLGARI 51
          E Q  K+ +  L     + A  PAL++ A +
Sbjct: 18 EKQALKKLQASLKLYADDSA--PALAIKATM 46



 Score = 28.0 bits (61), Expect = 0.32
 Identities = 4/20 (20%), Positives = 12/20 (60%), Gaps = 3/20 (15%)

Query: 81 VDANIRIHAP---PSFMVAA 97
          + A+++++A    P+  + A
Sbjct: 25 LQASLKLYADDSAPALAIKA 44


>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
           structural genomics consortium, SGC; HET: MTA; 1.82A
           {Homo sapiens}
          Length = 233

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 22  HRLREAQGRKRAEDLNERAGRPALSLGARIAKIVPSAADAALIRLYP 68
             +    G   A + + R+GR  ++L  +   I+P   DA     Y 
Sbjct: 96  SDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR 142


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 23  RL--REAQGRKRAEDLNERAGR 42
           RL   +A  +   ++  E+A +
Sbjct: 97  RLQELDAASKVMEQEWREKAKK 118


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.129    0.354 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,461,764
Number of extensions: 77839
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 8
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)