BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy353
(1363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VX91|UBR1_DROME E3 ubiquitin-protein ligase UBR1 OS=Drosophila melanogaster GN=UBR1
PE=2 SV=2
Length = 1824
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1033 (45%), Positives = 646/1033 (62%), Gaps = 78/1033 (7%)
Query: 31 QCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWS-------FDEN 83
+CSS + +W+ K Q GTL +D E K P + ++ D + F E+
Sbjct: 16 ECSSP--LKEWRLKRQAGTLDRSDIIEFLKRESPKYFDYQTSATVKDTNVITLKCMFKES 73
Query: 84 KVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVL 143
+ + D + EF+ +P +K+ N +VCG+VFK GEPTY+CRECG+D TCVL
Sbjct: 74 LAKEEIIDVVVEFMLGDNPSSALEKLRLEGNTATVCGKVFKNGEPTYSCRECGVDPTCVL 133
Query: 144 CVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHESGSILPPD 203
CV+CFK+S HR HKYKM TS GGCCDCGD EAWKK+ YC++H+ + ES IL
Sbjct: 134 CVNCFKRSAHRFHKYKMSTSGGGGCCDCGDDEAWKKDQYCELHLANRKNPLES-KILTDA 192
Query: 204 LAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEF 263
+ +R + F ++L + L ++ P LQ
Sbjct: 193 VLERVEICFGAILAFCVSYL------------EIEPNASLQC------------------ 222
Query: 264 HTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRS 323
LD V V + +CTVLYNDE HTF+QVI TL +
Sbjct: 223 ----------------LDGNVEGGQV-------DGAQYCTVLYNDESHTFDQVIQTLTKI 259
Query: 324 LKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIER--------FTSRHGNRPIKV 375
KC KDA+E V IDREGRA VKC F C LK IE ++ N+ ++
Sbjct: 260 AKCRAKDAMEIVAAIDREGRAVVKCDTFEECNKLKVSIENQMILPTSLVSTARNNQSLRT 319
Query: 376 AVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSIVEGILVKDSQL 435
+V++ +A Q +A++LL W Q+ L FR FSE L ++ + + IL D +L
Sbjct: 320 SVLHIGAVACQQFALQLLGWFQEFLVRHYLFRKTFSE--LVQRKQETFCIRHILEYDVKL 377
Query: 436 WKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIY 495
WK AR WHRL ISGMLMEY++K A+ F+++Y +I++DFI DDHDH+FSI S+SVQ++
Sbjct: 378 WKTARTCWHRLLISGMLMEYDNKMILAQEFSRRYATIVEDFISDDHDHAFSIVSLSVQLF 437
Query: 496 TVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASF-KRAQYILYDLR 554
TVP++AH+LIAHE + LL TF K + K L F +NI + +F KRA YILYDLR
Sbjct: 438 TVPSIAHHLIAHEGIFDKLLHTFYHVAIEKFIRNKTLHFSKNIASLTFFKRANYILYDLR 497
Query: 555 YLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHI 614
YLL + PD + +LR GF G + L+ +L+ MQGM+ +TRQ GQHM+YEPEWE AFNLHI
Sbjct: 498 YLLSLKPDVLSNDLRNGFLEGCRALMRVLNVMQGMESMTRQTGQHMDYEPEWECAFNLHI 557
Query: 615 KLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQ-LGEVREVGDHSVACLHYD 673
KLA I+ + W D ++L K Y+ TM+ L ++ I G+ + + ++V DH CL YD
Sbjct: 558 KLATTISQVIDWASGDVKLLRKLYKMTMRALVSNSFIVGGEKVMQPKKVADHVANCLVYD 617
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVM 733
+S QPVSIHLPLSRF AG+Y+HL +L++ + ++ +LTP ++IEPVL TQ M
Sbjct: 618 ISVQPVSIHLPLSRFFAGIYLHLGAHDLTYDGLQTETE-ALSIKLTPREIIEPVLCTQAM 676
Query: 734 ISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKF 793
I+QV AG+WRRNGY+LL+Q+YFY NV+CR EMLD+DI LQIGASL+ESNEFLIHVLN+F
Sbjct: 677 IAQVGAGLWRRNGYTLLHQLYFYRNVRCRVEMLDRDIACLQIGASLMESNEFLIHVLNRF 736
Query: 794 NLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKK 853
N I W+ N+ S N + I + S+ +EFL LLI+I GER+MPG+ V +D ++K
Sbjct: 737 NTIPWLQENYWSLLSGNEMNDDIIREASIFDEFLELLIVIIGERWMPGVSMVTEEDRLRK 796
Query: 854 EIIQQLCIKPLPHSELNKALPD--DSNHETGLERVINEIADFKKPTQSSGKGVYELKPEF 911
EIIQ LCIKP HSEL++ALPD N + E VIN +A FKKP + KGVYELK
Sbjct: 797 EIIQLLCIKPYSHSELSRALPDGNSGNSDNVFEEVINTVAVFKKPVGADSKGVYELKEHL 856
Query: 912 YDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVM 971
+N++FYHY++E+ S++EE QR+RRKA K+L C PPP LP L P F+ + N+LQC V
Sbjct: 857 LKEFNMYFYHYTKEDKSKAEELQRERRKAKKQLVCCPPPMLPKLTPAFTPMANILQCPVF 916
Query: 972 LHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQH 1031
L++ SL++ER++N +RSF+E+ L K+LHL+GYA+ EE S +Y F +F +R++++ I +
Sbjct: 917 LNICSLIMERALNAYSRSFTESHLQKVLHLLGYAIQEELSEHYPFLSFYERSQEYGILEK 976
Query: 1032 IEELCSSPRVEAH 1044
+EEL PR+EAH
Sbjct: 977 LEELARCPRLEAH 989
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 126/172 (73%), Gaps = 4/172 (2%)
Query: 1027 NIEQHIEELCSSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSR 1086
+I++ +E+ C + +V +PL RL L DD+S+LIN+VS CPN++RE+ +
Sbjct: 1641 HIDREVEQRCQPDARRSLQVEPCLRPLP--RLKVLCDDFSDLINSVSDIFCPNNEREEMK 1698
Query: 1087 NPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASP 1146
P +CLICG +LC QSYCCQ EL K+SVGACT+H+H CGA VG+FLR+R+C+V++L
Sbjct: 1699 TPTMCLICGLILCGQSYCCQPELG-KVSVGACTHHAHACGAEVGIFLRIRDCQVVYLGR- 1756
Query: 1147 NRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISR 1198
+GCF+ PPYLD+YGETD GLRRGNPLRL + Y+K+ WL HG+H EI+R
Sbjct: 1757 GKGCFVPPPYLDEYGETDMGLRRGNPLRLSQAAYRKIYLQWLGHGLHGEIAR 1808
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 1282 FDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAH 1338
D+YGETD GLRRGNPLRL + Y+K+ WL HG+H EI+R + ++ QW H
Sbjct: 1767 LDEYGETDMGLRRGNPLRLSQAAYRKIYLQWLGHGLHGEIARLNDNANVAAAAQWHH 1823
>sp|Q6WKZ8|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2
Length = 1755
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/1059 (40%), Positives = 633/1059 (59%), Gaps = 102/1059 (9%)
Query: 16 IGSDMDVEQQL--PVFIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLL----SP 69
+ S+M+ E Q ++CS+ + W Q T + +H VP + +P
Sbjct: 1 MASEMEPEVQAIDRSLLECSAEEIAGRWLQ----ATDLNREVYQHLAHCVPKIYCRGPNP 56
Query: 70 EPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPT 129
P+ ++ Q+IL +E +IC P F K+ Q + P +CGRVFK+GEPT
Sbjct: 57 FPQK-------EDTLAQHILLGPMEWYICAEDPALGFPKLEQANKPSHLCGRVFKVGEPT 109
Query: 130 YNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIG 189
Y+CR+C +D TCVLC++CF S HR+H+Y+M TS GG CDCGD EAWK+ PYC
Sbjct: 110 YSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYC------ 163
Query: 190 TQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSH 249
Q+ +L+ S V+ + P + L EDV+ TY+
Sbjct: 164 ----------------QKHKLSSSEVVE--------EEDPLVHLS-----EDVIARTYN- 193
Query: 250 NSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDE 309
++ F +LT + +P DL+V + SD + +L+NDE
Sbjct: 194 --------IFAIMFRYAVDILTWEKESELPEDLEV----------AEKSDTYYCMLFNDE 235
Query: 310 FHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHG 369
HT+EQVI TL +++ C+QK+AI F T +DR+GR +V+ +F +C+ K+ I R TSR
Sbjct: 236 VHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCDQAKTVIVRNTSRQ- 294
Query: 370 NRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPD---LSIVE 426
+P+KV V++S V AHQ + ++ L+WL V+GYS+ R + +V L+E PD S+V+
Sbjct: 295 TKPLKVQVMHSSVAAHQNFGLKALSWLGSVIGYSDGLRRILCQVGLQE-GPDGENSSLVD 353
Query: 427 GILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFS 486
+++ DS+LWK AR +H+LF+S +LM+ + KK FA F K Y + +DF++DDH+ + S
Sbjct: 354 RLMLNDSKLWKGARSVYHQLFMSSLLMDLKYKKLFALRFAKNYRQLQRDFMEDDHERAVS 413
Query: 487 IGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFK-- 544
+ ++SVQ +T PTLA L+ E+++ +++ F+ + + + + +FER +FK
Sbjct: 414 VTALSVQFFTAPTLARMLLTEENLMTVIIKAFMDHLKHR-DAQGRFQFERYTALQAFKFR 472
Query: 545 RAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEP 604
R Q ++ DL+Y+L P W+ ELR+ F G L+LL MQGMD +TRQVGQH+E EP
Sbjct: 473 RVQSLILDLKYVLISKPTEWSDELRQKFLQGFDAFLELLKCMQGMDPITRQVGQHIEMEP 532
Query: 605 EWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLC-ADEGIDLGQLGEVREVG 663
EWE+AF L +KL VI++ WC D+++LI+AY+ + L G G+ +
Sbjct: 533 EWEAAFTLQMKLTHVISMVQDWCALDEKVLIEAYKKCLAVLTQCHGGFTDGEQPITLSIC 592
Query: 664 DHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQL 723
HSV + Y VS + VSIHLP+SR LAGL++ L K +++ ELL S L+P L
Sbjct: 593 GHSVETIRYCVSQEKVSIHLPISRLLAGLHVLLSKSEVAYKFPELLP----LSELSPPML 648
Query: 724 IEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESN 783
IE LR V+ +QVHAGMWRRNG+SL+NQIY+YHNVKCR EM DKDI++LQ G S+++ N
Sbjct: 649 IEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKDIVMLQTGVSMMDPN 708
Query: 784 EFLIHVLNKFNLINWVYVNFESNSLKN--PEEESIRQTISLVEEFLHLLILITGERYMPG 841
FL+ +L++F L + ++ ++Q +L+EE L+L+I++ GER+ PG
Sbjct: 709 HFLMIMLSRFELYQLFSTPDYGKRFSSEVTHKDVVQQNNTLIEEMLYLIIMLVGERFNPG 768
Query: 842 IGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSG 901
+G+VA+ D IK+EII QL IKP+ HSEL K+LP+D N ETG+E VI +A FKKP + G
Sbjct: 769 VGQVAATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVIESVAHFKKPGLT-G 827
Query: 902 KGVYELKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSM 961
+G+YELKPE +N++FYH+SR E S++EE QRK ++ KE +PPP LPP P F+
Sbjct: 828 RGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRENKEDTALPPPALPPFCPLFAS 887
Query: 962 VTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEE-------SGNY 1014
+ N+LQCDVML++M +L+ ++ ++SE+ L ++LHLIG AL EE+ G+
Sbjct: 888 LVNILQCDVMLYIMGTILQWAVEHHGSAWSESMLQRVLHLIGMALQEEKHHLENAVEGHV 947
Query: 1015 QFFTFTDRAEKWNIEQH--------IEELCSSPRVEAHK 1045
Q FTFT + K H +E L ++P +EAHK
Sbjct: 948 QTFTFTQKISKPGDAPHNSPSILAMLETLQNAPSLEAHK 986
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 98/156 (62%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 1052 PLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFF 1111
P N+LI+LP+DYS LIN S F+CP S + SR P LCL+CG +LCSQSYCCQ EL
Sbjct: 1594 PRGANKLIDLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQAELEG 1653
Query: 1112 KMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGN 1171
+ VGACT H++ CG+G G+FLRVREC+VLFLA +GCF SPPYLDDYGETDQGLRRGN
Sbjct: 1654 E-DVGACTAHTYSCGSGAGIFLRVRECQVLFLAGKTKGCFYSPPYLDDYGETDQGLRRGN 1712
Query: 1172 PLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLI 1207
PL LC+ER++K+Q+LW H I EEI + EA+ L+
Sbjct: 1713 PLHLCQERFRKIQKLWQQHSITEEIGHAQEANQTLV 1748
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%)
Query: 1282 FDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAH 1338
DDYGETDQGLRRGNPL LC+ER++K+Q+LW H I EEI + EA+ L+ W H
Sbjct: 1698 LDDYGETDQGLRRGNPLHLCQERFRKIQKLWQQHSITEEIGHAQEANQTLVGIDWQH 1754
>sp|Q8IWV8|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1
Length = 1755
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/1048 (39%), Positives = 627/1048 (59%), Gaps = 108/1048 (10%)
Query: 29 FIQCSSTNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLL----SPEPKSSCLDWSFDENK 84
++CS+ + W Q T + +H +VP + +P P+ ++
Sbjct: 16 LLECSAEEIAGKWLQ----ATDLTREVYQHLAHYVPKIYCRGPNPFPQK-------EDML 64
Query: 85 VQNILFDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLC 144
Q++L +E ++C P F K+ Q + P +CGRVFK+GEPTY+CR+C +D TCVLC
Sbjct: 65 AQHVLLGPMEWYLCGEDPAFGFPKLEQANKPSHLCGRVFKVGEPTYSCRDCAVDPTCVLC 124
Query: 145 VDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHESGSILPPDL 204
++CF S HR+H+Y+M TS GG CDCGD EAWK+ PYC H + T + E
Sbjct: 125 MECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHELNTSEIEE--------- 175
Query: 205 AQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFH 264
+ P + L EDV+ TY+ ++ F
Sbjct: 176 ---------------------EEDPLVHLS-----EDVIARTYN---------IFAITFR 200
Query: 265 TFEQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSL 324
++LT + +P DL++ SD + +L+NDE HT+EQVI TL +++
Sbjct: 201 YAVEILTWEKESELPADLEM----------VEKSDTYYCMLFNDEVHTYEQVIYTLQKAV 250
Query: 325 KCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIA 384
C+QK+AI F T +DR+GR +V+ +F +CE KS I R TSR +P+KV V++S ++A
Sbjct: 251 NCTQKEAIGFATTVDRDGRRSVRYGDFQYCEQAKSVIVRNTSRQ-TKPLKVQVMHSSIVA 309
Query: 385 HQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPD---LSIVEGILVKDSQLWKAARL 441
HQ + ++LL+WL ++GYS+ R + +V L+E PD S+V+ +++ DS+LWK AR
Sbjct: 310 HQNFGLKLLSWLGSIIGYSDGLRRILCQVGLQE-GPDGENSSLVDRLMLSDSKLWKGARS 368
Query: 442 HWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLA 501
+H+LF+S +LM+ + KK FA F K Y + +DF++DDH+ + S+ ++SVQ +T PTLA
Sbjct: 369 VYHQLFMSSLLMDLKYKKLFAVRFAKNYQQLQRDFMEDDHERAVSVTALSVQFFTAPTLA 428
Query: 502 HYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFK--RAQYILYDLRYLLGV 559
LI E+++ I++ TF+ R + + + +FER +FK R Q ++ DL+Y+L
Sbjct: 429 RMLITEENLMSIIIKTFMDH-LRHRDAQGRFQFERYTALQAFKFRRVQSLILDLKYVLIS 487
Query: 560 PPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPV 619
P W+ ELR+ F G L+LL MQGMD +TRQVGQH+E EPEWE+AF L +KL V
Sbjct: 488 KPTEWSDELRQKFLEGFDAFLELLKCMQGMDPITRQVGQHIEMEPEWEAAFTLQMKLTHV 547
Query: 620 ITLFLQWCGTDKEILIKAYRATMKTLC-ADEGIDLGQLGEVREVGDHSVACLHYDVSTQP 678
I++ WC +D+++LI+AY+ + L G G+ + HSV + Y VS +
Sbjct: 548 ISMMQDWCASDEKVLIEAYKKCLAVLMQCHGGYTDGEQPITLSICGHSVETIRYCVSQEK 607
Query: 679 VSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVH 738
VSIHLP+SR LAGL++ L K +++ ELL S L+P LIE LR V+ +QVH
Sbjct: 608 VSIHLPVSRLLAGLHVLLSKSEVAYKFPELLP----LSELSPPMLIEHPLRCLVLCAQVH 663
Query: 739 AGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINW 798
AGMWRRNG+SL+NQIY+YHNVKCR EM DKD+++LQ G S+++ N FL+ +L++F L
Sbjct: 664 AGMWRRNGFSLVNQIYYYHNVKCRREMFDKDVVMLQTGVSMMDPNHFLMIMLSRFEL--- 720
Query: 799 VYVNFESN------SLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIK 852
Y F + S + ++ ++Q +L+EE L+L+I++ GER+ PG+G+V + D IK
Sbjct: 721 -YQIFSTPDYGKRFSSEITHKDVVQQNNTLIEEMLYLIIMLVGERFSPGVGQVNATDEIK 779
Query: 853 KEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFY 912
+EII QL IKP+ HSEL K+LP+D N ETG+E VI +A FKKP +G+G+YELKPE
Sbjct: 780 REIIHQLSIKPMAHSELVKSLPEDENKETGMESVIEAVAHFKKPGL-TGRGMYELKPECA 838
Query: 913 DGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVML 972
+N++FYH+SR E S++EE QRK ++ +E +PPP LPP P F+ + N+LQ DVML
Sbjct: 839 KEFNLYFYHFSRAEQSKAEEAQRKLKRQNREDTALPPPVLPPFCPLFASLVNILQSDVML 898
Query: 973 HVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESG-------NYQFFTFTDRAEK 1025
+M +L+ ++ ++SE+ L ++LHLIG AL EE+ + FTFT + K
Sbjct: 899 CIMGTILQWAVEHNGYAWSESMLQRVLHLIGMALQEEKQHLENVTEEHVVTFTFTQKISK 958
Query: 1026 --------WNIEQHIEELCSSPRVEAHK 1045
+I +E L ++P +E HK
Sbjct: 959 PGEAPKNSPSILAMLETLQNAPYLEVHK 986
Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
Query: 1050 RKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTEL 1109
R P E N+LINLP+DYS LIN S F+CP S + SR P LCL+CG +LCSQSYCCQTEL
Sbjct: 1592 RYPRESNKLINLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQTEL 1651
Query: 1110 FFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRR 1169
+ VGACT H++ CG+GVG+FLRVREC+VLFLA +GCF SPPYLDDYGETDQGLRR
Sbjct: 1652 EGE-DVGACTAHTYSCGSGVGIFLRVRECQVLFLAGKTKGCFYSPPYLDDYGETDQGLRR 1710
Query: 1170 GNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLI 1207
GNPL LCKER+KK+Q+LW H + EEI + EA+ L+
Sbjct: 1711 GNPLHLCKERFKKIQKLWHQHSVTEEIGHAQEANQTLV 1748
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 1282 FDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAH 1338
DDYGETDQGLRRGNPL LCKER+KK+Q+LW H + EEI + EA+ L+ W H
Sbjct: 1698 LDDYGETDQGLRRGNPLHLCKERFKKIQKLWHQHSVTEEIGHAQEANQTLVGIDWQH 1754
>sp|Q8IWV7|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1
Length = 1749
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/1009 (36%), Positives = 557/1009 (55%), Gaps = 89/1009 (8%)
Query: 53 TDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQM 112
T F H VP + E D E VQ +F LE ++ P+ +K+
Sbjct: 37 TAFLHHLAQLVPEIYFAEMDP---DLEKQEESVQMSIFTPLEWYLFGEDPDICLEKLKH- 92
Query: 113 DNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCG 172
+CGRVFK GE TY+CR+C +D TCVLC+DCF+ S H+NH+YKM TS GG CDCG
Sbjct: 93 SGAFQLCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVHKNHRYKMHTSTGGGFCDCG 152
Query: 173 DVEAWKKEPYCDVHIIGTQKRHESGSILP--PDLAQRARLTFSSVLRYAYQLLTTDYGPS 230
D EAWK P+C H G + S P ++ +AR F SV++Y ++ +
Sbjct: 153 DTEAWKTGPFCVNHEPGRAGTIKENSRCPLNEEVIVQARKIFPSVIKYVVEMTIWEEEKE 212
Query: 231 IPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVL 290
+P +L++ + N +C VL+NDE H+
Sbjct: 213 LPPELQIREK---------NERYYC-VLFNDEHHS------------------------- 237
Query: 291 QITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSN 350
++ VI +L R+L C +A T ID+EGR AVK
Sbjct: 238 ----------------------YDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGA 275
Query: 351 FSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLF 410
++ C++ K +I+ + P+ V V++S ++AHQ +A+RL +W+ K++ YS FR +F
Sbjct: 276 YAACQEAKEDIKSHSENVSQHPLHVEVLHSEIMAHQKFALRLGSWMNKIMSYSSDFRQIF 335
Query: 411 SEVCLEEKAPDLS---IVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTK 467
+ CL E+ PD ++ +++ D++L+K AR H L S ME E KK FA F K
Sbjct: 336 CQACLREE-PDSENPCLISRLMLWDAKLYKGARKILHELIFSSFFMEMEYKKLFAMEFVK 394
Query: 468 KYGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLN 527
Y + K++I DDHD S SI ++SVQ++TVPTLA +LI ++V+ ++ T + L+
Sbjct: 395 YYKQLQKEYISDDHDRSISITALSVQMFTVPTLARHLIEEQNVISVITETLLEVLPEYLD 454
Query: 528 KKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQ 587
+ K F+ R ++ DL+Y+L P WT LR F G + L +L+ MQ
Sbjct: 455 RNNKFNFQ-GYSQDKLGRVYAVICDLKYILISKPTIWTERLRMQFLEGFRSFLKILTCMQ 513
Query: 588 GMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCA 647
GM+E+ RQVGQH+E +P+WE+A + ++L ++ +F +WC D+E+L+ AY+ K +
Sbjct: 514 GMEEIRRQVGQHIEVDPDWEAAIAIQMQLKNILLMFQEWCACDEELLLVAYKECHKAVMR 573
Query: 648 DEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE 707
+ V + HS+ Y VS VSIHLPLSR LAGL++ L + E
Sbjct: 574 CSTSFISSSKTVVQSCGHSLETKSYRVSEDLVSIHLPLSRTLAGLHVRLSRLGAVSRLHE 633
Query: 708 LLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLD 767
+S F E L+E LR V+++QV A MWRRNG SL++Q+++Y +VKCR EM D
Sbjct: 634 FVS----FEDFQVEVLVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYD 689
Query: 768 KDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFL 827
KDII+LQIGASL++ N+FL+ VL ++ L + ++ +++ I+Q +L+EE L
Sbjct: 690 KDIIMLQIGASLMDPNKFLLLVLQRYELAEAF-----NKTISTKDQDLIKQYNTLIEEML 744
Query: 828 HLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVI 887
+LI I GERY+PG+G V ++ +EII LCI+P+PHS + K LP++ N+ETGLE VI
Sbjct: 745 QVLIYIVGERYVPGVGNVTKEEVTMREIIHLLCIEPMPHSAIAKNLPENENNETGLENVI 804
Query: 888 NEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECV 947
N++A FKKP SG GVYELK E +N++FYHYS+ + S++E Q+KRRK + E +
Sbjct: 805 NKVATFKKPG-VSGHGVYELKDESLKDFNMYFYHYSKTQHSKAEHMQKKRRKQENKDEAL 863
Query: 948 PPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALH 1007
PPP P P FS V NLL CD+M++++ V ER+I+ + ++E L H++ L
Sbjct: 864 PPPPPPEFCPAFSKVINLLNCDIMMYILRTVFERAIDTDSNLWTEGMLQMAFHILALGLL 923
Query: 1008 E---------EESGNYQFFTFTDR--AEKWNIEQHIEELCSSPRVEAHK 1045
E EE + F+ R + NI+ +E+L P++E K
Sbjct: 924 EEKQQLQKAPEEEVTFDFYHKASRLGSSAMNIQMLLEKLKGIPQLEGQK 972
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1050 RKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTEL 1109
R P + N LI LPDDYS L+N S F CP S ++ ++P LCL CG +LCSQ+ CCQ E+
Sbjct: 1586 RYPRKRNSLIELPDDYSCLLNQASHFRCPRSADDERKHPVLCLFCGAILCSQNICCQ-EI 1644
Query: 1110 FFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRR 1169
VGAC +H+ CGAGV +FL++REC V+ + RGC PYLD+YGETD GL+R
Sbjct: 1645 VNGEEVGACIFHALHCGAGVCIFLKIRECRVVLVEGKARGCAYPAPYLDEYGETDPGLKR 1704
Query: 1170 GNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNL 1206
GNPL L +ERY+KL +W H I EEI+RS E + L
Sbjct: 1705 GNPLHLSRERYRKLHLVWQQHCIIEEIARSQETNQML 1741
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 1282 FDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQW 1336
D+YGETD GL+RGNPL L +ERY+KL +W H I EEI+RS E + L W
Sbjct: 1692 LDEYGETDPGLKRGNPLHLSRERYRKLHLVWQQHCIIEEIARSQETNQMLFGFNW 1746
>sp|O70481|UBR1_MOUSE E3 ubiquitin-protein ligase UBR1 OS=Mus musculus GN=Ubr1 PE=1 SV=2
Length = 1757
Score = 633 bits (1632), Expect = e-180, Method: Compositional matrix adjust.
Identities = 362/1011 (35%), Positives = 559/1011 (55%), Gaps = 90/1011 (8%)
Query: 53 TDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKVSQM 112
T F H VP + E D E VQ + LE ++ P+ +K+
Sbjct: 37 TAFLHHLAQLVPEIYFAEMDP---DLEKQEESVQMSILTPLEWYLFGEDPDICLEKLKH- 92
Query: 113 DNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCG 172
+CG+VFK GE TY+CR+C +D TCVLC+DCF+ S H+NH+YKM TS GG CDCG
Sbjct: 93 SGAFQLCGKVFKSGETTYSCRDCAIDPTCVLCMDCFQSSVHKNHRYKMHTSTGGGFCDCG 152
Query: 173 DVEAWKKEPYCDVHIIGTQKRHESGSILP--PDLAQRARLTFSSVLRYAYQLLTTDYGPS 230
D EAWK P+C H G + P ++ +AR F SV++Y ++ +
Sbjct: 153 DTEAWKTGPFCVDHEPGRAGTTKESLHCPLNEEVIAQARRIFPSVIKYIVEMTIWEEEKE 212
Query: 231 IPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVL 290
+P +L++ ++ + VL+NDE H+
Sbjct: 213 LPPELQI----------REKNERYYCVLFNDEHHS------------------------- 237
Query: 291 QITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSN 350
++ VI +L R+L C +A T ID+EGR AVK
Sbjct: 238 ----------------------YDHVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGV 275
Query: 351 FSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFRMLF 410
++ C++ K +I+ + P+ V V++SVV+AHQ +A+RL +W+ K++ YS FR +F
Sbjct: 276 YATCQEAKEDIKSHSENVSQHPLHVEVLHSVVMAHQKFALRLGSWMNKIMSYSSDFRQIF 335
Query: 411 SEVCLEEK--APDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKK 468
+ CL E+ + + ++ +++ D++L+K AR H L S ME E KK FA F K
Sbjct: 336 CQACLVEEPGSENPCLISRLMLWDAKLYKGARKILHELIFSSFFMEMEYKKLFAMEFVKY 395
Query: 469 YGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNK 528
Y + K++I DDH+ S SI ++SVQ+ TVPTLA +LI ++V+ ++ T + L++
Sbjct: 396 YKQLQKEYISDDHERSISITALSVQMLTVPTLARHLIEEQNVISVITETLLEVLPEYLDR 455
Query: 529 KKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQG 588
K F+ R ++ DL+Y+L P WT LR F G + L +L+ MQG
Sbjct: 456 NNKFNFQ-GYSQDKLGRVYAVICDLKYILISKPVIWTERLRAQFLEGFRSFLKILTCMQG 514
Query: 589 MDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCAD 648
M+E+ RQVGQH+E +P+WE+A + ++L ++ +F +WC D+++L+ AY+ K +
Sbjct: 515 MEEIRRQVGQHIEVDPDWEAAIAIQMQLKNILLMFQEWCACDEDLLLVAYKECHKAVMRC 574
Query: 649 EGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSREL 708
+ V ++ HS+ Y VS VSIHLPLSR LAGL++ L + L SR
Sbjct: 575 STNFMSSTKTVVQLCGHSLETKSYKVSEDLVSIHLPLSRTLAGLHVRLSR--LGAISR-- 630
Query: 709 LSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDK 768
L + F E L+E LR V+++QV A MWRRNG SL++Q+++Y +VKCR EM DK
Sbjct: 631 LHEFVPFDGFQVEVLVEYPLRCLVLVAQVVAEMWRRNGLSLISQVFYYQDVKCREEMYDK 690
Query: 769 DIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLH 828
DII+LQIGAS+++ N+FL+ VL ++ L + + ++ +++ I+Q +L+EE L
Sbjct: 691 DIIMLQIGASIMDPNKFLLLVLQRYELTDAF-----NKTISTKDQDLIKQYNTLIEEMLQ 745
Query: 829 LLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVIN 888
+LI I GERY+PG+G V ++ I +EI LCI+P+PHS + + LP++ N+ETGLE VIN
Sbjct: 746 VLIYIVGERYVPGVGNVTREEVIMREITHLLCIEPMPHSAIARNLPENENNETGLENVIN 805
Query: 889 EIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELECVP 948
++A FKKP SG GVYELK E +N++FYHYS+ + S++E Q+KRRK + E +P
Sbjct: 806 KVATFKKPG-VSGHGVYELKDESLKDFNMYFYHYSKTQHSKAEHMQKKRRKQENKDEALP 864
Query: 949 PPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHE 1008
PP P P FS V NLL CDVM++++ + ER++++ + ++E L H++ L E
Sbjct: 865 PPPPPEFCPAFSKVVNLLSCDVMMYILRTIFERAVDMESNLWTEGMLQMAFHILALGLLE 924
Query: 1009 ---------EESGNYQFFTFTDR-----AEKWNIEQHIEELCSSPRVEAHK 1045
EE + F+ R NI+ +E+L P++E+ K
Sbjct: 925 EKQQLQKAPEEEVAFDFYHKASRLGSSAMNAQNIQMLLEKLKGIPQLESQK 975
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1050 RKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTEL 1109
R P + N LI LP+DYS L+N S F CP S ++ ++P LCL CG +LCSQ+ CCQ E+
Sbjct: 1594 RYPRKRNSLIELPEDYSCLLNQASHFRCPRSADDERKHPVLCLFCGAILCSQNICCQ-EI 1652
Query: 1110 FFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRR 1169
VGAC +H+ CGAGV +FL++REC V+ + RGC PYLD+YGETD GL+R
Sbjct: 1653 VNGEEVGACVFHALHCGAGVCIFLKIRECRVVLVEGKARGCAYPAPYLDEYGETDPGLKR 1712
Query: 1170 GNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNL 1206
GNPL L +ERY+KL +W H I EEI+RS E + L
Sbjct: 1713 GNPLHLSRERYRKLHLVWQQHCIIEEIARSQETNQML 1749
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 37/55 (67%)
Query: 1282 FDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQW 1336
D+YGETD GL+RGNPL L +ERY+KL +W H I EEI+RS E + L W
Sbjct: 1700 LDEYGETDPGLKRGNPLHLSRERYRKLHLVWQQHCIIEEIARSQETNQMLFGFNW 1754
>sp|P91133|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1
PE=1 SV=2
Length = 2058
Score = 353 bits (906), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 221/639 (34%), Positives = 341/639 (53%), Gaps = 49/639 (7%)
Query: 422 LSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDH 481
+++E IL++D+Q+WKA R H++ + + M Y+ K FA+ F Y I +DFIKDDH
Sbjct: 442 FTMLENILLQDTQMWKAGRSILHQMLMRTVFMIYDQKVRFAKAFMLHYNEIYEDFIKDDH 501
Query: 482 DHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKL----NKKKKLEFE-- 535
+ S+ +SVQ TVP+LA L+A ED F ++S I + T K N K F+
Sbjct: 502 EMDVSVVGLSVQFMTVPSLARKLVA-EDQAFSVISKAIRDQTDKFVKYYNDGKIARFDFT 560
Query: 536 -RNIPNASFKRAQYILYDLRYLLGVPPDT--WTPELRKGFAHGLQFLLDLLSYMQGMDEV 592
R+ P +R+ +I D+ Y+L P W EL GF G L L ++QGMDEV
Sbjct: 561 SRSFP-PELRRSLHITRDMAYILNAVPSESDWNRELIDGFVQGFADFLLFLQHLQGMDEV 619
Query: 593 TRQVGQHMEYEPEWESAFNLHIKLAPVITLFLQWCGTDKE------ILIKAYRATMKTLC 646
RQ +H +E EWE+AFN+ ++L I++ + W T++E I+ M +
Sbjct: 620 KRQAVEHQVWESEWETAFNILLRLKDAISMIIGWAETNEEVHNRLMIMCLELMNRMPPVY 679
Query: 647 ADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSR 706
D +L + S H+DV S+H P+ R +AGL F+ S Y+
Sbjct: 680 TKSEEDTYEL--TVTINGESCRISHFDVLKSSTSVHQPVVRIIAGL------FSASNYTG 731
Query: 707 ELLS-DNCFFSRLTPEQLIEPV------------LRTQVMISQVHAGMWRRNGYSLLNQI 753
LL+ N + L E++ E + LR V+ +Q +A +WRRNG+SL+NQI
Sbjct: 732 FLLNRSNNSHTSLNQERIKELINCKDETNLYELSLRVLVLCAQSNATLWRRNGFSLINQI 791
Query: 754 YFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLK---- 809
+ Y + CRNEM D+D++++Q+GA+L S +F+ H+L++F L W FE +
Sbjct: 792 HNYFSPLCRNEMFDRDVLMMQVGAALTPSTKFIFHLLHRFRLFKWATSEFEQDKANEKPA 851
Query: 810 NPEEESIRQTISLV-EEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSE 868
PE E + +T+ ++ EEF+ LILI ERY G+G+ D +K+E+I LC S
Sbjct: 852 KPESEDLSKTLVMIAEEFIQCLILILCERYTYGVGKTRPMDQMKREVIHILCTGSHTFSH 911
Query: 869 LNKALPDDSNHET-GLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREEV 927
+ + + D N + L +N +ADF+KP ++ G + K Y+ FF HYS+ +
Sbjct: 912 IQQKMSHDINSKRLSLHEAVNLVADFRKPLATTA-GQFHCKESSLPTYSPFFMHYSKSDQ 970
Query: 928 SRSEEEQ-RKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLR 986
S +E+ Q R R K K + PP LP F + +L +V++HV+ L+++R+ R
Sbjct: 971 SAAEQSQARVRAKMEKSVRACAPPILPDFQTFFERIPEILTTNVLIHVVRLIIDRTAR-R 1029
Query: 987 ARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEK 1025
+R S+ HK L+LIG AL+EEE F FT RAE+
Sbjct: 1030 SRFSSDRLFHKTLYLIGIALNEEEKNPS--FGFTQRAEE 1066
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 101/148 (68%), Gaps = 3/148 (2%)
Query: 1051 KPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRN--PALCLICGDMLCSQSYCCQTE 1108
+P+ N L+ LP+ YS+LIN V+ F CP E+S + P LCL+CG +LCSQ+YCCQ +
Sbjct: 1894 QPVRPNLLVELPEKYSQLINQVATFKCPTIPIEESTSNVPTLCLVCGTILCSQAYCCQ-K 1952
Query: 1109 LFFKMSVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLR 1168
+ K S GAC YH C VGMFLRVR+C ++ + + RGCF PY+D++GE DQG R
Sbjct: 1953 IINKQSYGACRYHMSQCSGSVGMFLRVRDCSLVLMTTRKRGCFRPAPYVDEFGEVDQGFR 2012
Query: 1169 RGNPLRLCKERYKKLQRLWLSHGIHEEI 1196
RGNPL L E Y+KL+ LWL GI EE+
Sbjct: 2013 RGNPLHLNPELYQKLKSLWLQQGITEEV 2040
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 147/311 (47%), Gaps = 66/311 (21%)
Query: 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAW 177
+CG VFK GE TY C +C D TCV+C+ CF+ S H++HKYKM +S+ G CDCGD +AW
Sbjct: 94 ICGHVFKNGELTYTCLDCATDGTCVMCLQCFEVSIHKSHKYKMHSSSGSGYCDCGDADAW 153
Query: 178 KKEPYCDVHIIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKV 237
+ C H +K E ++L P+L +R +L+++ ++T DLK+
Sbjct: 154 TEGYACANH---EKKDDEEAAVLAPELKKRCEQLVEIILQFSLSMITHKD------DLKL 204
Query: 238 PPE-DVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQITYSH 296
P + ++ ++ + + TVLYNDE HT+E
Sbjct: 205 PEIFEKMKPEVTNEAQQYLTVLYNDETHTYE----------------------------- 235
Query: 297 NSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCED 356
VI L + C++ A+ T +DREGR+AVK + + C
Sbjct: 236 ------------------SVIKVLELYIHCTKDQAMLVATIVDREGRSAVKLGSKADCTK 277
Query: 357 LKSEIERFTSR---------HGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFR 407
K +++R T+R + N P+ V V+++ + A Q +++ LLTWL + R
Sbjct: 278 AKDDVQRKTARDPTSIRRSSNHNLPLSVKVMDTTLFALQNFSISLLTWLNTQMDVFPPLR 337
Query: 408 MLFSEVCLEEK 418
+ E+ L K
Sbjct: 338 EIVGEILLSSK 348
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 1283 DDYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTQWAH 1338
D++GE DQG RRGNPL L E Y+KL+ LWL GI EE+ E + W H
Sbjct: 2002 DEFGEVDQGFRRGNPLHLNPELYQKLKSLWLQQGITEEVVNYNEIDFRNVQYDWGH 2057
>sp|O60152|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ubr1 PE=3 SV=1
Length = 1958
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 156/644 (24%), Positives = 287/644 (44%), Gaps = 62/644 (9%)
Query: 432 DSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMS 491
D +LWK+ R L++ + + K+ Y + + F+ D + S+ S
Sbjct: 448 DLKLWKSLRYKLQELYLGYFITQPGFKEIMGARIAISYRRLAELFLLLDREPEHSVIFFS 507
Query: 492 VQIYTVPTLAHYLIAHEDVLFILLSTFISECT-RKLNKKKKLEFERNI--PNASF--KRA 546
+QI+TV +A L+ D L + +T + T +KLN ++ I +A+F +R
Sbjct: 508 MQIFTVADVAKLLVTEYDFLTTINATLYTFFTYKKLNTPNYVDQHAMIRTDSAAFHSRRY 567
Query: 547 QYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPE- 605
+I + ++++L +P E+ + L+ D + QGM TR V QH+E+E +
Sbjct: 568 IHIFHHIQFMLSIP---CVAEIVREDLKFLKQYADFFNLFQGMCPYTRAVSQHVEWENDS 624
Query: 606 WESAFNLHIKLAP----VITLFLQWCGTDKEI--------LIKAYRATMKTLCADEGIDL 653
W N+ +++A V +F++ T+K LI +A ++ E +
Sbjct: 625 WMYVLNVSLQVAKLCRHVGNVFME-LNTNKLANAINYLISLILYPKARNESWTNTESLTT 683
Query: 654 GQLGEVREVGDHSVACLHYDVSTQPVSIHLPLS---RFLAGLYIHLDKFNLSFYSRELLS 710
G V E G+ + + YD++ QPVS H PL +L Y+ D + L + +LL+
Sbjct: 684 GI--TVDERGNSKL--IEYDIALQPVSFHHPLHWLLVYLLSFYVERDNYKLLWTQLDLLA 739
Query: 711 DNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDI 770
+ + LR +SQ+ A +W RNG +L +Q + Y N+ D D+
Sbjct: 740 ------------VTDHPLRVCAWLSQMRAKLWIRNGTTLRDQAHHYRNLSFHEYTFDLDV 787
Query: 771 ILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLL 830
+LLQ+ + + + L +++F L + +Y F + + Q ++EEFL LL
Sbjct: 788 LLLQLTLTYGDPDAILPSFISRFQLEDQMYGRF----FVPHKHYDVSQVTIMMEEFLLLL 843
Query: 831 ILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEI 890
I I + + I+ I LC +PLP+SE+ K + E + ++
Sbjct: 844 ISIVCNTAVLDHWDITRR--IEYGIAHILCFRPLPYSEITKRTCEHLLEHKQFESTLKKV 901
Query: 891 ADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREEVSRSEEEQRKR--RKAAKELECVP 948
A F+ + G + LK E++D + F HYSR + +E R+R ++ +K LE V
Sbjct: 902 ATFRNAEGINDSGSFTLKDEYFDYVDPFNIHYSRNQREEAENILRRRYSKQHSKHLESVV 961
Query: 949 PPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHE 1008
+ P+L ++ +LQ D + ++ + + + + +L L+ ALH
Sbjct: 962 YEEYHPILHS-NITIPILQSDSFVGILWHTI---VYAYIYPYDQGKLEG---LVNTALHA 1014
Query: 1009 ------EESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEAHKV 1046
E G+ F+ ++ + + ++E C+SP V V
Sbjct: 1015 CLLVLMSEKGSEPIFSKKICENRFPVVEGLQEYCNSPDVTLFSV 1058
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 32/261 (12%)
Query: 952 LPPLLPPFSMVTNLLQCDVMLHV-MSLVLERSINLRARSFSEAQLHKILHLIGYALHEEE 1010
L LL FS++ L +C ++ + + E NL ++ ++L +H+ G E
Sbjct: 1712 LYKLLERFSLIF-LRKCALLWYCRYGVSFETQPNLNFQNSELSRLQTKMHIPGVI----E 1766
Query: 1011 SGNYQFFTFTDRAEKWNIEQH-------IEELCSSPRVEAHKVPQDRKPLEINRLINLPD 1063
N+ T + +W++ +H LC PR + + L++LP
Sbjct: 1767 LSNH--LCLTASSTEWSLIKHWCNFFTETGPLCDFPRAYYPGIYE---------LVSLPY 1815
Query: 1064 DYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSH 1123
+ ++ + C E PA+CL CG +LC QS+CC +G C H
Sbjct: 1816 ELDKVFELLLARRCSKCLTE-PMEPAICLFCGKLLCFQSHCCSFN-----GIGECNLHMQ 1869
Query: 1124 FCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKL 1183
C + +G+FL V++C +L+L +P G F P+LD YGETD GLRRG L ++RY +
Sbjct: 1870 QCASDIGIFLIVKKCAILYL-NPPVGSFSVAPFLDAYGETDLGLRRGRSQYLSQKRYDET 1928
Query: 1184 QR-LWLSHGIHEEISRSIEAS 1203
R +WL+ I I+R ++A+
Sbjct: 1929 VRTMWLNGSIPSYIARQLDAN 1949
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 32/175 (18%)
Query: 117 SVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTS-NAGGCCDCGDVE 175
S CG +F+ GE Y C+ C +D+ LCV CF+ ++H++H+ S +GGCCDCG+
Sbjct: 94 SKCGHIFRKGEVFYRCKTCSVDSNSALCVKCFRATSHKDHETSFTVSAGSGGCCDCGNAA 153
Query: 176 AWKKEPYCDVHIIGTQKRHESGSI-------LPPDLAQRARLTFSSVLRYAYQLLTTDYG 228
AW + C +H E +I +P L + T VL + + +
Sbjct: 154 AWIGDVSCKIH-----SHEEDATISNDMIDEIPEKLENSIQTTIDCVLDFVLDVFSCS-- 206
Query: 229 PSIPLDLKVPP--EDVLQ----ITYSHNS----DNFCT----VLYNDEFHTFEQL 269
P +LK P E +LQ S N D+ C VL+NDE H+F+Q
Sbjct: 207 ---PENLKKMPTLESILQDEKTSRLSENKYGDIDDSCNMYSLVLWNDEKHSFKQF 258
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1282 FDDYGETDQGLRRGNPLRLCKERYKKLQR-LWLSHGIHEEISRSIEAS 1328
D YGETD GLRRG L ++RY + R +WL+ I I+R ++A+
Sbjct: 1902 LDAYGETDLGLRRGRSQYLSQKRYDETVRTMWLNGSIPSYIARQLDAN 1949
>sp|O13731|UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubr11 PE=3 SV=1
Length = 2052
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 142/611 (23%), Positives = 258/611 (42%), Gaps = 68/611 (11%)
Query: 368 HGNRPIKVAVVNSVVIAHQIYAMRLLTWLQKVLGYSESFR-MLFSEVCLEE---KAP--- 420
H PI VV + +LL L++++ R +V L E K+P
Sbjct: 519 HTPVPIPTTATQDVVTIRPEFNSQLLNNLRQIINARRRPRPAAVCQVSLREDYWKSPHPI 578
Query: 421 ---DLSIVEG---------ILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKK 468
S VE L+ D + WK R +L++ K+ F
Sbjct: 579 PPSSYSFVESPSSILRLDYFLLFDLKFWKRLRGLLSKLYVVPFNRNLLFKRLMGIRFVIH 638
Query: 469 YGSIMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRK--- 525
Y S+ F+ D + S+ +SVQ +T P+LA ++ D L L +T +S T+
Sbjct: 639 YRSLATAFLFADREPDHSVMFLSVQFFTTPSLAEAVVKDYDFLTNLNATTLSLLTQSNRP 698
Query: 526 -------LNKKKKLEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQF 578
+ ++ R + +R + DL YLL P+++K ++
Sbjct: 699 STLFSSDIEYTPTIQLNRQVLKT--RRTYNLFSDLGYLLQ------HPQVKKLVVDDTRY 750
Query: 579 L---LDLLSYMQGMDEVTRQVGQHMEYE-PEWESAFNLHIKLAPVITLFLQWCGTDK--E 632
+ +DLL QG+ R + H++++ P ++ + ++A +++ + C T E
Sbjct: 751 VHQYIDLLRVFQGVIPQQRAILSHVQWDFPHGKNILFVMQRVA-MLSNTVSSCFTQAPYE 809
Query: 633 ILIKAYRATMKTLCADEGIDLGQLGE------VREVGDHSVACLHYDVSTQPVSIHLPLS 686
L A + + ++ +D+ + E + + + + + VS P+S + PL
Sbjct: 810 RLFYAIKCIITSI-THPKLDIAESLEPLSCIPSSSLTNFTQPLVPFSVSRDPISFYHPLH 868
Query: 687 RFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNG 746
L+ L+ + S + ++ L L++ LR V+++Q+ +W RNG
Sbjct: 869 WMLSNLFSYCRVDASSHWDKDTLL-----------ALLDHPLRVCVLLAQIDCNLWIRNG 917
Query: 747 YSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIHVLNKFNLINWVYVNFESN 806
S+L FY + DKDI+ +Q ++ N L V+ +F +W+Y N N
Sbjct: 918 RSILLTDAFYRQLNNIEVSYDKDILAIQTILMFVDPNLVLNAVVQRFEFTDWLY-NLTYN 976
Query: 807 SLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPH 866
N + E I +++ + L LLI + ER I V D I+ + QQLC PL +
Sbjct: 977 EHPNYDTERIP---AMLCKMLELLIALITER--EQILHVDIQDIIRTRLAQQLCFGPLAY 1031
Query: 867 SELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREE 926
S L + + +++ E+ +K P GVY LK E+YD + +++HY++ E
Sbjct: 1032 SALLSTISSNLVESLSFDKIREEVTSYKAPDGLHDFGVYSLKDEYYDLVDPYYFHYNKNE 1091
Query: 927 VSRSEEEQRKR 937
S+ +KR
Sbjct: 1092 REESDTILKKR 1102
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 41/256 (16%)
Query: 101 SPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKM 160
S E Q++ + VCG VF+ GE Y C+ CG+D TCVLC CF + H H+ +
Sbjct: 80 SEPECAQELQDKRSGSKVCGHVFRAGEVIYRCKNCGLDNTCVLCAPCFHATNHEGHETHV 139
Query: 161 GTSNA-GGCCDCGDVEAWKKEPYCDVH-IIGTQKRHESGSILPPDLAQRARLTFSSVLRY 218
S + G CDCGD EAW + C +H + +++ + ++P +L R T +L +
Sbjct: 140 SISTSYSGICDCGDPEAWNVDLNCKIHNVPDDEEQKKPEEVIPLELQHSIRTTIHILLDF 199
Query: 219 AYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSI 278
+ + P++LK ++L ++E +L + YG
Sbjct: 200 ILDVFSCS-----PVNLKA-------------QSTVGSILADEE---ASRLSSAKYG--- 235
Query: 279 PLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKD-AIEFVTN 337
+ P +V ++ +L+NDE HTF+ V+ +++ +L S +E
Sbjct: 236 ---VADRPCNVFRV-----------MLWNDEVHTFDAVVGSVLEALDSSNTAFGLEVAQR 281
Query: 338 IDREGRAAVKCSNFSH 353
+D GR AV S H
Sbjct: 282 VDSIGRFAVATSASVH 297
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Query: 1055 INRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMS 1114
I L+ LP LI+++ C + PA+C++CG ++C + Q + +
Sbjct: 1897 IYELVKLPHRLENLIDSMQESVCCMCHKTPIL-PAICMLCGSVICFNAR--QNTVSSRRL 1953
Query: 1115 VGACTYHSHFCGAGVGMFLRVRECEVLFLAS-PNRGCFMSPPYLDDYGETDQGLRRGNPL 1173
G C H+ C VG+F + C +L L S N G M PYLD +GETD LRRG P
Sbjct: 1954 TGECNKHAATCTGSVGIFFITKACGILLLDSISNTGTIMPTPYLDIHGETDLQLRRGCPQ 2013
Query: 1174 RLCKERYKKLQR-LWLSHGIHEEISRSIEAS 1203
L ++RY + R WL + ++++R ++ +
Sbjct: 2014 FLNQKRYDFVVREQWLRQTVLQKMARHMDMT 2044
>sp|O60014|UBR1_KLULA E3 ubiquitin-protein ligase UBR1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=UBR1 PE=3 SV=2
Length = 1945
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 237/1014 (23%), Positives = 384/1014 (37%), Gaps = 172/1014 (16%)
Query: 110 SQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKY--KMGTSNAGG 167
S+ ++ +CG F++GEP Y C+EC D TCVLCV+CF H H + T G
Sbjct: 102 SKFNHAGRICGAKFRVGEPIYRCKECSFDDTCVLCVNCFNPKDHVGHHVYTSICTEFNNG 161
Query: 168 CCDCGDVEAWKKEPYC-------------DVHIIGTQKRHESGSILPPDLAQRARLTFSS 214
CDCGD EAW E C D H K ES I D F
Sbjct: 162 ICDCGDKEAWNHELNCKGAEDNGRLEDEFDDHDGKISKMLESVLIELFD-------HFID 214
Query: 215 VLRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDY 274
V + LTT P I L+ ++ Y+ +D + Y +++ E+ +
Sbjct: 215 VFNQNIEPLTTIQKPLIA-KLRYFIQNG---KYNEQADMLRRLAYRNQYMDEEE--SQQQ 268
Query: 275 GPSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEF 334
PS LD P L+ ++ ++YNDEFH + Q + +R K
Sbjct: 269 TPSTSLD----PLSTLK--------DYAILVYNDEFHNYSQA-SAAIRQGGPDNKHIDLL 315
Query: 335 VTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLT 394
ID EGR+ ++CS D+ S + F S N + + HQ +
Sbjct: 316 TAKIDSEGRSLLRCS-----ADIASLMGGFFSVQSN-GLSCTITQWYEYLHQEACKYSIM 369
Query: 395 WLQKVLGYSES-----FRMLFSEVCLEEKAP-----DLSIVEGILVKDSQLWKAARLHW- 443
W+ L S FR +V + P D++ V DS L L+
Sbjct: 370 WINDCLNIPNSTFQSLFRNAIGKVLCSKYEPFYQSIDMTSVVRDYFSDSYLSDDPYLYAD 429
Query: 444 HRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIGSMS------------ 491
H + G+ + KS I+ I +DH H ++ +
Sbjct: 430 HSVLGEGVKIPLGRHKSLDPGDISAISPILNKVIAEDH-HEYTNSRLQYVLFLENRYWKK 488
Query: 492 ----VQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQ 547
VQ +PTLA + H+ + L TR + F P + R
Sbjct: 489 LRKIVQDLIIPTLASSAV-HKPMFTDQLVEIFPHMTRSVT------FMDREPQLTSLRES 541
Query: 548 YILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWE 607
+ L P ++ F + + ++D+ MDE T + P
Sbjct: 542 VV-----QLFTCPTTAYSIFHSGHFNYVIWSVIDVFVDFSTMDEGTLVWQRVQRSNPSKS 596
Query: 608 SAFNLHIKLAPVITLFLQWCGTDKEILIKAYRATM-KTLC----ADEGIDLGQLGEVREV 662
+ + L V TL + TD +L+K M TLC I + V
Sbjct: 597 YSISFKQGLYAVETLLSKI--TDPNLLLKPGEFIMIVTLCKLFNGAWKIKRKEGEHVLRE 654
Query: 663 GDHSVACLHYDVST-----------QPVSIHLPLSRFLAGLYIHLDKF----NLSF---- 703
H + L Y S Q H+ R L G LD F NLS+
Sbjct: 655 DQHFIPYLEYTTSVYSIIQTFDKVLQQSKDHID-QRLLIGAINLLDSFLGHRNLSYKLYK 713
Query: 704 --------YSRELLS----DNCFFSRL---TPEQLIEPVL--------------RTQVMI 734
S+E +S + FS L P Q+ VL R+ V+
Sbjct: 714 DFEIIKFQISKERVSFMNPVHTLFSFLVQHVPLQVSIQVLSQSKDYLVISDFALRSVVLC 773
Query: 735 SQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNEF---LIHVLN 791
SQ+ G W RNG S+L+Q +Y N +DI L Q+ A LIE N+F + ++L+
Sbjct: 774 SQIDIGFWVRNGMSVLHQSAYYKN-NPEMSSYSRDIQLNQL-AFLIEKNDFQRVIYNMLD 831
Query: 792 KFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLILITGER-YMPGIGRVASDDC 850
++ L++W S+ + E + S++++F+ L I ER + +
Sbjct: 832 RWELLDWF-----DGSVPSTETVYDDKISSIIQQFVAFLYQILVERDFYKKFDTLEETQL 886
Query: 851 --IKKEIIQQLCIKPLPHSELNKALPDD-SNHETGLERVINEIADFKKPTQSSGKGVYEL 907
IK II +L +PL +++L +PD + + + V+ E++ + +P GV++L
Sbjct: 887 YNIKNAIIYKLYAEPLSYTDLLNDIPDYLTESVSQFDTVLEEVSTYIEPKGLEDNGVFKL 946
Query: 908 KPEFYDGYNVF--------FYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPF 959
K E Y + F H + S + + KR K + + + +L P
Sbjct: 947 KKELYKRIDSLRLLNMGNDFEHSATIVKSHLADSKEKRAKIIVKPQLLELDELDPCAREL 1006
Query: 960 SMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLIGYALHEEESGN 1013
T + ++ ++ +L+ +++ + SF+ +++LHLI ++E N
Sbjct: 1007 GSFT---RTNLFAKLIFKLLKLAVSDSSFSFT----YELLHLIHAIFRDDEMVN 1053
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 33/163 (20%)
Query: 1058 LINLPDDYSELINTVSLFTCPNSDREDSRNPAL-------------------CLICGDML 1098
L+N P +Y +I L T N+ +++N L CLICG +
Sbjct: 1615 LVNAPHEYCSIIKLTDLATHLNTYVTNNKNITLREENDQKIRNTVNRLDYKICLICGVKI 1674
Query: 1099 CSQSYCCQTELFFKMSVGACTYHSHFCGAGV-GMFLRVRECEV-LFLASPNRGCFMSPPY 1156
+++ + + H C G G+FL +V L+L+ P+ +S PY
Sbjct: 1675 HARTDGLEMQ-----------KHMERCSHGSSGLFLIPNISQVCLYLSRPDCTVNISAPY 1723
Query: 1157 LDDYGETDQ-GLRRGNPLRLCKERYKKLQRLWLSHGIHEEISR 1198
L+ +GE+ + + RG+ L RY+ L RLW+S+GI ISR
Sbjct: 1724 LNSHGESGRNAIERGDLTVLNHARYEHLTRLWISNGIPGYISR 1766
>sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2
Length = 1888
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 146/614 (23%), Positives = 258/614 (42%), Gaps = 109/614 (17%)
Query: 447 FISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFS--IGSMSVQIYTVPTLAHYL 504
F+ ML + E K +F + F + Y IMK K + S I +SVQ+++ LA +
Sbjct: 401 FLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNRIVHISVQLFSNEELARQV 460
Query: 505 IAH---EDVLFILLSTFISECTRK---LNKKKKLEFERNIPNASFKRAQY--ILYDLRYL 556
D++ +L + C K +++ L N A K Y ++ D +
Sbjct: 461 TEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVVVNCGEALLKNNTYWPLVSDFINI 520
Query: 557 LGVPPDTWTPELRKGFA--HGLQFL-LDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLH 613
L + K F HGL ++ +S+ QGM+ R++ +H+E+E + A
Sbjct: 521 LS------HQSVAKRFLEDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQTYYA---- 570
Query: 614 IKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHY- 672
A+ A ++ CA L +VRE +++ + Y
Sbjct: 571 -----------------------AFAAELEA-CAQPMWGLLSHCKVRETQEYTRNVVRYC 606
Query: 673 ---------------DVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSR 717
+ + V+ HLPL R+ A F S+ +
Sbjct: 607 LEALQDWFDAINFVDEPAPNQVTFHLPLHRYYA-----------MFLSKAVKCQELDLDS 655
Query: 718 LTPEQ------LIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDII 771
+ P+Q +I P L+ Q ++++H+ MW RNG + Q Y N M+D DI
Sbjct: 656 VLPDQEMLMKLMIHP-LQIQASLAEIHSNMWVRNGLQIKGQAMTYVQSHFCNSMIDPDIY 714
Query: 772 LLQIGASLIESNEFLIHVLNKFNLINWVYVNFE-SNSLKNPEEESIRQTISLVEEFLHLL 830
LLQ+ AS ++ + F+ V +F +++ + + + N++ + E E S++E L L
Sbjct: 715 LLQVCASRLDPDYFISSVFERFKVVDLLTMASQHQNTVLDAEHER-----SMLEGALTFL 769
Query: 831 ILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGL------- 883
+++ R G+ + D+ ++ E++ QLC+ HS L +P++ N ++G+
Sbjct: 770 VILLSLRLHLGM---SDDEILRAEMVAQLCMNDRTHSSLLDLIPENPNPKSGIIPGSYSF 826
Query: 884 ERVINEIADFKKPTQSSG----KGVYELKPEF----YDGYNVFFYHYSREEVSRSEEEQR 935
E V++ +ADFK P G +G+Y K E +D V R +V + +
Sbjct: 827 ESVLSAVADFKAPVFEPGGSMQQGMYTPKAEVWDQEFDPVMVILRTVYRRDVQSAMDRYT 886
Query: 936 KRRKAAKELECVP-PP--KLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSE 992
K + + P PP K L P + + LL C LH++ L I + ++ SE
Sbjct: 887 AFLKQSGKFPGNPWPPYKKRTSLHPSYKGLMRLLHCKT-LHIVLFTLLYKILMDHQNLSE 945
Query: 993 AQLHKILHLIGYAL 1006
L +L+LI L
Sbjct: 946 HVLCMVLYLIELGL 959
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 1054 EINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKM 1113
++ L+ LP++Y+ + TC + ++PA+CL+CG +C + CC+ +
Sbjct: 1743 KLPHLLQLPENYNTIFQYYHRKTCSVCTKV-PKDPAVCLVCGTFVCLKGLCCKQQ----- 1796
Query: 1114 SVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPL 1173
S C HS CGAG G+FL + V+ + +R C YLD +GE D+ LRRG PL
Sbjct: 1797 SYCECVLHSQNCGAGTGIFLLIN-ASVIIIIRGHRFCLWGSVYLDAHGEEDRDLRRGKPL 1855
Query: 1174 RLCKERYKKLQRLWLSH 1190
+CKERYK L++ W+SH
Sbjct: 1856 YICKERYKVLEQQWISH 1872
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 114 NPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGD 173
+P ++CG V+ Y CR CG+ LC +CF + H H + M S AGG CDCGD
Sbjct: 115 DPAALCGLVWTANFVAYRCRTCGISPCMSLCAECFHQGDHTGHDFNMFRSQAGGACDCGD 174
Query: 174 VEAWKKEPYCDVHIIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDY------ 227
++ +C H I K + +P DL + + Q L Y
Sbjct: 175 SNVMRESGFCKRHQI---KSSSNIPCVPKDLLMMSEFVLPRFIFCLIQYLREGYNEPAAD 231
Query: 228 GPS 230
GPS
Sbjct: 232 GPS 234
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1280 IKFDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSH 1315
+ D +GE D+ LRRG PL +CKERYK L++ W+SH
Sbjct: 1837 VYLDAHGEEDRDLRRGKPLYICKERYKVLEQQWISH 1872
>sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3
Length = 1889
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 146/612 (23%), Positives = 256/612 (41%), Gaps = 105/612 (17%)
Query: 447 FISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFS--IGSMSVQIYTVPTLAHYL 504
F+ ML + E K +F + F + Y IMK K + S I +SVQ+++ LA +
Sbjct: 401 FLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNRIVHISVQLFSNEELARQV 460
Query: 505 IAH---EDVLFILLSTFISECTRK---LNKKKKLEFERNIPNASFKRAQY--ILYDLRYL 556
D++ +L + C K +++ L N A K Y ++ D +
Sbjct: 461 TEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVVVNCGEALLKNNTYWPLVSDFINI 520
Query: 557 LGVPPDTWTPELRKGFAHGLQFL-LDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIK 615
L + R HGL ++ +S+ QGM+ R++ +H+E+E + A
Sbjct: 521 LS----HQSVAQRFLEDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQTYYA------ 570
Query: 616 LAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHY--- 672
A+ A ++ CA L +VRE +++ + Y
Sbjct: 571 ---------------------AFAAELEA-CAQPMWGLLSHCKVRETQEYTRNVVRYCLE 608
Query: 673 -------------DVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLT 719
+ + V+ HLPL R+ A F S+ + L
Sbjct: 609 ALQDWFDAINFVDEPAPNQVTFHLPLHRYYA-----------MFLSKAVKCQELDLDSLL 657
Query: 720 PEQ------LIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILL 773
P+Q +I P L+ Q ++++H+ MW RNG + Q Y N M+D DI LL
Sbjct: 658 PDQEMLMKLMIHP-LQIQASLAEIHSNMWVRNGLQIKGQAMTYVQSHFCNSMIDPDIYLL 716
Query: 774 QIGASLIESNEFLIHVLNKFNLINWVYVNFE-SNSLKNPEEESIRQTISLVEEFLHLLIL 832
Q+ AS ++ + F+ V +F +++ + + + N + + E E S++E L L++
Sbjct: 717 QVCASRLDPDYFISSVFERFKVVDLLTMASQHHNMVLDVEHER-----SMLEGALTFLVI 771
Query: 833 ITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGL-------ER 885
+ R G+ + DD ++ E++ QLC+ HS L +P++ N ++G+ E
Sbjct: 772 LLSLRLHLGM---SDDDILRAEMVAQLCMNDRTHSSLLDLIPENPNPKSGIIPGSYSFES 828
Query: 886 VINEIADFKKPTQSSG----KGVYELKPEF----YDGYNVFFYHYSREEVSRSEEEQRKR 937
V++ +ADF+ P G +G+Y K E +D V R +V + +
Sbjct: 829 VLSAVADFRAPIFEPGGSMQQGMYTPKAEVWDQEFDPVMVILRTVYRRDVQSAMDRYTAF 888
Query: 938 RKAAKELECVP-PP--KLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQ 994
K + + P PP K L P + + LL C LH++ L I + ++ SE
Sbjct: 889 LKQSGKFPGNPWPPYKKRTSLHPSYKGLMRLLHCKT-LHIVLFTLLYKILMDHQNLSEHV 947
Query: 995 LHKILHLIGYAL 1006
L +L+LI L
Sbjct: 948 LCMVLYLIELGL 959
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 1054 EINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKM 1113
++ L+ LP++Y+ + TC + ++PA+CL+CG +C + CC+ +
Sbjct: 1744 KLPHLLQLPENYNTIFQYYHRKTCSVCTKV-PKDPAVCLVCGTFVCLKGLCCKQQ----- 1797
Query: 1114 SVGACTYHSHFCGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPL 1173
S C HS CGAG G+FL + V+ + +R C YLD +GE D+ LRRG PL
Sbjct: 1798 SYCECVLHSQNCGAGTGIFLLIN-ASVIIIIRGHRFCLWGSVYLDAHGEEDRDLRRGKPL 1856
Query: 1174 RLCKERYKKLQRLWLSH 1190
+C+ERY+ L++ W+SH
Sbjct: 1857 YICEERYRVLEQQWVSH 1873
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 91 DSLEEFIC----DGSPEEIFQKVSQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVD 146
D+LE C G EE V D P ++CG V+ Y CR CG+ LC +
Sbjct: 89 DALEWCKCLLAGGGGYEEFCAAVRAYD-PAALCGLVWTANFVAYRCRTCGISPCMSLCAE 147
Query: 147 CFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHIIGTQKRHESGSILPPDLAQ 206
CF + H H + M S AGG CDCGD ++ +C H I K + +P DL
Sbjct: 148 CFHQGDHTGHDFNMFRSQAGGACDCGDSNVMRESGFCRRHQI---KSSSNIPCVPKDLLM 204
Query: 207 RARLTFSSVLRYAYQLLTTDY 227
+ + Q L Y
Sbjct: 205 MSEFVLPRFIFCLIQYLREGY 225
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 1280 IKFDDYGETDQGLRRGNPLRLCKERYKKLQRLWLSH 1315
+ D +GE D+ LRRG PL +C+ERY+ L++ W+SH
Sbjct: 1838 VYLDAHGEEDRDLRRGKPLYICEERYRVLEQQWVSH 1873
>sp|P19812|UBR1_YEAST E3 ubiquitin-protein ligase UBR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBR1 PE=1 SV=1
Length = 1950
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 133/331 (40%), Gaps = 61/331 (18%)
Query: 119 CGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKY--KMGTSNAGGCCDCGDVEA 176
CGR FK+GEP Y C ECG D TCVLC+ CF H NH + T G CDCGD EA
Sbjct: 123 CGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEA 182
Query: 177 WKKEPYCDVHIIGTQKRHESGSILPPDLAQRA-----------------RLTFSSVLRYA 219
W +C K E + + D A A L + V Y
Sbjct: 183 WNSPLHC--------KAEEQENDISEDPATNADIKEEDVWNDSVNIALVELVLAEVFDYF 234
Query: 220 YQLLTTDYG--PSIPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPS 277
+ + P+I D+ + ++ Q + F L + + F+ T PS
Sbjct: 235 IDVFNQNIEPLPTIQKDITIKLREMTQQGKMYERAQFLNDLKYENDYMFDGTTTAKTSPS 294
Query: 278 -----IPLDLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAI 332
P K+ PE N+ ++YNDE+H + Q L + + I
Sbjct: 295 NSPEASPSLAKIDPE------------NYTVIIYNDEYHNYSQATTALRQGV--PDNVHI 340
Query: 333 EFVTN-IDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMR 391
+ +T+ ID EGRA +KCS +DL S + F + N + + + HQ
Sbjct: 341 DLLTSRIDGEGRAMLKCS-----QDLSSVLGGFFAVQTN-GLSATLTSWSEYLHQETCKY 394
Query: 392 LLTWLQKVLG-----YSESFR-MLFSEVCLE 416
++ W+ L + +FR M+ +C E
Sbjct: 395 IILWITHCLNIPNSSFQTTFRNMMGKTLCSE 425
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/517 (22%), Positives = 224/517 (43%), Gaps = 68/517 (13%)
Query: 425 VEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHS 484
++ IL D++ WK R + I + K F + + + I + D +
Sbjct: 503 LQHILYFDNRYWKRLRKDIQNVIIPTLASSNLYKPIFCQQVVEIFNHITRSVAYMDREPQ 562
Query: 485 FS-IGSMSVQIYTVPTLAHYLIAHE---DVLFILLSTFISECTRK-----LNKKKKLEFE 535
+ I VQ++T PT A + ++ D+++ ++ F C + + +K
Sbjct: 563 LTAIRECVVQLFTCPTNAKNIFENQSFLDIVWSIIDIFKEFCKVEGGVLIWQRVQKSNLT 622
Query: 536 RNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQ 595
++ + SFK+ LY + LL D P K LL L G ++ R+
Sbjct: 623 KSY-SISFKQG---LYTVETLLSKVHDPNIPLRPKEIIS----LLTLCKLFNGAWKIKRK 674
Query: 596 VGQHMEYEPEWESAFNLHIKLAPVITLFLQWC---------GTDKEILIKAYRATMKTLC 646
G+H+ +E + F +++ I +Q D ++ + A R + +
Sbjct: 675 EGEHVLHE---DQNFISYLEYTTSIYSIIQTAEKVSEKSKDSIDSKLFLNAIR-IISSFL 730
Query: 647 ADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSR 706
+ + + + EV + + VS + V+ PL L+ L ++K +L +
Sbjct: 731 GNRSLTYKLIYDSHEV-------IKFSVSHERVAFMNPLQTMLSFL---IEKVSLK-DAY 779
Query: 707 ELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEML 766
E L D F +++ + LR+ V+ SQ+ G W RNG S+L+Q +Y N N L
Sbjct: 780 EALEDCSDFLKIS-----DFSLRSVVLCSQIDVGFWVRNGMSVLHQASYYKN----NPEL 830
Query: 767 ---DKDIILLQIGASLIESNE---FLIHVLNKFNLINWVY--VNFESNSLKNPEEESIRQ 818
+DI L Q+ A L E ++ + ++L+++ L++W V+++ ++ I+Q
Sbjct: 831 GSYSRDIHLNQL-AILWERDDIPRIIYNILDRWELLDWFTGEVDYQHTVYEDKISFIIQQ 889
Query: 819 TISLVEEFLHLLILITGERYMPGIGRVASD--DCIKKEIIQQLCIKPLPHSELNKALPDD 876
I+ + + L T +Y + D IK II L +KPL +S+L +++PD
Sbjct: 890 FIAFIYQIL------TERQYFKTFSSLKDRRMDQIKNSIIYNLYMKPLSYSKLLRSVPDY 943
Query: 877 SNHETG-LERVINEIADFKKPTQSSGKGVYELKPEFY 912
+T + + E++ F +P + GV++LK Y
Sbjct: 944 LTEDTTEFDEALEEVSVFVEPKGLADNGVFKLKASLY 980
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 1125 CGAGVGMFLRVRECEV-LFLASPNRGCFMSPPYLDDYGETDQ-GLRRGNPLRLCKERYKK 1182
C G FL EV L L P F+S PYL+ +GE + +RRG+ L +RY+
Sbjct: 1727 CFKPFGAFLMPNSSEVCLHLTQPPSNIFISAPYLNSHGEVGRNAMRRGDLTTLNLKRYEH 1786
Query: 1183 LQRLWLSHGIHEEISR 1198
L RLW+++ I ISR
Sbjct: 1787 LNRLWINNEIPGYISR 1802
>sp|Q07963|UBR2_YEAST E3 ubiquitin-protein ligase UBR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBR2 PE=1 SV=1
Length = 1872
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 123/284 (43%), Gaps = 14/284 (4%)
Query: 725 EPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIESNE 784
E L T V+I Q++ G W RNG + +Q Y R DI +Q ++ +E
Sbjct: 802 ESALSTLVLIGQINVGFWVRNGTPITHQARMYTKYSMREFTYISDIFNVQFSMAMCNPDE 861
Query: 785 FLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLI-LITGERYMP-GI 842
++ L+++ L +W +N + + T+++V E + LLI L+T R +
Sbjct: 862 LMVTYLSRWGLKHW------ANGVPMYDYPDTETTVAVVNECILLLIQLLTEVRSLVMKS 915
Query: 843 GRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGK 902
+ + K EII LC ++++ +P+ + + + A++ P +
Sbjct: 916 SKEGFERTFKSEIIHALCFDTCSYAQIVNCIPEHITKHPSFDIYLEKYANYTSPVSLTDN 975
Query: 903 GVYELKPEFYDGYNVFFYHYSREEVSRSEEEQR----KRRKAAKELECVPPPKLPPLLPP 958
G++ LK ++ D + ++ S E+ R +K E VP K+ LL
Sbjct: 976 GIFVLKEKYKDEIDPYYIGLSSSRRYDVEKNIRLNMANLKKMKYEDTFVPAKKVKDLLKN 1035
Query: 959 FSMVTNLLQCDVMLHVMSLVLERSINLRARSFSEAQLHKILHLI 1002
++ + L ++ L L+ +++ + + L +++HLI
Sbjct: 1036 -TLFSGLYSIS-SVNTFGLFLKNTLDHIIKYDYDNLLPRVVHLI 1077
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 25/210 (11%)
Query: 978 VLERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKWNIEQHIEELCS 1037
V +R I L R F +L + H + + E + N + + D + I+Q I ++
Sbjct: 1654 VKQREIELIFRYF---KLPNLTHFLKDFFYNELTQNIE--RYNDGNDNLRIQQVIYDMVQ 1708
Query: 1038 SPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDM 1097
+ A+ P+ + LI LP + S+ SL S++ D A+CL+CG
Sbjct: 1709 NINTRAYPSPEHIQ------LIELPLNLSKF----SLDNDEISNKCDKYEIAVCLLCGQK 1758
Query: 1098 L-CSQSYCCQTELFFKMSVGACTYH-SHFC--GAGVGMFLRVRECEVLFLASPNRGCFMS 1153
+S Q L G CT H + C + G+FL + ++L+ RG F +
Sbjct: 1759 CHIQKSIALQGYL-----QGECTDHMRNGCEITSAYGVFL-MTGTNAIYLSYGKRGTFYA 1812
Query: 1154 PPYLDDYGETDQGLRRGNPLRLCKERYKKL 1183
PYL YGET++ + G P+ L + RY L
Sbjct: 1813 APYLSKYGETNEDYKFGTPVYLNRARYANL 1842
Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 117 SVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKY--KMGTSNAGGCCDCGDV 174
+ C R+ E Y C C + +C CF K H NH Y K+ G C CGD
Sbjct: 96 TACTRLCFPSETIYYCFTCSTNPLYEICELCFDKEKHVNHSYVAKVVMRPEGRICHCGDP 155
Query: 175 EAW 177
A+
Sbjct: 156 FAF 158
>sp|A1AXS4|DCUP_RUTMC Uroporphyrinogen decarboxylase OS=Ruthia magnifica subsp.
Calyptogena magnifica GN=hemE PE=3 SV=1
Length = 347
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 35 TNVVNDWKQKFQQGTLSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQN------I 88
T +VN K+KF T+ IT F + +W+ + + LDW+ + N Q
Sbjct: 224 TKIVNGIKRKFNGKTIPITLFTKGGAMWLEQIANSGCDGVALDWTVELNDAQQRIGAKVA 283
Query: 89 LFDSLEEFICDGSPEEIFQKVSQ-MDNPPSVCGRVFKMG 126
L +L+ + SPE+I ++V + + G VF +G
Sbjct: 284 LQGNLDPCVLYASPEKIREEVKKILSQFQGDTGHVFNLG 322
>sp|Q0TLJ8|PANB_ECOL5 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) GN=panB PE=3 SV=1
Length = 264
Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 19/132 (14%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C DK+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTVQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIE---PVLRT 730
ST PV++ A + H + LL+D F + TPEQ E V+R
Sbjct: 55 DSTLPVTV--------ADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRA 106
Query: 731 QVMISQVHAGMW 742
+ ++ G W
Sbjct: 107 GANMVKIEGGEW 118
>sp|B7MNZ6|PANB_ECO81 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Escherichia
coli O81 (strain ED1a) GN=panB PE=3 SV=1
Length = 264
Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 19/132 (14%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C DK+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTVQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIE---PVLRT 730
ST PV++ A + H + LL+D F + TPEQ E V+R
Sbjct: 55 DSTLPVTV--------ADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRA 106
Query: 731 QVMISQVHAGMW 742
+ ++ G W
Sbjct: 107 GANMVKIEGGEW 118
>sp|A8ALE9|PANB_CITK8 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=panB PE=3 SV=1
Length = 263
Score = 37.0 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTIALLQKCKQEKKRFATITAYDYSFARLFADEGIN------VMLVGDSLGMTVQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAF 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAVVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|Q5NNT4|GLMM_ZYMMO Phosphoglucosamine mutase OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=glmM PE=3 SV=1
Length = 445
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 727 VLRTQV----MISQVHAGMWRRNGYSLLNQIYFYHNVKCRNEMLDKDIILLQIGASLIES 782
+LRTQV ++ + AG + G + I YH D + LQ+ A L++S
Sbjct: 302 LLRTQVGDRHVVEAMRAGGYTVGGEQSGHIILSYHTTTG-----DGLVAALQVLADLVQS 356
Query: 783 NEFLIHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFL----HLLILITGERY 838
++ +L+ F+ + N +S + E+ES+ + IS EE L LLI +G
Sbjct: 357 DKKASELLHVFDPFPQLLKNVRYSSGQPLEDESVCEAISEAEESLKGKGRLLIRKSGTEP 416
Query: 839 MPGIGRVASDDCIKKEIIQQLC 860
+ + A D + +I+ +C
Sbjct: 417 LIRVMAEAEDPDLVHQIVDHIC 438
>sp|Q8ZRR0|PANB_SALTY 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B5BL65|PANB_SALPK 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
paratyphi A (strain AKU_12601) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|C0Q5P4|PANB_SALPC 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
paratyphi C (strain RKS4594) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|Q5PIN3|PANB_SALPA 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=panB PE=3
SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B4SUA8|PANB_SALNS 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
newport (strain SL254) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B4TK05|PANB_SALHS 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
heidelberg (strain SL476) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B5RHC1|PANB_SALG2 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=panB PE=3
SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B5R3E6|PANB_SALEP 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
enteritidis PT4 (strain P125109) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B5FIX8|PANB_SALDC 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
dublin (strain CT_02021853) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|Q57T73|PANB_SALCH 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
choleraesuis (strain SC-B67) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B5F833|PANB_SALA4 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
agona (strain SL483) GN=panB PE=3 SV=1
Length = 263
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 616 LAPVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYD 673
+ P LQ C +K+ I AY + L ADEGI+ V VGD +
Sbjct: 1 MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGH 54
Query: 674 VSTQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLI 724
ST PV++ ++++++R LLSD F + TPEQ
Sbjct: 55 DSTLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAC 97
Query: 725 EP---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
E V+R + ++ G W + +L +
Sbjct: 98 ENAAIVMRAGANMVKIEGGAWLVDTVKMLTE 128
>sp|B9L8R5|CLPS_NAUPA ATP-dependent Clp protease adapter protein ClpS OS=Nautilia
profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH)
GN=clpS PE=3 SV=1
Length = 97
Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 304 VLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIER 363
+L ND++ TF+ VI L ++++AI +DREG AAV + + +K E
Sbjct: 22 MLLNDDYTTFDFVIEILKTVFHKNEEEAINITLKVDREGSAAVGVYPYEIAQ-VKIEKTH 80
Query: 364 FTSRHGNRPIKVAVVNSV 381
+R P++ AV+ V
Sbjct: 81 TLARQAGYPLR-AVMEEV 97
>sp|Q8Z9D2|PANB_SALTI 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Salmonella
typhi GN=panB PE=3 SV=1
Length = 264
Score = 36.6 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 37/149 (24%)
Query: 618 PVITLFLQWCGTDKE--ILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVS 675
P LQ C +K+ I AY + L ADEGI+ V VGD + S
Sbjct: 4 PTTIAVLQKCKQEKKRFATITAYDYSFAKLFADEGIN------VMLVGDSLGMTIQGHDS 57
Query: 676 TQPVSIHLPLSRFLAGLYIHLDKFNLSFYSRE---------LLSDNCFFSRLTPEQLIEP 726
T PV++ ++++++R LLSD F + TPEQ E
Sbjct: 58 TLPVTVE-----------------DIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQAFEN 100
Query: 727 ---VLRTQVMISQVHAGMWRRNGYSLLNQ 752
V+R + ++ G W + +L +
Sbjct: 101 AAIVMRAGANMVKIEGGAWLVDTVKMLTE 129
>sp|A8MRT5|K220L_HUMAN Putative NPIP-like protein LOC100132247 OS=Homo sapiens PE=5 SV=3
Length = 1133
Score = 34.3 bits (77), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 24/154 (15%)
Query: 156 HKYKMGTSNAGGCCDCGDVEAWKKE--------PYCDVHIIGTQKRHESGSILPPDLAQR 207
HK K+ S C+ + A + PY + + H+ PP Q+
Sbjct: 199 HKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQ-----PPPPTQQ 253
Query: 208 ARLTFSSV-LRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCT----VL---- 258
+T +S+ L+ + L T PS +LK PPE VL DN T VL
Sbjct: 254 HSITDNSLSLKTPPECLLTPLPPSADDNLKTPPECVLTPLPPSADDNLKTPPECVLTPLP 313
Query: 259 --YNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVL 290
+D T + L T PS +LK PPE +L
Sbjct: 314 PSADDNLKTPPECLLTPLPPSADDNLKTPPECLL 347
>sp|Q92617|NPPL3_HUMAN Nuclear pore complex-interacting protein-like 3 OS=Homo sapiens
GN=NPIPL3 PE=2 SV=5
Length = 1050
Score = 33.9 bits (76), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 24/151 (15%)
Query: 156 HKYKMGTSNAGGCCDCGDVEAWKKE--------PYCDVHIIGTQKRHESGSILPPDLAQR 207
HK K+ S C+ + A + PY + + H+ PP Q+
Sbjct: 199 HKCKIPPSARKALCNWVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQ-----PPPPTQQ 253
Query: 208 ARLTFSSV-LRYAYQLLTTDYGPSIPLDLKVPPEDVLQITYSHNSDNFCT----VL---- 258
+T +S+ L+ + L T PS +LK PPE VL DN T VL
Sbjct: 254 HSITDNSLSLKTPPECLLTPLPPSADDNLKTPPECVLTPLPPSADDNLKTPPECVLTPLP 313
Query: 259 --YNDEFHTFEQLLTTDYGPSIPLDLKVPPE 287
+D T + L T PS +LK PPE
Sbjct: 314 PSADDNLKTPPECLLTPLPPSADDNLKTPPE 344
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,502,106
Number of Sequences: 539616
Number of extensions: 23068414
Number of successful extensions: 57433
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 57231
Number of HSP's gapped (non-prelim): 123
length of query: 1363
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1233
effective length of database: 121,419,379
effective search space: 149710094307
effective search space used: 149710094307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)