Query psy353
Match_columns 1363
No_of_seqs 442 out of 701
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:01:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ny3_A E3 ubiquitin-protein li 99.9 2.3E-28 7.8E-33 221.5 4.8 74 114-187 2-75 (75)
2 3nis_A E3 ubiquitin-protein li 99.9 3.1E-27 1.1E-31 217.2 6.0 75 113-187 5-81 (82)
3 2e5n_A RNA polymerase II elong 98.9 4.8E-10 1.6E-14 105.9 4.8 80 850-934 13-95 (100)
4 3o1f_A ATP-dependent CLP prote 98.9 1.6E-09 5.4E-14 99.9 7.4 78 300-378 2-79 (81)
5 2w9r_A YLJA, ATP-dependent CLP 98.9 1.4E-09 4.8E-14 105.6 7.2 80 299-379 26-105 (108)
6 2doa_A RNA polymerase II elong 98.9 1E-09 3.5E-14 104.5 5.0 78 850-932 12-92 (104)
7 3dnj_A ATP-dependent CLP prote 98.7 1.2E-08 4.1E-13 94.8 6.9 79 299-378 5-83 (85)
8 3j20_W 30S ribosomal protein S 77.4 0.59 2E-05 40.8 0.6 39 1057-1101 4-47 (63)
9 1bby_A RAP30; average structur 76.2 1.4 4.7E-05 39.4 2.6 43 865-912 24-66 (69)
10 2dip_A Zinc finger SWIM domain 62.9 2.5 8.6E-05 40.3 1.5 42 118-163 36-77 (98)
11 1qxf_A GR2, 30S ribosomal prot 62.6 2.7 9.3E-05 36.9 1.5 29 1073-1101 6-39 (66)
12 3u5c_b RP61, YS20, 40S ribosom 61.7 1.6 5.3E-05 40.0 -0.2 41 1055-1101 21-66 (82)
13 1fre_A Nuclear factor XNF7; zi 60.9 3.7 0.00013 32.4 1.9 37 117-159 4-40 (42)
14 2fc7_A ZZZ3 protein; structure 60.7 8.4 0.00029 35.4 4.5 45 118-163 26-75 (82)
15 2xzm_6 RPS27E; ribosome, trans 60.2 2.2 7.4E-05 39.0 0.5 39 1056-1100 20-63 (81)
16 3iz6_X 40S ribosomal protein S 57.9 1.9 6.5E-05 39.8 -0.3 41 1055-1101 23-68 (86)
17 2did_A Tripartite motif protei 52.4 6.3 0.00021 32.7 2.0 40 116-161 8-47 (53)
18 1tot_A CREB-binding protein; z 50.5 4.8 0.00016 33.9 1.0 37 118-161 11-47 (52)
19 2e5r_A Dystrobrevin alpha; ZZ 49.4 7.7 0.00026 33.9 2.1 41 118-162 16-61 (63)
20 2yvr_A Transcription intermedi 46.5 6.1 0.00021 32.3 1.0 39 116-160 6-44 (50)
21 2yrg_A Tripartite motif-contai 46.0 8.9 0.00031 32.7 2.0 39 117-161 15-53 (59)
22 2dja_A Midline-2; tripartite m 45.2 5.4 0.00019 36.3 0.6 39 117-160 19-57 (84)
23 2csv_A Tripartite motif protei 44.1 11 0.00037 33.4 2.3 38 116-160 18-55 (72)
24 2d8u_A Ubiquitin ligase TRIM63 39.5 8.9 0.0003 32.9 1.0 40 116-160 8-47 (64)
25 3ddt_A E3 ubiquitin-protein li 36.2 9.3 0.00032 31.0 0.6 39 117-160 7-45 (48)
26 3c5k_A HD6, histone deacetylas 32.3 18 0.00062 35.0 2.0 48 1075-1137 25-72 (109)
27 4b6d_A RAC GTPase-activating p 31.3 20 0.00068 31.0 1.9 21 117-137 23-43 (61)
28 2egm_A Tripartite motif-contai 30.0 7.8 0.00027 32.9 -0.9 39 115-159 17-55 (57)
29 2d8v_A Zinc finger FYVE domain 29.3 28 0.00097 30.6 2.4 33 126-161 16-52 (67)
30 1wg2_A Zinc finger (AN1-like) 28.3 30 0.001 30.4 2.4 26 1075-1101 16-41 (64)
31 1wfh_A Zinc finger (AN1-like) 25.1 38 0.0013 29.8 2.4 26 1075-1101 16-41 (64)
32 1wfp_A Zinc finger (AN1-like) 22.9 41 0.0014 30.3 2.3 26 1075-1101 26-51 (74)
33 2g45_A Ubiquitin carboxyl-term 21.9 37 0.0013 33.8 2.1 26 1075-1102 35-60 (129)
No 1
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=99.94 E-value=2.3e-28 Score=221.54 Aligned_cols=74 Identities=62% Similarity=1.364 Sum_probs=68.6
Q ss_pred CCccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEEecCCCccccCCCccccCCCCCCCcCC
Q psy353 114 NPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGDVEAWKKEPYCDVHI 187 (1363)
Q Consensus 114 ~~~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~ 187 (1363)
.++++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.|.+||+|||||+||||+++||++|.
T Consensus 2 ~~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~ 75 (75)
T 3ny3_A 2 PLGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE 75 (75)
T ss_dssp ----CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred CCCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence 35689999999999999999999999999999999999999999999999889999999999999999999994
No 2
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=99.93 E-value=3.1e-27 Score=217.24 Aligned_cols=75 Identities=45% Similarity=1.013 Sum_probs=71.0
Q ss_pred CCCccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEEecC--CCccccCCCccccCCCCCCCcCC
Q psy353 113 DNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSN--AGGCCDCGDVEAWKKEPYCDVHI 187 (1363)
Q Consensus 113 ~~~~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~~s~--~gG~CDCGD~eawk~~~fC~~H~ 187 (1363)
..++++||++|++||++|+|+||++|+||+||.+||++++|+||+|+|+.|. +||+|||||+||||+++||+.|.
T Consensus 5 ~h~g~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~eawk~~~fC~~~~ 81 (82)
T 3nis_A 5 KHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEE 81 (82)
T ss_dssp CCTTSCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGGBSSCCCCGGGC
T ss_pred ccCCCCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHHhCCCCCCCCCc
Confidence 3568999999999999999999999999999999999999999999999884 68999999999999999999885
No 3
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.8e-10 Score=105.87 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCCChHHHhhhCCCCCCC---cchHHHHHHHhhcccCCCcCCCCceeeeccccccccCcccccCChHH
Q psy353 850 CIKKEIIQQLCIKPLPHSELNKALPDDSNH---ETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREE 926 (1363)
Q Consensus 850 ~irreIIh~Lc~~p~t~SeL~~~lpe~~~~---~~~fe~iL~eVA~Fk~P~g~~d~G~Y~LK~E~~~e~DPyf~hYsr~~ 926 (1363)
-+|..|||.|+++|.+.+||..+|..+... ...|+.||+|||++.+++ |.|+||+++|+|+++.+++||.++
T Consensus 13 plReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~~-----~~y~Lk~~~~~eVq~dWp~Yte~e 87 (100)
T 2e5n_A 13 PYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKD-----LSYTLKDYVFKELQRDWPGYSEID 87 (100)
T ss_dssp CHHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETTT-----TEEEECSTHHHHSCTTCTTCCTTH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCcC-----CeeehhHHHHHHhccCCCCCCHHH
Confidence 489999999999999999999999876544 567999999999998763 799999999999999999999999
Q ss_pred HHHHHHHH
Q psy353 927 VSRSEEEQ 934 (1363)
Q Consensus 927 ~~~Ae~~~ 934 (1363)
++.-...+
T Consensus 88 rq~v~r~L 95 (100)
T 2e5n_A 88 RRSLESVL 95 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 97655443
No 4
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=98.92 E-value=1.6e-09 Score=99.88 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=62.4
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCeEEEccCcccchhHHHHHhhhcccCCCCCcEEEEE
Q psy353 300 NFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVV 378 (1363)
Q Consensus 300 ~y~vvL~NDE~HtfdqVi~~L~~a~~~s~~~A~~~A~~ID~~GRavVk~~~~~~c~~~k~~I~~f~~~~~s~~L~v~v~ 378 (1363)
.|.|+||||++||||.||..|++.++++.++|.+++..||.+||++|.+++.+..+.-...+..+ .+...-||++++-
T Consensus 2 ~y~Vil~NDd~~tme~Vi~vL~~vf~~~~~~A~~iml~vH~~G~avv~~~~~e~AE~k~~~v~~~-ar~~~~PL~~t~e 79 (81)
T 3o1f_A 2 MYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAXVNKY-ARENEHPLLCTLE 79 (81)
T ss_dssp CEEEEEECCSSSCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHHHHHHHH-HHHTTCCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHHHHHHHH-HHHcCCCceEEEe
Confidence 47899999999999999999999999999999999999999999999999875433333333222 1223349998875
No 5
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=98.91 E-value=1.4e-09 Score=105.56 Aligned_cols=80 Identities=16% Similarity=0.333 Sum_probs=68.6
Q ss_pred CceEEEEecCCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCeEEEccCcccchhHHHHHhhhcccCCCCCcEEEEE
Q psy353 299 DNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVV 378 (1363)
Q Consensus 299 ~~y~vvL~NDE~HtfdqVi~~L~~a~~~s~~~A~~~A~~ID~~GRavVk~~~~~~c~~~k~~I~~f~~~~~s~~L~v~v~ 378 (1363)
+.|.|+||||++|||+.||+.|++.++++.++|.+++..||.+||++|.+++.+.++...+.+.++. +....||++++-
T Consensus 26 ~~y~ViL~NDd~ttmefVv~vL~~~f~~~~~~A~~iml~VH~~G~avv~~~~~e~AE~k~~~l~~~a-r~~~~pL~~t~E 104 (108)
T 2w9r_A 26 SMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYA-RENEHPLLCTLE 104 (108)
T ss_dssp CEEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHH-HHTTCCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHHHHH-HhCCCCcEEEEE
Confidence 5699999999999999999999999999999999999999999999999999887776666665432 223459999886
Q ss_pred e
Q psy353 379 N 379 (1363)
Q Consensus 379 ~ 379 (1363)
.
T Consensus 105 ~ 105 (108)
T 2w9r_A 105 K 105 (108)
T ss_dssp E
T ss_pred e
Confidence 4
No 6
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=98.88 E-value=1e-09 Score=104.47 Aligned_cols=78 Identities=17% Similarity=0.321 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCCChHHHhhhCCCCCCC---cchHHHHHHHhhcccCCCcCCCCceeeeccccccccCcccccCChHH
Q psy353 850 CIKKEIIQQLCIKPLPHSELNKALPDDSNH---ETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVFFYHYSREE 926 (1363)
Q Consensus 850 ~irreIIh~Lc~~p~t~SeL~~~lpe~~~~---~~~fe~iL~eVA~Fk~P~g~~d~G~Y~LK~E~~~e~DPyf~hYsr~~ 926 (1363)
-+|..|||.|+++|.+.+||..+|..+... ...|+.||+|||++.++. |.|+||+++|+|+|+.+++||.+|
T Consensus 12 plReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~~-----~~y~Lk~~~y~eVq~dWp~Yte~e 86 (104)
T 2doa_A 12 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKD-----GTCTLQDCMYKDVQKDWPGYSEGD 86 (104)
T ss_dssp CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSSS-----CEEECCSSGGGGCCSCCTTCCSHH
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcC-----CeeeehHHHHHHhcCCCCCCCHHH
Confidence 489999999999999999999999876544 567999999999998653 799999999999999999999988
Q ss_pred HHHHHH
Q psy353 927 VSRSEE 932 (1363)
Q Consensus 927 ~~~Ae~ 932 (1363)
++.-..
T Consensus 87 rq~v~r 92 (104)
T 2doa_A 87 QQLLKR 92 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865443
No 7
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=98.74 E-value=1.2e-08 Score=94.80 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=62.5
Q ss_pred CceEEEEecCCCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcccCCeEEEccCcccchhHHHHHhhhcccCCCCCcEEEEE
Q psy353 299 DNFCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVV 378 (1363)
Q Consensus 299 ~~y~vvL~NDE~HtfdqVi~~L~~a~~~s~~~A~~~A~~ID~~GRavVk~~~~~~c~~~k~~I~~f~~~~~s~~L~v~v~ 378 (1363)
+.|-|+||||++||++.||..|++.++.+.++|.+++..||.+||++|..++.+.++.-.+.+..+. +...-||.+++-
T Consensus 5 ~~y~Vil~NDd~~tme~Vv~vL~~vf~~~~e~A~~iml~VH~~G~avv~~~~~e~AE~k~~q~~~~a-r~~~~pL~~t~e 83 (85)
T 3dnj_A 5 SLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSA-RRHQHPLQCTME 83 (85)
T ss_dssp -CEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHHHHHHHHH-HHTTCCCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCcEEEEEecHHHHHHHHHHHHHHH-HHcCCCceEEec
Confidence 4689999999999999999999999999999999999999999999999999764443333332211 112348888764
No 8
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.35 E-value=0.59 Score=40.77 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=30.4
Q ss_pred cccCCCchHHHHHHhhcccccCCCCCC-----CCCCceeecccccccccC
Q psy353 1057 RLINLPDDYSELINTVSLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 1101 (1363)
Q Consensus 1057 ~Li~LP~~y~~l~~~~~~~~C~~c~~~-----~~~~paiCL~CG~~lC~q 1101 (1363)
+||+-|++|- .+.+||.|+.. ..+.+..|..||++||--
T Consensus 4 rLv~~PnS~F------m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 4 PIIPMPRSRF------LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEP 47 (63)
T ss_dssp GGCCCCSCCE------EEEECSSSCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred ccccCCCCcE------EEEECCCCCCeeEEEecCCeEEEccCcCCEEecC
Confidence 6888888763 36789999962 247899999999999853
No 9
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=76.21 E-value=1.4 Score=39.38 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=31.0
Q ss_pred ChHHHhhhCCCCCCCcchHHHHHHHhhcccCCCcCCCCceeeeccccc
Q psy353 865 PHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFY 912 (1363)
Q Consensus 865 t~SeL~~~lpe~~~~~~~fe~iL~eVA~Fk~P~g~~d~G~Y~LK~E~~ 912 (1363)
|..+|..... +.+.-+-+||++||++..- | ..+|.|+|||||-
T Consensus 24 ~lK~L~~~t~---QP~~yLKeiL~~Ia~~~k~-g-~~~~~weLKpEyr 66 (69)
T 1bby_A 24 NLKDLVDITK---QPVVYLKEILKEIGVQNVK-G-IHKNTWELKPEYR 66 (69)
T ss_dssp CHHHHHHHCC---SCHHHHHHHHHHHCCCBCC-T-TCCCBBCCCCSSC
T ss_pred cHHHHHHHHc---CcHHHHHHHHHHHHHHHcC-C-CCCCeeeCcHHHh
Confidence 4444544432 2456789999999999864 4 3699999999975
No 10
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=62.91 E-value=2.5 Score=40.25 Aligned_cols=42 Identities=29% Similarity=0.677 Sum_probs=31.4
Q ss_pred ccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEEec
Q psy353 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTS 163 (1363)
Q Consensus 118 ~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~~s 163 (1363)
.|+..--.| .-|+|..|. ..-||..||..+.|..|.|.....
T Consensus 36 ~C~~~pI~G-~RykC~~C~---d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 36 NCKQFPIEG-KCYKCTECI---EYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp SSCCSSCCS-CEEEESSSS---SCEEEHHHHHTTSGGGSCEEECCS
T ss_pred CCCCCCccc-CeEECCCCC---CccHHHHHHccCCCCCCCeeEecC
Confidence 355432233 679999994 366999999999999999987654
No 11
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=62.61 E-value=2.7 Score=36.94 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=23.0
Q ss_pred cccccCCCCCC-----CCCCceeecccccccccC
Q psy353 1073 SLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 1101 (1363)
Q Consensus 1073 ~~~~C~~c~~~-----~~~~paiCL~CG~~lC~q 1101 (1363)
.+.+||.|+.. ..+.++.|..||++||--
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 45689999962 237899999999999853
No 12
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=61.66 E-value=1.6 Score=40.01 Aligned_cols=41 Identities=22% Similarity=0.550 Sum_probs=31.5
Q ss_pred cccccCCCchHHHHHHhhcccccCCCCCC-----CCCCceeecccccccccC
Q psy353 1055 INRLINLPDDYSELINTVSLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 1101 (1363)
Q Consensus 1055 ~~~Li~LP~~y~~l~~~~~~~~C~~c~~~-----~~~~paiCL~CG~~lC~q 1101 (1363)
..+||+-|++|- .+.+|+.|+.. ..+.++.|..||++||--
T Consensus 21 ~k~Lv~~PnS~F------m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 21 LKTLVQGPRSYF------LDVKCPGCLNITTVFSHAQTAVTCESCSTILCTP 66 (82)
T ss_dssp TTSSSCCCCCCE------EEEECTTSCSCEEEESBCSSCCCCSSSCCCCEEC
T ss_pred heeeccCCCCcE------EEEECCCCCCeeEEEecCCeEEEccccCCEEecc
Confidence 356888888763 36789999963 236789999999999853
No 13
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=60.93 E-value=3.7 Score=32.37 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=26.6
Q ss_pred cccccccccCccEEEeccccCCCCccccccccCCCCCCCceEE
Q psy353 117 SVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYK 159 (1363)
Q Consensus 117 ~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~ 159 (1363)
..|+.-- ....|-|.+|+ ..+|..|+..+.|.||++.
T Consensus 4 ~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~ 40 (42)
T 1fre_A 4 EKCSEHD--ERLKLYCKDDG----TLSCVICRDSLKHASHNFL 40 (42)
T ss_dssp CCCCSSC--SSCCCCCCSSS----SSSCCTTSSCSSCTTCCCC
T ss_pred ccchhhC--CeeeEEeCCCC----eEEeccCCCCCCCCCCcEe
Confidence 4576552 34556677654 3599999999999999863
No 14
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=60.71 E-value=8.4 Score=35.45 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=31.6
Q ss_pred ccccccccCccEEEeccccCCCCccccccccCC----CCC-CCceEEEEec
Q psy353 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKK----STH-RNHKYKMGTS 163 (1363)
Q Consensus 118 ~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~----s~H-~~H~~~~~~s 163 (1363)
.|+..--.| .-|+|.+|.-+...-||..||.. ..| ..|.+..+..
T Consensus 26 ~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~ 75 (82)
T 2fc7_A 26 NCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR 75 (82)
T ss_dssp SSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred CCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeC
Confidence 355432223 67999999765557899999975 567 5899887543
No 15
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=60.24 E-value=2.2 Score=39.04 Aligned_cols=39 Identities=26% Similarity=0.669 Sum_probs=30.5
Q ss_pred ccccCCCchHHHHHHhhcccccCCCCCC-----CCCCceeeccccccccc
Q psy353 1056 NRLINLPDDYSELINTVSLFTCPNSDRE-----DSRNPALCLICGDMLCS 1100 (1363)
Q Consensus 1056 ~~Li~LP~~y~~l~~~~~~~~C~~c~~~-----~~~~paiCL~CG~~lC~ 1100 (1363)
.+||+=|++|- .+.+||.|+.. ..+.++.|..||++||-
T Consensus 20 k~Lv~~PnS~F------m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 20 KRLIQAPNSYF------MDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp TSSSCCCSCCE------EEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred eeeeeCCCCcE------EEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 46888887753 36689999962 23689999999999985
No 16
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=57.89 E-value=1.9 Score=39.81 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=23.9
Q ss_pred cccccCCCchHHHHHHhhcccccCCCCCC-----CCCCceeecccccccccC
Q psy353 1055 INRLINLPDDYSELINTVSLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 1101 (1363)
Q Consensus 1055 ~~~Li~LP~~y~~l~~~~~~~~C~~c~~~-----~~~~paiCL~CG~~lC~q 1101 (1363)
..+||+-|++|- .+.+|+.|+.. ..+-++.|..||++||--
T Consensus 23 ~k~Lv~~PnS~F------m~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 23 KKRLVQSPNSFF------MDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp ----------CE------EEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred heeeccCCCCcE------eEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 346788787753 35689999962 236789999999999853
No 17
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=52.42 E-value=6.3 Score=32.71 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=30.9
Q ss_pred ccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEE
Q psy353 116 PSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMG 161 (1363)
Q Consensus 116 ~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~ 161 (1363)
...|+.-- ....|-|.+|+ ..+|..|+..+.|.+|++.-.
T Consensus 8 ~~~C~~H~--e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 8 ESLCPQHH--EALSLFCYEDQ----EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp CCBCTTTC--CBCCEEESSSC----SEECHHHHTSSTTTTSCEEEC
T ss_pred CCcChhhC--CeeeEEeCCCC----eEEeccccCCCCCCCCcEeeH
Confidence 45687653 45678888875 469999999999999998754
No 18
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=50.50 E-value=4.8 Score=33.86 Aligned_cols=37 Identities=24% Similarity=0.690 Sum_probs=28.1
Q ss_pred ccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEE
Q psy353 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMG 161 (1363)
Q Consensus 118 ~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~ 161 (1363)
.|++.. | .-|+|.+|. .--||..||..+.| +|....+
T Consensus 11 ~C~~~i--g-~R~~C~~C~---dyDLC~~C~~~~~H-~H~m~~~ 47 (52)
T 1tot_A 11 ECKHHV--E-TRWHCTVCE---DYDLCINCYNTKSH-THKMVKW 47 (52)
T ss_dssp TTTEEE--S-SEEEESSSS---SCEECHHHHHHHCC-CSSEEEE
T ss_pred CCCCCC--c-ceEEcCCCC---CchhHHHHHhCCCC-CCceEEe
Confidence 366652 3 679999995 45699999999999 6876643
No 19
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.43 E-value=7.7 Score=33.90 Aligned_cols=41 Identities=37% Similarity=0.740 Sum_probs=28.7
Q ss_pred ccccccccCccEEEeccccCCCCccccccccCCCC----CC-CceEEEEe
Q psy353 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKST----HR-NHKYKMGT 162 (1363)
Q Consensus 118 ~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~----H~-~H~~~~~~ 162 (1363)
.|+..--.| .-|+|.+|. ..-||..||..+. |. .|.+..+.
T Consensus 16 ~C~~~pi~G-~RykC~~C~---d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 16 YCHSESMMG-FRYRCQQCH---NYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SSCCCSSCS-CEEEESSCS---SCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCCcceec-ceEEecCCC---CchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 366542224 789999994 3669999998775 64 67777654
No 20
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=46.51 E-value=6.1 Score=32.31 Aligned_cols=39 Identities=23% Similarity=0.600 Sum_probs=28.0
Q ss_pred ccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEE
Q psy353 116 PSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKM 160 (1363)
Q Consensus 116 ~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~ 160 (1363)
...|+.-- .....|-|.+|+ ..+|..|.. +.|.||++.-
T Consensus 6 ~~~C~~H~-~e~l~lfC~~~~----~~iC~~C~~-~~H~~H~~~~ 44 (50)
T 2yvr_A 6 TVYCNVHK-HEPLVLFCESCD----TLTCRDCQL-NAHKDHQYQF 44 (50)
T ss_dssp SCBCSSST-TCBCCEEETTTT----EEECHHHHH-TTTTTCCEEE
T ss_pred CCcCcCCC-CCCEEEEeCCCC----EEEecccCC-CcCCCCceec
Confidence 45676432 234668899886 468999988 6999999864
No 21
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.97 E-value=8.9 Score=32.74 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=30.0
Q ss_pred cccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEEE
Q psy353 117 SVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMG 161 (1363)
Q Consensus 117 ~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~~ 161 (1363)
..|+.-- ....|-|.+|+. .+|..|+..+.|.+|++.-.
T Consensus 15 ~~C~~H~--e~L~lfC~~d~~----~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 15 DHCARHG--EKLLLFCQEDGK----VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp SBCTTTC--CBCCEEETTTCS----EECHHHHTSTTTTTCCEEEC
T ss_pred ccChhhC--ceeeeecCCCCc----EEecccCCCCcCCCCcEeeH
Confidence 5687653 356678887754 68999999999999998754
No 22
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=45.19 E-value=5.4 Score=36.27 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=29.1
Q ss_pred cccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEE
Q psy353 117 SVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKM 160 (1363)
Q Consensus 117 ~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~ 160 (1363)
..|+.-= ....-|-|.+|+ ..+|..|+..+.|.||++.-
T Consensus 19 ~~C~~H~-~e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 57 (84)
T 2dja_A 19 ITCLDHE-NEKVNMYCVSDD----QLICALCKLVGRHRDHQVAS 57 (84)
T ss_dssp CCCSSCS-SSCCCEEETTTT----EEECHHHHHTSTTTTCCBCC
T ss_pred CcCcCcC-CccccEEcCCCC----ceEcccCcCCCCCCCCCccC
Confidence 4686421 123778899887 46899999999999999764
No 23
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=44.12 E-value=11 Score=33.37 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=29.6
Q ss_pred ccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEE
Q psy353 116 PSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKM 160 (1363)
Q Consensus 116 ~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~ 160 (1363)
...|+.- ....-|-|.+|+. .+|..|+. +.|.+|++.-
T Consensus 18 ~~~C~~H--~e~l~lfC~~d~~----~iC~~C~~-~~H~~H~~~~ 55 (72)
T 2csv_A 18 ARKCPVH--GKTMELFCQTDQT----CICYLCMF-QEHKNHSTVT 55 (72)
T ss_dssp CCBCTTT--CCBCCEEESSSCC----EECHHHHH-TTTSSSCEEE
T ss_pred cCcCccc--CCceEEEeCCCCe----EEccccCC-CCCCCCCEec
Confidence 4578776 2566788998864 68999998 9999999864
No 24
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=39.49 E-value=8.9 Score=32.92 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=28.7
Q ss_pred ccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEE
Q psy353 116 PSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKM 160 (1363)
Q Consensus 116 ~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~ 160 (1363)
...|+.-- .....|-|.+|. ..+|..|...+.|.+|++.-
T Consensus 8 ~~~C~~H~-~e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 8 HPMCKEHE-DEKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCCCSSCT-TCCCCSEESSSC----CCCCSHHHHSSSTTSSCEEC
T ss_pred CCcCcCcC-CCccceEcCcCC----ceeCccccCCCcCCCCCeeC
Confidence 35676531 123567788886 35999999989999999864
No 25
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=36.20 E-value=9.3 Score=31.01 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=28.0
Q ss_pred cccccccccCccEEEeccccCCCCccccccccCCCCCCCceEEE
Q psy353 117 SVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKM 160 (1363)
Q Consensus 117 ~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~~ 160 (1363)
..|..-=+ -...+-|.+|. ..+|..|...+.|.+|++.-
T Consensus 7 ~~C~~H~~-e~l~lfC~~d~----~~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 7 PMCKEHED-EKINIYCLTCE----VPTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp CBCSSSTT-SBCCEEETTTT----EEECHHHHHHSTTTTSCEEE
T ss_pred CcCCCCCC-ccccEEcCCCC----eeEcccccCCCcCCCCcEEe
Confidence 45764210 23568899885 47999999888999999764
No 26
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=32.31 E-value=18 Score=34.98 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=31.7
Q ss_pred cccCCCCCCCCCCceeecccccccccCCcccccccccccccccccccccccCCCeeEEEEecc
Q psy353 1075 FTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVRE 1137 (1363)
Q Consensus 1075 ~~C~~c~~~~~~~paiCL~CG~~lC~q~~cC~~~~~~~~~~G~c~~H~~~Cg~g~GiFl~i~~ 1137 (1363)
.+|..|+.. .+.-+||.||.+.|..+. -+-.+.|..+- +-.+++.+..
T Consensus 25 ~~C~~C~~~--~~~W~CL~CG~vgCgr~~-----------~~HA~~H~~~t--~H~~~~~l~~ 72 (109)
T 3c5k_A 25 QPCGDCGTI--QENWVCLSCYQVYCGRYI-----------NGHMLQHHGNS--GHPLVLSYID 72 (109)
T ss_dssp CCCTTTCCC--SSEEEETTTCCEEECTTT-----------TCHHHHHHHHH--CCCEEEETTT
T ss_pred CcCccccCC--CCeeeeeecCccccCCCc-----------ChHHHHHhccc--CCCEEEECCC
Confidence 479999974 578999999999986542 12345666542 3444555553
No 27
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=31.29 E-value=20 Score=31.05 Aligned_cols=21 Identities=33% Similarity=0.961 Sum_probs=18.7
Q ss_pred cccccccccCccEEEeccccC
Q psy353 117 SVCGRVFKMGEPTYNCRECGM 137 (1363)
Q Consensus 117 ~~Cg~vf~~ge~~y~C~~C~~ 137 (1363)
..||..++-|-..|+|++|++
T Consensus 23 ~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 23 VPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp TTTCCEECTTCEEEEESSSSC
T ss_pred ccccCEEEEeeEeeECCCCCC
Confidence 468999988999999999986
No 28
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.01 E-value=7.8 Score=32.90 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=29.7
Q ss_pred CccccccccccCccEEEeccccCCCCccccccccCCCCCCCceEE
Q psy353 115 PPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYK 159 (1363)
Q Consensus 115 ~~~~Cg~vf~~ge~~y~C~~C~~d~tcvlC~~CF~~s~H~~H~~~ 159 (1363)
....|+.- .....|-|.+|+ ..+|..|+....|++|++.
T Consensus 17 ~~~~C~~H--~e~L~lfC~~d~----~~iC~~C~~~~eH~~H~~~ 55 (57)
T 2egm_A 17 DQGICPKH--QEALKLFCEVDE----EAICVVCRESRSHKQHSVV 55 (57)
T ss_dssp TTSBCTTT--CCBCCEEETTTT----EEECHHHHHSHHHHSSCEE
T ss_pred ccCcChhh--CceeeEEcCCCC----cEEecccCCCCCCCCCcEe
Confidence 34579776 245677788765 4699999999999999874
No 29
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=29.29 E-value=28 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.623 Sum_probs=24.3
Q ss_pred CccEEEeccccCCCCccccccccCC----CCCCCceEEEE
Q psy353 126 GEPTYNCRECGMDATCVLCVDCFKK----STHRNHKYKMG 161 (1363)
Q Consensus 126 ge~~y~C~~C~~d~tcvlC~~CF~~----s~H~~H~~~~~ 161 (1363)
.+.++||..|.-| ..|..||.. .+-++|+..-+
T Consensus 16 eDAtlrC~gCdgD---LYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 16 EDATLRCAGCDGD---LYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp SCCCEEETTTTSE---EECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCCeEEecCCCCc---eehHHHHHHHccchhhhccceeec
Confidence 4688999999866 899999964 23356776554
No 30
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.28 E-value=30 Score=30.38 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=20.8
Q ss_pred cccCCCCCCCCCCceeecccccccccC
Q psy353 1075 FTCPNSDREDSRNPALCLICGDMLCSQ 1101 (1363)
Q Consensus 1075 ~~C~~c~~~~~~~paiCL~CG~~lC~q 1101 (1363)
.+|..|++.+.--+.-| .||..+|+.
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp CSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred CcChhhCCcccccCeEe-ecCCEeccc
Confidence 47999998544347889 899999985
No 31
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.06 E-value=38 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=20.8
Q ss_pred cccCCCCCCCCCCceeecccccccccC
Q psy353 1075 FTCPNSDREDSRNPALCLICGDMLCSQ 1101 (1363)
Q Consensus 1075 ~~C~~c~~~~~~~paiCL~CG~~lC~q 1101 (1363)
.+|..|++.+.--+.-| .||..+|+.
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred CcChhhCCccCccCEEe-ecCCEeccc
Confidence 47999998544447889 799999985
No 32
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.90 E-value=41 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.576 Sum_probs=21.4
Q ss_pred cccCCCCCCCCCCceeecccccccccC
Q psy353 1075 FTCPNSDREDSRNPALCLICGDMLCSQ 1101 (1363)
Q Consensus 1075 ~~C~~c~~~~~~~paiCL~CG~~lC~q 1101 (1363)
.+|..|++.+.--+..| .||..+|+.
T Consensus 26 ~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 26 TRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred ccchhhcCcccccceEe-ccCCEeccc
Confidence 47999998655457999 899999985
No 33
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=21.94 E-value=37 Score=33.78 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=21.7
Q ss_pred cccCCCCCCCCCCceeecccccccccCC
Q psy353 1075 FTCPNSDREDSRNPALCLICGDMLCSQS 1102 (1363)
Q Consensus 1075 ~~C~~c~~~~~~~paiCL~CG~~lC~q~ 1102 (1363)
.+|..|+.. .+.-+||.||.+-|...
T Consensus 35 ~~C~~C~~~--~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 35 WKCSKCDMR--ENLWLNLTDGSILCGRR 60 (129)
T ss_dssp CCCSSSSCC--SSEEEETTTCCEEECCB
T ss_pred CcCccccCc--CceEEeccCCccccCcc
Confidence 479999974 58999999999998654
Done!