RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy353
(1363 letters)
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin
ligase, protein binding, lygase,; 1.60A {Homo sapiens}
PDB: 3ny2_A 3ny1_A
Length = 75
Score = 118 bits (297), Expect = 6e-32
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 114 NPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCGD 173
S+CGRVFK+GEPTY+CR+C +D TCVLC++CF S HR+H+Y+M TS GG CDCGD
Sbjct: 2 PLGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGD 61
Query: 174 VEAWKKEPYCDVH 186
EAWK+ PYC H
Sbjct: 62 TEAWKEGPYCQKH 74
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX,
zinc-binding protein, N-END RU ligase, metal binding
protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A
3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Length = 82
Score = 116 bits (291), Expect = 4e-31
Identities = 36/79 (45%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 110 SQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKY--KMGTSNAGG 167
S + CGR FK+GEP Y C ECG D TCVLC+ CF H NH + T G
Sbjct: 2 SVHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDICTEFTSG 61
Query: 168 CCDCGDVEAWKKEPYCDVH 186
CDCGD EAW +C
Sbjct: 62 ICDCGDEEAWNSPLHCKAE 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 2e-11
Identities = 76/529 (14%), Positives = 170/529 (32%), Gaps = 170/529 (32%)
Query: 197 GSI-----LPPDL---AQRARLTFSSVLRYAYQLLTTDYGPSIPLDL----------KVP 238
GS+ +P A + + F+ +L + D P+ P +L V
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 239 P------EDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYGPSIPLDLKVPPEDVLQI 292
P + VL + + + + L ++ H L + ++ K +++++
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAKLLQENDTTLV---KT--KELIKN 125
Query: 293 TYS------------HNSD----------NFCTVL--------YNDE----FHTFEQVIN 318
+ NS + Y +E + T+ ++
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 319 TLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSEIERFTSRHGNR-----PI 373
L++ + E ++ + R A K F+ ++ +E ++ PI
Sbjct: 186 DLIKF-------SAETLSELIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 374 KVAVVNSVVIAHQIYAMRLLTWLQKVLGYS-ESFRMLFS--EVCLEEKAPDLSIVEGILV 430
++ + +AH Y + K+LG++ R + +V + +
Sbjct: 237 SCPLIGVIQLAH--YVV-----TAKLLGFTPGELRSYLKGATGHSQ------GLVTAVAI 283
Query: 431 KDSQLW----KAAR--LHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHS 484
++ W + R + LF G +++ SI++D ++++
Sbjct: 284 AETDSWESFFVSVRKAITV--LFFIG----VRCYEAYPNTSLPP--SILEDSLENNEGVP 335
Query: 485 ---FSIGSMS---VQIYTVPTLAHYLIAHEDV---L------FIL------LSTFISECT 523
SI +++ VQ Y V +L A + V L ++ L
Sbjct: 336 SPMLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL- 393
Query: 524 RKLNKKKKLEFERNIPNASFKRAQYILYDLRYL-LGVPPDTWTPELRKGFAHGLQFLLDL 582
RK L+ R IP + +R + + R+L + P F H
Sbjct: 394 RKAKAPSGLDQSR-IPFS--ERK--LKFSNRFLPVASP-----------F-HS------- 429
Query: 583 LSYMQGMDEVTRQVGQHMEYEP-EWESAFNLHIKLAPVITLFLQWCGTD 630
+ + + + + + + ++ I PV + + G+D
Sbjct: 430 -HLLV---PASDLINKDLVKNNVSFNAK-DIQI---PV---YDTFDGSD 467
Score = 67.4 bits (164), Expect = 3e-11
Identities = 107/710 (15%), Positives = 202/710 (28%), Gaps = 282/710 (39%)
Query: 552 DLRYLLGVPPDTWTP--ELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESA 609
L ++L VP ++ +L++ F L E T + EP +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILP-------------EPTEGFAA--DDEPT--TP 57
Query: 610 FNLHIKLAPVITLFLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVAC 669
L K FL + ++ ++G+ +V + +
Sbjct: 58 AELVGK-------FLG-------------------YVSSL-VEPSKVGQFDQVLNLCLTE 90
Query: 670 LHYDVSTQPVSIHLPLSRFLAGLYIH--------------LDKFNL--SFY-SRELLSDN 712
+ +L G IH + L ++ +R +
Sbjct: 91 FE--------------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 713 CFFSRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLL-----NQIYFYHNVKCRNEMLD 767
F + + L V + ++ YF E+ D
Sbjct: 137 --FDKKSNSALFRAVGEGNAQL------------VAIFGGQGNTDDYF-------EELRD 175
Query: 768 ---------KDII------LLQIGASLIESNEFLIHVLNKFNLINWVYVNFESNSLKNPE 812
D+I L ++ + +++ + N++ W L+NP
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG---LNILEW---------LENPS 223
Query: 813 EESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLC-------IKPLP 865
+++L L I I+ P IG + QL +
Sbjct: 224 NTP-------DKDYL-LSIPIS----CPLIG------------VIQLAHYVVTAKLLGFT 259
Query: 866 HSELNKALPDDSNHETGL--ERVI---NEIADFKKPTQSSGKGVYELKPEFYDGYNVFFY 920
EL L + H GL I + F S K + L F+ G
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESF---FVSVRKAITVL---FFIGV----- 308
Query: 921 HYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDV-----MLHVM 975
R E P LPP S++ + L+ + ML +
Sbjct: 309 --------RC---Y----------EAYPNTSLPP-----SILEDSLENNEGVPSPMLSIS 342
Query: 976 SL---VLERSIN-LRARSFSEAQLHKILHLIGYALHEEESGN-YQFFTFTDRAEK-WNIE 1029
+L ++ +N + + Q+ I +L N + + + + +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVE-I------SLV-----NGAKNLVVSGPPQSLYGLN 390
Query: 1030 QHIEELCSSPRVEAHKVP-QDRKPLEINR-L-INLP------DDYSELI------NTVSL 1074
+ + + ++ ++P +RK NR L + P S+LI N VS
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 1075 ----FTCP------NSD-REDSRN--PALCLICGDMLCSQSYCCQTELFFKMSVGACTYH 1121
P SD R S + + D + + E +
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIV----DCIIRL--PVKWETTTQFKA------ 498
Query: 1122 SHF--CG----AGVG-MFLRVRE---CEVLFLASPNRGCFMSPPYLDDYG 1161
+H G +G+G + R ++ V+ + + P DDYG
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN----PD--DDYG 542
Score = 66.2 bits (161), Expect = 7e-11
Identities = 108/637 (16%), Positives = 199/637 (31%), Gaps = 216/637 (33%)
Query: 364 FTSRHGNRPIKVAVVNSVVIAHQIY--AMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPD 421
T HG+ ++ +++ + A +L E F + E E A D
Sbjct: 9 LTLSHGS--LEH----VLLVPTASFFIASQL----------QEQFNKILPEP-TEGFAAD 51
Query: 422 ---LSIVEGILVKDSQLWKAAR-LHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFI 477
+ E L + L ++S L+E F +V ++
Sbjct: 52 DEPTTPAE--------LV--GKFLG----YVS-SLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 478 KDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERN 537
+ + H+ + + T LI +I+ R + K+ F++
Sbjct: 97 EGNDIHAL-AAKLLQENDTTLVKTKELI----------KNYIT--ARIMAKRP---FDKK 140
Query: 538 IPNASFKRAQYILYDLRYLL----GVPPDTWTPELR------KGFAHGL-----QFLLDL 582
+A F+ L + G D + ELR L + L +L
Sbjct: 141 SNSALFRAVGEGNAQL-VAIFGGQG-NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 583 LS--------YMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLA-PVITLFLQWCGTDKEI 633
+ + QG++ + ++ P+ + + L I ++ P+I + +Q
Sbjct: 199 IRTTLDAEKVFTQGLN--ILEWLENPSNTPDKD--YLLSIPISCPLIGV-IQLA------ 247
Query: 634 LIKAYRATMKTLCADEGIDLGQLGE-VREVGDHS----VACL---------HYDVSTQPV 679
Y T K L G G+L ++ HS A + + +
Sbjct: 248 ---HYVVTAKLL----GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 680 SIHLPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFF-----------SRLTPEQLIEPVL 728
++ L F G+ + + + + +L D+ S LT EQ+ + V
Sbjct: 301 TV---L--FFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 729 RT--------QVMISQVHAGMWRRN----GY--SL--LNQIYFYHNVKCRNEMLDKDII- 771
+T QV IS V+ +N G SL LN K + LD+ I
Sbjct: 355 KTNSHLPAGKQVEISLVNG---AKNLVVSGPPQSLYGLNLTL--RKAKAPSG-LDQSRIP 408
Query: 772 -----------LLQIGA---S--LIESNEFLIHVLNKFNLINWVYVNFESNSLKNPEEES 815
L + + S L+ +++ + L K N V+F + ++ P
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN------VSFNAKDIQIP---- 458
Query: 816 IRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPD 875
+ T G RV S I + I+ + P+ E
Sbjct: 459 VYDTF-------------DGSDL-----RVLSGS-ISERIVDCIIRLPV-KWE--TTTQF 496
Query: 876 DSNH--------ETGLERVINEIADFKKPTQSSGKGV 904
+ H +GL + + D G GV
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKD--------GTGV 525
Score = 54.3 bits (130), Expect = 3e-07
Identities = 117/741 (15%), Positives = 194/741 (26%), Gaps = 330/741 (44%)
Query: 674 VSTQP---------VSIHLPLSRFLAGLYIHL----DKF--NLSFYSRELLSDNCFFSRL 718
ST+P + +P + ++F L + +D+
Sbjct: 4 YSTRPLTLSHGSLEHVLLVP-----TASFFIASQLQEQFNKILPEPTEGFAADD------ 52
Query: 719 TPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQI--YFYHNVKCRNEMLDKDIILLQIG 776
EP + L+ + Y V+ ++ L +
Sbjct: 53 ------EP-------TTPAE----------LVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 777 ASLIESNEFL----IHVLNKFNLINWVYVNFESNSLKNPEEESIRQTISLVEEFLHLLIL 832
E+ +L IH L + L + ++ +T L++ ++
Sbjct: 90 E--FENC-YLEGNDIHAL--------------AAKLLQENDTTLVKTKELIKNYIT---- 128
Query: 833 ITGERYMPGIGRVASDDCIKKEIIQQLCIKPLPHSELNKALPDDSNHETGLERVINEIAD 892
R+ + K+ +S L +A+ + L +A
Sbjct: 129 ----------ARIMAKRPFDKK----------SNSALFRAVGEG---NAQL------VAI 159
Query: 893 FKKPTQSSGKG---VY--ELKPEFYDGYNVF---FYHYSRE---EVSRSEEEQRKRRKAA 941
F G+G Y EL+ + Y Y+V +S E E+ R+ + K
Sbjct: 160 F------GGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 942 KE----LECVPPPKLPP----LLPPFSM----VTNLLQCDVMLHVMSLVLERSINLRAR- 988
LE P P L P S V L V ++ LR+
Sbjct: 213 LNILEWLE--NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF---TPGELRSYL 267
Query: 989 -----------------------SFSEAQLHKILHL---IGYALHEEESGNYQFFTFTDR 1022
SF + + K + + IG +E Y +
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVS-VRKAITVLFFIGVRCYEA----YPNTSLPPS 322
Query: 1023 AEKWNIEQHIEELCSSP----------RVEAH------KVPQDRKPLEINRLINLPDDYS 1066
+ ++E E SP +V+ + +P ++ +EI+ L+N
Sbjct: 323 ILEDSLEN--NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-VEIS-LVNGAK--- 375
Query: 1067 ELINTV------SLFTCPNSDREDSRNPALCLICGDMLCSQS---YCCQTELFFKMS--- 1114
N V SL+ N L QS + + +L F
Sbjct: 376 ---NLVVSGPPQSLY---------GLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLP 422
Query: 1115 VGACTYHSHF-CGAGVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQG--LRRGN 1171
V + +HSH A + + + V F A P Y +T G LR
Sbjct: 423 VAS-PFHSHLLVPASDLINKDLVKNNVSFNAKD----IQIPVY-----DTFDGSDLRV-- 470
Query: 1172 PLRLCKERYKKLQRLWLSHGIHEEISRSI-------EASHNLITTHCAGLLDKPGVIKLM 1224
LS I E I I E + TH
Sbjct: 471 ----------------LSGSISERIVDCIIRLPVKWETTTQFKATH-------------- 500
Query: 1225 KKWKSNEKLKVKTERDKSIAKSVLAAFVQQSTVIGAVVNALDFGSG-SSGSSP------- 1276
LDFG G +SG
Sbjct: 501 ---------------------------------------ILDFGPGGASGLGVLTHRNKD 521
Query: 1277 ---SQVIKF--------DDYG 1286
+VI DDYG
Sbjct: 522 GTGVRVIVAGTLDINPDDDYG 542
Score = 38.1 bits (88), Expect = 0.026
Identities = 44/252 (17%), Positives = 84/252 (33%), Gaps = 73/252 (28%)
Query: 1128 GVGMFLR-----VRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLC------ 1176
G+GM L ++ ++ NR + D YG + + NP+ L
Sbjct: 1630 GMGMDLYKTSKAAQD---VW----NRADNH---FKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 1177 -----KERYKKL--QRLWLSHGIHEEISRSI-EASHNLITTHCAGLLDK-----PGVIKL 1223
+E Y + + + E+I + I E S + GLL P + L
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-ALTL 1738
Query: 1224 MKK--WKSNEKLKVKTERDKSIAKSVLA--------AFVQQSTVIGAVVNALDFGSGSS- 1272
M+K + E LK + A + A A ++ + + S
Sbjct: 1739 MEKAAF---EDLK---SKGLIPADATFAGHSLGEYAALA-------SLADVMSIESLVEV 1785
Query: 1273 ----GSSPSQVIKFDDYGETDQGLRRGNPLR----LCKERYKKLQRLWLSHGIHEEISRS 1324
G + + D+ G ++ G+ NP R +E + + + +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-----RVGKRTGWL 1840
Query: 1325 IE-ASHNLITTQ 1335
+E ++N+ Q
Sbjct: 1841 VEIVNYNVENQQ 1852
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 3e-07
Identities = 88/657 (13%), Positives = 189/657 (28%), Gaps = 180/657 (27%)
Query: 311 HTFEQVINTLVRSLKCSQKDAIE-----FVTNIDREGRAAVKCSNFSHCEDLKSEIERFT 365
H ++ + KD + FV N D +D+ I
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFD-----------CKDVQDMPKSI---- 45
Query: 366 SRHGNRPIKVAVVNSVVIA-HQIYAMRLLTWLQKVLGYSESFRMLFSEVCLEEKAPDLSI 424
+ ++ ++++ + L W +L E F
Sbjct: 46 -------LSKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQKF-------------- 82
Query: 425 VEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSF----ARVFTKKYGSIMKDFIK-- 478
VE +L + + + + + + S M Y ++ +VF K S ++ ++K
Sbjct: 83 VEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 479 ----DDHDHSFSI-----GS------------------MSVQIYTVPTLAHY------LI 505
+ + GS M +I+ + L + L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLE 200
Query: 506 AHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQYI--LYDLRYLLGVPPDT 563
+ +L+ + + S N K ++ + K Y L L +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-------NV 253
Query: 564 WTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITLF 623
+ F + LL + Q D ++ H+ + + L
Sbjct: 254 QNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKS----LL 307
Query: 624 LQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGE-VREVGDHSVACLHYDVSTQPVSIH 682
L++ + L + T + + E +R+ H +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS-------IIAESIRDGLATWDNWKHVNCDK------ 354
Query: 683 LPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFF--SRLTPEQLIEPVL-------RTQVM 733
L+ + L+ R++ F S P L+ ++ V+
Sbjct: 355 --LTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVV 407
Query: 734 ISQVHAGMWRRNGYSLLNQ-----IYFYHNVKCRNEMLDKDIILLQIGASLIESNEFLIH 788
++++H YSL+ + + + + + NE+ +H
Sbjct: 408 VNKLHK-------YSLVEKQPKESTISIPS--------------IYLELKVKLENEYALH 446
Query: 789 --VLNKFNLINWVYVNFESNSLKNPEEES-IRQTISLVEEFLHLLILITGERY--MPGIG 843
+++ +N+ F+S+ L P + I HL + ER +
Sbjct: 447 RSIVDHYNIPK----TFDSDDLIPPYLDQYFYSHIG-----HHLKNIEHPERMTLFRMV- 496
Query: 844 RVASDDCIKKEIIQQLCIKPLPHSELNKALPDD-------SNHETGLERVINEIADF 893
++++I S LN L +++ ER++N I DF
Sbjct: 497 -FLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAILDF 551
Score = 53.3 bits (127), Expect = 5e-07
Identities = 64/417 (15%), Positives = 118/417 (28%), Gaps = 104/417 (24%)
Query: 952 LPPLLPPFSMVTNLLQC----DVMLHVMS------LVLERSINLRARSFSEAQLHKILHL 1001
L F V N C D+ ++S +++ + L K +
Sbjct: 22 LSVFEDAF--VDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 1002 IGYALHEEESGNYQFFTFTDRAEKWNIEQH----IEELCSSPRVEAHKVPQDRKPLEINR 1057
+ + E NY+F EQ + + R + Q ++R
Sbjct: 79 VQKFVEEVLRINYKFL-----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 1058 LINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDML-CSQSYCCQTELFFKMSVG 1116
Y +L + E + LI G +L +++ +++
Sbjct: 134 ----LQPYLKLRQAL---------LELRPAKNV-LIDG-VLGSGKTW---------VALD 169
Query: 1117 ACTYHSHFCGAGVGMF-LRVREC--EVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPL 1173
C + C +F L ++ C L + + P + + L
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KL 225
Query: 1174 RLCKERYKKLQRLWLSHGIHEEISRSIEASHNLITTHCAGLLD---KPGVIKLMKKWKSN 1230
R+ +L+RL S + L+ L
Sbjct: 226 RI-HSIQAELRRLLKSK----PYENCL-----LV-------LLNVQNAKAWNAFN----- 263
Query: 1231 EKLKVK---TERDKSIAKSVLAAFVQQSTVIGAVVNALDFGSGSSGSSPSQVIK-FDDY- 1285
L K T R K + + AA ++ S +P +V Y
Sbjct: 264 --LSCKILLTTRFKQVTDFLSAATTTHISLD----------HHSMTLTPDEVKSLLLKYL 311
Query: 1286 GETDQGLRR----GNPLR--LCKERYKKLQRLW--LSHGIHEEISRSIEASHNLITT 1334
Q L R NP R + E + W H ++++ IE+S N++
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Score = 49.9 bits (118), Expect = 6e-06
Identities = 93/629 (14%), Positives = 175/629 (27%), Gaps = 214/629 (34%)
Query: 707 ELLSDNCFF--SRLTPEQLIEPVLRTQVMISQVHAGMWRRNGYSLLNQIYFYHNVKCRNE 764
E+L N F S + EQ +P + T++ I Q ++ N Q++ +NV R +
Sbjct: 85 EVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQ-RDRLYNDN------QVFAKYNV-SRLQ 135
Query: 765 MLDKDIILLQIGASLIESNEFL-IH-------------------VLNKFNL-INWVYVNF 803
K L+ + + + I V K + I W+
Sbjct: 136 PYLK----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---- 187
Query: 804 ESNSLKNPEEESIRQTISLVEEFLHLLI--LITGERYMPGIGRVASDDCIKKEIIQQLCI 861
+LKN S + ++++ L+ + + + I ++ I+ E+ + L
Sbjct: 188 ---NLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHS-IQAELRRLLKS 240
Query: 862 KPLPHSELNKALPDDSNHETGLERVINEIADFKKPT--QSSGKGVYELKPEFYDGYNVFF 919
KP + L L + + + N + + K V + F
Sbjct: 241 KPYENCLL--VL-LNVQNA----KAWNAF-NLSCKILLTTRFKQVTD----FLSAATT-- 286
Query: 920 YHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVL 979
H S + S + + K L+C P LP + +S+
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREV-----------LTTNPRRLSI-- 332
Query: 980 ERSINLRARSFSEAQLHKILHLIGYALHEEESGNYQFFTFTDRAEKW---NIEQHIEELC 1036
I ++ + + W N ++ +
Sbjct: 333 ----------------------IAESIRD----------GLATWDNWKHVNCDKLTTIIE 360
Query: 1037 SSPRVEAHKVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPA--LCLIC 1094
SS + LE P +Y ++ + +S+F + P L LI
Sbjct: 361 SS--LNV---------LE-------PAEYRKMFDRLSVF------PPSAHIPTILLSLIW 396
Query: 1095 GDMLCSQSYCCQ--TELFFKMSV-------GACTYHSHF------CGAGVGMFLRVRECE 1139
D+ K S+ + S + + + +
Sbjct: 397 FDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 1140 VLFLASPNRGCFMSPPYLDDY--------------GETDQGLRR--------GNPLRLCK 1177
+ + PPYLD Y E R +R
Sbjct: 454 NIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 1178 ----------------ERYKKLQRLWLSHGIHEEISRSIE-----ASHNLITTHCAGLLD 1216
+ YK + + +E + +I NLI + LL
Sbjct: 512 TAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 1217 KPGVIKLMKKWKSNEKLKVKTERDKSIAK 1245
I LM E + E K + +
Sbjct: 570 ----IALM-----AEDEAIFEEAHKQVQR 589
Score = 49.5 bits (117), Expect = 9e-06
Identities = 112/810 (13%), Positives = 210/810 (25%), Gaps = 303/810 (37%)
Query: 80 FDENKVQ----NILFDSLEEFICD-------GSPEEIFQK--VSQMDNPPSVCGRVFKMG 126
F+ + Q +IL + F+ + P+ I K + + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL- 67
Query: 127 EPTYNCRECGMDATCVLCVDCFKKSTHR-NHKYKMGTSNAGGCCDCGDVEAWKKEPYCDV 185
+ + V F + R N+K+ M K E
Sbjct: 68 ---FWTLLSKQEEM----VQKFVEEVLRINYKFLM--------------SPIKTEQ---- 102
Query: 186 HIIGTQKRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPLDLKVP-PEDVLQ 244
Q + +T Y Q + V + L+
Sbjct: 103 -------------------RQPSMMT----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 245 ITYSHNSDNFCTVLYNDEFHTF----------EQLLTT----DYGPSIPLDLKV------ 284
+ L + + Y +D K+
Sbjct: 140 LR---------QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 285 ---PPEDVLQI---TYSHNSDNFCTVLYNDE--FHTFEQVINTLVRSLKCSQ-KDAIEFV 335
PE VL++ N+ + + + L R LK ++ + +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 336 TNI-DREGRAAVKCSNFSHCEDLKSEIERFTSRHGNRPIKVAVVNSVVIAHQIYAMRLLT 394
N+ + + A N C+ L T+R V + + A + L
Sbjct: 251 LNVQNAK---AWNAFNL-SCKIL------LTTRF------KQVTDFLSAATTTH--ISLD 292
Query: 395 WLQKVLGYSESFRMLFSEVCLEEKAPDL--SIVEGILVKDSQLWKAARLHWHRLFISGML 452
L E + L + L+ + DL ++ + S + ++ R
Sbjct: 293 HHSMTLTPDEV-KSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------ 344
Query: 453 MEYESKKSFARVFTKKYGSIMKDFIK--DDHDH-----SFSIGSMSVQIYTVPTLAHYLI 505
+ + V K +I++ + + ++ S+ S I P
Sbjct: 345 -DN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---P------- 388
Query: 506 AHEDVLFILLSTFISECTRK-LNK--KKKLEFERNIPNASFKRAQYILYDLRYLLGVPPD 562
+L ++ I +NK K L ++ K + + +
Sbjct: 389 --TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP------KESTISIPSI--------- 431
Query: 563 TWTPELRKGFAHGLQFLLDLLSYMQGMDEVTRQVGQHMEYEPEWESAFNLHIKLAPVITL 622
L+L +E E LH
Sbjct: 432 ----------------YLELK--------------VKLENEYA------LHRS------- 448
Query: 623 FLQWCGTDKEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIH 682
++ Y KT +D DL + H + + H
Sbjct: 449 -----------IVDHYNIP-KTFDSD---DLIPPYLDQYFYSH----IGH---------H 480
Query: 683 LPLSRFLAGLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGM- 741
L H ++ L F R + D F +E +R H
Sbjct: 481 LKNIE-------HPERMTL-F--RMVFLDFRF---------LEQKIR--------HDSTA 513
Query: 742 WRRNGY--SLLNQIYFYHNVKCRN----EMLDKDII--LLQIGASLIESNEF-LIHVLNK 792
W +G + L Q+ FY C N E L I+ L +I +LI S L+ +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI--- 570
Query: 793 FNLINWVYVNFESNSLKNPE----EESIRQ 818
+L + EE+ +Q
Sbjct: 571 --------------ALMAEDEAIFEEAHKQ 586
Score = 46.4 bits (109), Expect = 7e-05
Identities = 47/352 (13%), Positives = 100/352 (28%), Gaps = 106/352 (30%)
Query: 38 VNDWK--QKFQQG--TL------SITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQN 87
V + K F L +TDF + + + ++V++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDF-------LSAATTTHISLDHHSMTLTPDEVKS 305
Query: 88 IL-------FDSLEEFICDGSPEEIFQKVSQMDNPPSVCGRVFKMGEPT------YNCRE 134
+L L + +P + S+ + G T NC +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL-----------SIIAESIRDGLATWDNWKHVNCDK 354
Query: 135 CGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCCDCG----DVE--------AWKKEPY 182
+ ++ + + +R + W
Sbjct: 355 --LTTIIESSLNVLEPAEYRKM-FD----------RLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 183 CDVHIIGTQ--------KRHESGSILPPDLAQRARLTFSSVLRYAYQLLTTDYGPSIPL- 233
DV ++ + K+ + +I P + ++ + ++ + Y +IP
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHY--NIPKT 458
Query: 234 ----DLKVPPEDVLQITYSHNSDNFCTVLYNDEFHTFEQLLTTDYG--------PSIPLD 281
DL P D Q YSH + + + + F + D+ S +
Sbjct: 459 FDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWN 515
Query: 282 LKVPPEDVLQ--ITY-SHNSDNFCTVLYNDEFHTFEQVINTLVRSL-KCSQK 329
+ LQ Y + D ND +E+++N ++ L K +
Sbjct: 516 ASGSILNTLQQLKFYKPYICD-------NDP--KYERLVNAILDFLPKIEEN 558
Score = 42.5 bits (99), Expect = 0.001
Identities = 68/503 (13%), Positives = 141/503 (28%), Gaps = 163/503 (32%)
Query: 802 NFESNSLKNPEEESIRQTISLVEEFLHLLILITGERYMPGIGRVASDDCIKKE---IIQQ 858
+ + L E + I + V L L + + + ++ ++ ++
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 859 LCIKPLPHSELNKALPDDSNHETGLERVINEIADFKKPTQSSGKGVYELKPEFYDGYNVF 918
+ +E + + +R+ N+ F K YNV
Sbjct: 98 I------KTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-------------------YNV- 131
Query: 919 FYHYSREEVSRSEEEQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVM--- 975
SR + K R+A EL P +V++ +
Sbjct: 132 ----SR------LQPYLKLRQALLELR--PAK------------------NVLIDGVLGS 161
Query: 976 ---SLVLE--RS-------------INLRARSFSEA---QLHKILHLIGYALHEEESGNY 1014
+ L+ S +NL+ + E L K+L+ I +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1015 QFFTFTDRAEKWNIEQHIEELCSSPRVEAHKVPQDRKPLEINRLINLPDD--YSELINTV 1072
NI+ I + + R + N L+ L + ++ N
Sbjct: 222 ------------NIKLRIHSIQAELR---RLLKSKPYE---NCLLVL-LNVQNAKAWNAF 262
Query: 1073 S-----LFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGA 1127
+ L T +R + D L + + T + T
Sbjct: 263 NLSCKILLT--------TRFKQVT----DFLSAATT---THISLDHHSMTLTP-----DE 302
Query: 1128 GVGMFLRVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKLQRLW 1187
+ L+ +C L P +P L E R + +K +
Sbjct: 303 VKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAE----SIRDGLATW--DNWKHVN--- 351
Query: 1188 LSHGIHEEISRSIEASHNLITTH--------CAGLLDK-----PGVIKLMKKWKSNEKLK 1234
++++ IE+S N++ + + ++ L+ W K
Sbjct: 352 -----CDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLI--WFDVIKSD 403
Query: 1235 VKTERDKSIAKSVLAAFVQQSTV 1257
V +K S++ ++ST+
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTI 426
Score = 34.4 bits (78), Expect = 0.33
Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 44/187 (23%)
Query: 1187 WLSHGIHEE------ISRSIEASHNLITTHCAGLLDKPGVIKLMKKWKSNEKLKVKTERD 1240
+L I E ++R + + + K V +L K + L +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALL-ELRPA 150
Query: 1241 KSIA--------KSVLAAFVQQSTVIGAVVNALDFG----SGSSGSSPSQVIKFD----- 1283
K++ K+ +A V S V +DF + + +SP V++
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 1284 --DYGETDQGLRRGNPLRLCKERYKKLQRLWLSHGIHEE---I------SRSIEA----S 1328
D T + N +L+RL S +E + +++ A
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSC 266
Query: 1329 HNLITTQ 1335
L+TT+
Sbjct: 267 KILLTTR 273
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
a.4.5.81
Length = 104
Score = 44.5 bits (105), Expect = 1e-05
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 851 IKKEIIQQLCIKPLPHSELNKALPDDSNHE---TGLERVINEIADFKKPTQSSGKGVYEL 907
+ ++ L ++P +EL L D + L+ ++ ++A+ G L
Sbjct: 13 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKD-----GTCTL 67
Query: 908 KPEFYDGYNVFFYHYSREEVSRSEEEQRKRRK 939
+ Y + YS + + ++ RK
Sbjct: 68 QDCMYKDVQKDWPGYSEGD--QQLLKRVLVRK 97
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 35.2 bits (81), Expect = 0.018
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 851 IKKEIIQQLCIKPLPHSELNKALPDDSNHE---TGLERVINEIADFKKPTQSSGKGVYEL 907
+ +I L +K EL L D ++ L ++ ++A+ +S Y L
Sbjct: 14 YRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANL-----NSKDLSYTL 68
Query: 908 KPEFYDGYNVFFYHYSREEVSRSEEEQRKRRK 939
K + + YS + R E RK
Sbjct: 69 KDYVFKELQRDWPGYSEID--RRSLESVLSRK 98
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone,
adaptor protein, DNA condensation, iron, CLPS, CLPA,
cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia
coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C*
2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Length = 108
Score = 35.1 bits (81), Expect = 0.023
Identities = 11/69 (15%), Positives = 28/69 (40%)
Query: 301 FCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSE 360
+ +L ND++ E VI+ L + + A + + + +G+A E +
Sbjct: 28 YKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAM 87
Query: 361 IERFTSRHG 369
+ ++ +
Sbjct: 88 VNKYARENE 96
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor,
hydrolase; HET: SME; 1.40A {Escherichia coli} PDB:
3o1f_B* 3o2o_A
Length = 81
Score = 34.5 bits (80), Expect = 0.026
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 301 FCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAV 346
+ +L ND++ E VI+ L + + A + + + +G+A
Sbjct: 3 YKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAIC 48
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor,
protein-peptide complex, peptide binding protein; 1.15A
{Caulobacter vibrioides} PDB: 3g19_A 3gq0_A 3gq1_A
3gw1_A 3g1b_A 3g3p_A*
Length = 85
Score = 33.8 bits (78), Expect = 0.045
Identities = 13/69 (18%), Positives = 29/69 (42%)
Query: 301 FCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSE 360
+ ++ ND++ E V+ L R S++DA + ++ + G + E ++
Sbjct: 7 YRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQ 66
Query: 361 IERFTSRHG 369
+ RH
Sbjct: 67 VIDSARRHQ 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.088
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 1024 EKWNIEQHIEELCSSPRVEAHKVPQDRKP-LEINRLI 1059
EK Q +++L +S ++ A D P L I +
Sbjct: 18 EK----QALKKLQASLKLYA---D-DSAPALAIKATM 46
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 34.5 bits (79), Expect = 0.29
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 933 EQRKRRKAAKELECVPPPKLPPLLPPFSMVTNLLQCDVMLHVMSLVLERSINLRARSFSE 992
R AK L K F + L + H +V+ + I +
Sbjct: 491 ALRMAVTCAKNLS-----KFENQEQGFQELLADLVEAAIAHCQLIVVSKFIAKLEQDIGG 545
Query: 993 AQLHKILHLIG--YALH--EEESGNYQFFTFTDRAEKWNIEQHIEELCSSPRVEA 1043
+ K L+ + YAL+ + G++ + + L + R A
Sbjct: 546 KGVKKQLNNLCYIYALYLLHKHLGDFLSTNCITPKQASLANDQLRSLYTQVRPNA 600
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein-prote complex; 1.50A {Dengue virus 2} SCOP:
b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Length = 185
Score = 32.6 bits (74), Expect = 0.50
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 1222 KLMKKWKSNEKLKVKT-ERDKSIA--KSVLAAFVQQSTVIGAVVNALDFGSGSSGS 1274
KL +WK E+++V E K+ ++ F + IGAV +LDF G+SGS
Sbjct: 84 KLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAV--SLDFSPGTSGS 137
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding
protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1
g.3.1.1 g.3.1.1
Length = 126
Score = 29.8 bits (66), Expect = 2.7
Identities = 11/62 (17%), Positives = 12/62 (19%), Gaps = 7/62 (11%)
Query: 1077 CPNSDREDSRNPALCLICGDMLCSQSYCCQTELFFKMSVGACTYHSHFCGAGVGMFLRVR 1136
C + G C CC G C CG G
Sbjct: 32 CGKGCQSQCDYNRCGKEFGGKECHDELCCSQ-------YGWCGNSDGHCGEGCQSQCSYW 84
Query: 1137 EC 1138
C
Sbjct: 85 RC 86
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 30.9 bits (70), Expect = 3.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 50 LSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKV 109
+ + +E WKV V P + + D EN L D+ + + DGS EI +
Sbjct: 137 FGMKEMRESWKVHVAPEDRPTQQMNDWDL---ENLFSVTLRDAGQIALIDGSTYEIKTVL 193
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping;
HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP:
a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A*
1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Length = 543
Score = 30.9 bits (70), Expect = 3.5
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 50 LSITDFKEHWKVWVPHLLSPEPKSSCLDWSFDENKVQNILFDSLEEFICDGSPEEIFQKV 109
+ + +E WKV V P+ + + LD N L D+ + + DG ++I + +
Sbjct: 119 WGMPEMRESWKVLVKPEDRPKKQLNDLDL---PNLFSVTLRDAGQIALVDGDSKKIVKVI 175
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR
{Mus musculus} SCOP: g.44.1.6
Length = 52
Score = 27.4 bits (61), Expect = 3.7
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 130 YNCREC-GMDATCVLCVDCFKKSTHRNHKYKMGT 162
++C C D LC++C+ +H + K G
Sbjct: 20 WHCTVCEDYD----LCINCYNTKSHTHKMVKWGL 49
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation, ligase,
metal-binding; NMR {Homo sapiens}
Length = 101
Score = 28.8 bits (64), Expect = 4.1
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 130 YNCRECGMDATCVLCVDCFKKSTHRNHKYK 159
C ++C C HR+H+
Sbjct: 72 MYCVTDDQ----LICALCKLVGRHRDHQVA 97
>3p6j_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; 1.35A {Synthetic}
Length = 142
Score = 29.3 bits (65), Expect = 4.5
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 17/119 (14%)
Query: 631 KEILIKAYRATMKTLCADEGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHLPLSRFLA 690
++ T + L + G V D S + + +S + L L
Sbjct: 30 NGEVLLKSTETGQYLRINPD------GTVDGTRDRSDTHIQFQISPEGNGEVL-LKSTET 82
Query: 691 GLYIHLDKFNLSFYSRELLSDNCFFSRLTPEQLIEPVLRTQVMISQVHAGMW---RRNG 746
G Y+ ++ +R+ + F +V++ G + +G
Sbjct: 83 GQYLRINPDGTVDGTRDRSDTHIQFQISPEG-------NGEVLLKSTETGQYLRINPDG 134
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 30.1 bits (69), Expect = 5.9
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 649 EGIDLGQLGEVREVGDHSVACLHYDVSTQPVSIHL-PLSRFLAGLYIHLDKF---NL 701
E G L R G A L Y TQ ++ L P + G ++ L + L
Sbjct: 208 EPEGEGPLALRRARG----ALLAYAQRTQGGALSLQPFRFYDPGAFMRLPEATLRAL 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 29.0 bits (66), Expect = 8.4
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 903 GVYELKPEFYDGYNVFFYHYSREEVSRSEEEQRKRRKAAKELE 945
+ L+ + + VF + +E ++ +K + L+
Sbjct: 107 ALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQ 149
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI-
protein structure initiative, joint center for
structural G JCSG; 1.65A {Listeria innocua} SCOP:
d.369.1.1
Length = 160
Score = 28.5 bits (63), Expect = 8.8
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 70 EPKSSCLDWSFDENKVQNILFDSLEEFICD 99
EP + SF +N + ++ +S EF+ +
Sbjct: 121 EPVIVETNLSFKDNTEKKVVANSFGEFLLE 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.421
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,241,122
Number of extensions: 1308733
Number of successful extensions: 3046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3012
Number of HSP's successfully gapped: 53
Length of query: 1363
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1258
Effective length of database: 3,770,088
Effective search space: 4742770704
Effective search space used: 4742770704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.5 bits)