RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy353
(1363 letters)
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 91.7 bits (228), Expect = 8e-23
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 851 IKKEIIQQLCIKPLPHSELNKALPDDSNHETG---LERVINEIADFKKPTQSSGKGVYEL 907
+ ++ L ++P +EL L D + L+ ++ ++A+ G L
Sbjct: 6 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKD-----GTCTL 60
Query: 908 KPEFYDGYNVFFYHYSREEVSRSEEEQRKRRK 939
+ Y + YS + + ++ RK
Sbjct: 61 QDCMYKDVQKDWPGYSEGD--QQLLKRVLVRK 90
>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 60.5 bits (147), Expect = 6e-12
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 301 FCTVLYNDEFHTFEQVINTLVRSLKCSQKDAIEFVTNIDREGRAAVKCSNFSHCEDLKSE 360
+ +L ND++ E VI+ L + + A + + + +G+A E K
Sbjct: 9 YKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAE-TKVA 67
Query: 361 IERFTSRHGNRPIKVAV 377
+ +R P+ +
Sbjct: 68 MVNKYARENEHPLLCTL 84
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 29.3 bits (65), Expect = 0.82
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 110 SQMDNPPSVCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKYKMGTSNAGGCC 169
S M++ C F + + Y C+ CG C C + + G + C
Sbjct: 6 SGMESRCYGCAVKFTLFKKEYGCKNCG----RAFCNGC---LSFSALVPRAGNTQQKVCK 58
Query: 170 DC 171
C
Sbjct: 59 QC 60
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId:
11060]}
Length = 150
Score = 28.9 bits (65), Expect = 2.0
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 1222 KLMKKWKSNEKLKV---KTERDKSIAKSVLAAFVQQSTVIGAVVNALDFGSGSSGS 1274
KL +WK E+++V + ++ ++ F + IGAV +LDF G+SGS
Sbjct: 67 KLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAV--SLDFSPGTSGS 120
>d1hlma_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina
arenicola, also known as Molpadia arenicola [TaxId:
7698]}
Length = 158
Score = 28.9 bits (64), Expect = 2.5
Identities = 21/173 (12%), Positives = 54/173 (31%), Gaps = 31/173 (17%)
Query: 417 EKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVF-----TKKYGS 471
+ DL+ E L++ + W H F R+F ++
Sbjct: 7 QSVGDLTPAEKDLIRST--WDQLMTHRTGF----------VADVFIRIFHNDPTAQRKFP 54
Query: 472 IMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKK 531
M + S + + ++++ + T + E L ++ TR +K
Sbjct: 55 QMAGLSPAELRTSRQMHAHAIRVSALMTTYIDEMDTEV-----LPELLATLTRTHDK--- 106
Query: 532 LEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLS 584
++ ++ +L + + +T ++ +A + +L
Sbjct: 107 ----NHVGKKNYDLFGKVL--MEAIKAELGVGFTKQVHDAWAKTFAIVQGVLI 153
>d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina
arenicola, also known as Molpadia arenicola [TaxId:
7698]}
Length = 157
Score = 28.5 bits (63), Expect = 3.1
Identities = 16/173 (9%), Positives = 49/173 (28%), Gaps = 31/173 (17%)
Query: 417 EKAPDLSIVEGILVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVF-----TKKYGS 471
+ DL++ + +V+ + W + F R+F +
Sbjct: 7 QAQGDLTLAQKKIVRKT--WHQLMRNKTSF----------VTDVFIRIFAYDPSAQNKFP 54
Query: 472 IMKDFIKDDHDHSFSIGSMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKK 531
M S + + ++++ ++ + + + L ++ R +
Sbjct: 55 QMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDSDI-----LPELLATLARTHDL--- 106
Query: 532 LEFERNIPNASFKRAQYILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLS 584
+ + +L + L + + R +A + +L
Sbjct: 107 ----NKVGADHYNLFAKVL--MEALQAELGSDFNEKTRDAWAKAFSVVQAVLL 153
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 39
Score = 25.9 bits (57), Expect = 3.6
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 132 CRECGMDATCVLCVDCFKKSTHRNHKYK 159
C++ G + CV C H +H +
Sbjct: 14 CKDDGT----LSCVICRDSLKHASHNFL 37
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 26.6 bits (58), Expect = 3.8
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKS 151
CG+ F + ++CR+CG + C +C K+
Sbjct: 13 ACGKGFSVTVRRHHCRQCGN----IFCAECSAKN 42
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 26.9 bits (59), Expect = 4.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 118 VCGRVFKMGEPTYNCRECGMDATCVLCVDCFKKSTHRNHKY 158
C + G Y C EC LC +CF H +H +
Sbjct: 29 NCKQFPIEG-KCYKCTEC---IEYHLCQECFDSYCHLSHTF 65
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 26.0 bits (57), Expect = 4.4
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 130 YNCRECGMDATCVLCVDCFKKSTHRNHKYKMG 161
++C C LC++C+ +H + K G
Sbjct: 20 WHCTVC---EDYDLCINCYNTKSHTHKMVKWG 48
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
taurus) [TaxId: 9913]}
Length = 98
Score = 27.0 bits (60), Expect = 4.8
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 870 NKALPDDSNHETGLERVI-------NEIADFKKPTQSSG 901
+P D TGLER + + + P +SG
Sbjct: 3 GGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSG 41
>d1fsla_ a.1.1.2 (A:) Leghemoglobin {Soybean (Glycine max), isoform
A [TaxId: 3847]}
Length = 143
Score = 27.7 bits (61), Expect = 5.8
Identities = 16/156 (10%), Positives = 44/156 (28%), Gaps = 24/156 (15%)
Query: 429 LVKDSQLWKAARLHWHRLFISGMLMEYESKKSFARVFTKKYGSIMKDFIKDDHDHSFSIG 488
LV S ++A + + + S + + K + F + +
Sbjct: 10 LVSSS--FEAFKANIPQY----------SVVFYTSILEK-APAAKDLFSFLANGVDPTNP 56
Query: 489 SMSVQIYTVPTLAHYLIAHEDVLFILLSTFISECTRKLNKKKKLEFERNIPNASFKRAQY 548
++ + L +++ + ++ + + F +
Sbjct: 57 KLTGHAEKLFALVRDSAGQLKASGTVVA---------DAALGSVHAQKAVTDPQFVVVKE 107
Query: 549 ILYDLRYLLGVPPDTWTPELRKGFAHGLQFLLDLLS 584
L L+ + D W+ EL + + L +
Sbjct: 108 AL--LKTIKAAVGDKWSDELSRAWEVAYDELAAAIK 141
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 470
Score = 28.5 bits (62), Expect = 7.1
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 1134 RVRECEVLFLASPNRGCFMSPPYLDDYGETDQGLRRGNPLRLCKERYKKL-------QRL 1186
R +V+ L N G + + Q +RG+ R +RY L Q+L
Sbjct: 321 RSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKL 380
Query: 1187 WLSH 1190
++S+
Sbjct: 381 YISY 384
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 25.8 bits (57), Expect = 8.5
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 883 LERVINEIADF-KKPTQSSGKGVYELKPEF 911
L+ ++ EI K K +ELKPE+
Sbjct: 39 LKEILKEIGVQNVKGIH---KNTWELKPEY 65
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 255
Score = 27.5 bits (61), Expect = 9.4
Identities = 10/63 (15%), Positives = 14/63 (22%), Gaps = 6/63 (9%)
Query: 125 MGEPTYNCRECGM--DATCVLCVDCFKK-STHRNHKYKMGT---SNAGGCCDCGDVEAWK 178
E T G + T K GT ++AG +
Sbjct: 148 HAEATSEKEAMGWHLAGRVAAVIGTHTHVPTADTRILKGGTAYQTDAGFTGPHDSIIGSA 207
Query: 179 KEP 181
E
Sbjct: 208 IEG 210
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.421
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,289,283
Number of extensions: 263041
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 718
Number of HSP's successfully gapped: 29
Length of query: 1363
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1267
Effective length of database: 1,089,516
Effective search space: 1380416772
Effective search space used: 1380416772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)