BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3532
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YSZ|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Pid
Domain Of Fe65l And The C-Terminal Tail Peptide Of App
Length = 185
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 115 SFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMI 174
S PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA + +
Sbjct: 6 SGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATV 65
Query: 175 TIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALC 234
T+ S E ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++ +
Sbjct: 66 TVISEKNEE--EVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVS 123
Query: 235 KTIEAAC 241
+ ++AAC
Sbjct: 124 EAVQAAC 130
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 31 GVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIANTLRDIC 74
GVG+D FA++ D +R CHVF C+ A ++ ++ C
Sbjct: 89 GVGKD-VHTFAFIM-DTGNQRFECHVFWCEPNAANVSEAVQAAC 130
>pdb|1WGU|A Chain A, Solution Structure Of The C-Terminal Phosphotyrosine
Interaction Domain Of Apbb2 From Mouse
pdb|2ROZ|B Chain B, Structure Of The C-Terminal Pid Domain Of Fe65l1 Complexed
With The Cytoplasmic Tail Of App Reveals A Novel Peptide
Binding Mode
Length = 136
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 115 SFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMI 174
S PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA + +
Sbjct: 6 SGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATV 65
Query: 175 TIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALC 234
T+ S E ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++ +
Sbjct: 66 TVISEKNEE--EVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVS 123
Query: 235 KTIEAACK 242
+ ++AAC
Sbjct: 124 EAVQAACS 131
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 31 GVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIANTLRDICK 75
GVG+D FA++ D +R CHVF C+ A ++ ++ C
Sbjct: 89 GVGKDV-HTFAFI-MDTGNQRFECHVFWCEPNAANVSEAVQAACS 131
>pdb|2YT0|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Tail
Peptide Of App And The C-Terminal Pid Domain Of Fe65l
Length = 176
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 117 PTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITI 176
PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA + +T+
Sbjct: 54 PTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTV 113
Query: 177 HSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKT 236
S E ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++ + +
Sbjct: 114 ISEKNEE--EVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEA 171
Query: 237 IEAAC 241
++AAC
Sbjct: 172 VQAAC 176
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 31 GVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIANTLRDIC 74
GVG+D FA++ D +R CHVF C+ A ++ ++ C
Sbjct: 135 GVGKD-VHTFAFIM-DTGNQRFECHVFWCEPNAANVSEAVQAAC 176
>pdb|2YT1|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Tail
Peptide Of App And The C-Terminal Pid Domain Of Fe65l
Length = 185
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 117 PTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITI 176
PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA + +T+
Sbjct: 63 PTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTV 122
Query: 177 HSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKT 236
S E ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++ + +
Sbjct: 123 ISEKNEE--EVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEA 180
Query: 237 IEAAC 241
++AAC
Sbjct: 181 VQAAC 185
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 31 GVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIANTLRDIC 74
GVG+D FA++ D +R CHVF C+ A ++ ++ C
Sbjct: 144 GVGKD-VHTFAFIM-DTGNQRFECHVFWCEPNAANVSEAVQAAC 185
>pdb|3D8D|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain
pdb|3D8D|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain
pdb|3D8E|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|C Chain C, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|D Chain D, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8F|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|C Chain C, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|D Chain D, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
Length = 148
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGR--DFAYVARDRSTRRHMCHVFR 58
+ L++ LKL +P++ +L+ QPI +IRVWGVGRD+GR DFAYVARD+ T+ CHVFR
Sbjct: 59 LQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFR 118
Query: 59 CDMPARTIANTLRDICKKIMIE 80
C+ PA+ IA +L +IC KIM E
Sbjct: 119 CEAPAKNIATSLHEICSKIMAE 140
>pdb|3DXC|A Chain A, Crystal Structure Of The Intracellular Domain Of Human App
In Complex With Fe65-Ptb2
pdb|3DXC|C Chain C, Crystal Structure Of The Intracellular Domain Of Human App
In Complex With Fe65-Ptb2
pdb|3DXD|A Chain A, Crystal Structure Of The Intracellular Domain Of Human App
(T668e Mutant) In Complex With Fe65-Ptb2
pdb|3DXD|C Chain C, Crystal Structure Of The Intracellular Domain Of Human App
(T668e Mutant) In Complex With Fe65-Ptb2
pdb|3DXE|A Chain A, Crystal Structure Of The Intracellular Domain Of Human App
(T668a Mutant) In Complex With Fe65-Ptb2
pdb|3DXE|C Chain C, Crystal Structure Of The Intracellular Domain Of Human App
(T668a Mutant) In Complex With Fe65-Ptb2
Length = 140
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 118 TPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIH 177
P E + + YLG++ V+KP G+D++N A+++++S+ + W +++VAP+ +TI
Sbjct: 1 APKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTIL 60
Query: 178 STDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTI 237
E ++ ECRVRFLSFL +G +V AFIM F H+F EP++ +L + +
Sbjct: 61 HQQTEA---VLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAV 117
Query: 238 EAAC 241
+AAC
Sbjct: 118 QAAC 121
>pdb|2DYQ|A Chain A, Crystal Structure Of The C-terminal Phophotyrosine
Interaction Domain Of Human Apbb3
Length = 144
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 120 MEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIH-- 177
+ + + A Y G++ V+K G D+LN AI TL + ++ W ++V+ S+ T H
Sbjct: 11 VSQAAQKYEALYXGTLPVTKAXGXDVLNEAIGTLTARGDRNAWVPTXLSVSDSLXTAHPI 70
Query: 178 ----STDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGAL 233
ST+EE + +C VR ++F+G+G + I + F F +P +G L
Sbjct: 71 QAEASTEEEP----LWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGL 126
Query: 234 CKTIEAAC 241
+ ++AAC
Sbjct: 127 SEAVQAAC 134
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide,
Nmr, Ensemble Of Structures
Length = 160
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D E ++ Q I + R++ R F+Y+ RD +TRR MCH F
Sbjct: 76 GLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGF 126
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
Nak Peptide
Length = 135
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D E ++ Q I + R++ R F+Y+ RD +TRR MCH F
Sbjct: 61 GLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGF 111
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
Of Mouse Numb Protein
Length = 156
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + ++ Q I + R+ R F+Y+ RD +TRR +CH F
Sbjct: 72 GLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCF 122
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + +L Q I + R+ + F+Y+ RD +TRR +CH F
Sbjct: 88 GLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCF 138
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+ + +K D N ++ I I ++ FAY+ +D + H CHVF
Sbjct: 66 LSVSAKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVF 122
>pdb|2EJ8|A Chain A, Crystal Structure Of Appl1 Ptb Domain At 1.8a
pdb|2EJ8|B Chain B, Crystal Structure Of Appl1 Ptb Domain At 1.8a
Length = 160
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRH-----MCHVFRCDMP 62
LKL DP+ T P+ + ++ ++N R F +V R S R +C++F +
Sbjct: 68 LKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNE 127
Query: 63 ARTIANTLRDICKKIMIERSL 83
I +++ + K+I + L
Sbjct: 128 GEKICDSV-GLAKQIALHAEL 147
>pdb|2ELA|A Chain A, Crystal Structure Of The Ptb Domain Of Human Appl1
pdb|2ELA|B Chain B, Crystal Structure Of The Ptb Domain Of Human Appl1
Length = 175
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRH-----MCHVFRCDMP 62
LKL DP+ T P+ + ++ ++N R F +V R S R +C++F +
Sbjct: 81 LKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNE 140
Query: 63 ARTIANTLRDICKKIMIERSL 83
I +++ + K+I + L
Sbjct: 141 GEKICDSV-GLAKQIALHAEL 160
>pdb|1QGH|A Chain A, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|B Chain B, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|C Chain C, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|D Chain D, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|E Chain E, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|F Chain F, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|G Chain G, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|H Chain H, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|I Chain I, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|J Chain J, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|K Chain K, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site.
pdb|1QGH|L Chain L, The X-Ray Structure Of The Unusual Dodecameric Ferritin
From Listeria Innocua, Reveals A Novel Intersubunit Iron
Binding Site
Length = 156
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 109 PTERPQSFPTPMEE---PKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLW 162
P +P++ ME+ ++LR +Y I+++ G D+ N+ + +++ +H+W
Sbjct: 88 PYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIW 144
>pdb|2BK6|A Chain A, The X-Ray Crystal Structure Of The Listeria Innocua H31g
Dps Mutant.
pdb|2BK6|B Chain B, The X-Ray Crystal Structure Of The Listeria Innocua H31g
Dps Mutant.
pdb|2BK6|C Chain C, The X-Ray Crystal Structure Of The Listeria Innocua H31g
Dps Mutant.
pdb|2BK6|D Chain D, The X-Ray Crystal Structure Of The Listeria Innocua H31g
Dps Mutant.
pdb|2BK6|E Chain E, The X-Ray Crystal Structure Of The Listeria Innocua H31g
Dps Mutant.
pdb|2BK6|F Chain F, The X-Ray Crystal Structure Of The Listeria Innocua H31g
Dps Mutant
Length = 156
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 109 PTERPQSFPTPMEE---PKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLW 162
P +P++ ME+ ++LR +Y I+++ G D+ N+ + +++ +H+W
Sbjct: 88 PYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIW 144
>pdb|2BKC|A Chain A, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|B Chain B, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|C Chain C, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|D Chain D, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|E Chain E, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|F Chain F, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|G Chain G, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|H Chain H, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|I Chain I, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|J Chain J, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|K Chain K, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|L Chain L, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|M Chain M, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|N Chain N, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|O Chain O, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|P Chain P, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|Q Chain Q, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|R Chain R, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|S Chain S, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|T Chain T, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|U Chain U, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|V Chain V, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|X Chain X, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
pdb|2BKC|Y Chain Y, The X-Ray Structure Of The H43g Listeria Innocua Dps
Mutant
Length = 156
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 109 PTERPQSFPTPMEE---PKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLW 162
P +P++ ME+ ++LR +Y I+++ G D+ N+ + +++ +H+W
Sbjct: 88 PYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIW 144
>pdb|2BJY|A Chain A, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|B Chain B, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|C Chain C, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|D Chain D, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|E Chain E, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|F Chain F, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|G Chain G, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|H Chain H, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|I Chain I, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|J Chain J, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|K Chain K, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant.
pdb|2BJY|L Chain L, The X-Ray Crystal Structure Of Listeria Innocua Dps H31g-
H43g Mutant
Length = 156
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 109 PTERPQSFPTPMEE---PKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLW 162
P +P++ ME+ ++LR +Y I+++ G D+ N+ + +++ +H+W
Sbjct: 88 PYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIW 144
>pdb|2IY4|A Chain A, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|B Chain B, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|C Chain C, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|D Chain D, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|E Chain E, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|F Chain F, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|G Chain G, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|H Chain H, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|I Chain I, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|J Chain J, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|K Chain K, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|L Chain L, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|M Chain M, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|N Chain N, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|O Chain O, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|P Chain P, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|Q Chain Q, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|R Chain R, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|S Chain S, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|T Chain T, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|U Chain U, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|V Chain V, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|X Chain X, X-ray Structure Of Dps From Listeria Monocytogenes
pdb|2IY4|Y Chain Y, X-ray Structure Of Dps From Listeria Monocytogenes
Length = 156
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 109 PTERPQSFPTPMEE---PKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLW 162
P +P++ ME+ ++LR +Y I+++ G ++ N+ + +++ +H+W
Sbjct: 88 PYTKPKTMDQLMEDLVGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIW 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,703,972
Number of Sequences: 62578
Number of extensions: 246085
Number of successful extensions: 440
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 26
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)