BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3532
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92870|APBB2_HUMAN Amyloid beta A4 precursor protein-binding family B member 2 OS=Homo
sapiens GN=APBB2 PE=1 SV=3
Length = 758
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 147/239 (61%), Gaps = 10/239 (4%)
Query: 3 LDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMP 62
L+ L L DP + +VL++QPI +IRVWGVGRDNGRDFAYVARD+ TR CHVFRCD P
Sbjct: 474 LENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDFAYVARDKDTRILKCHVFRCDTP 533
Query: 63 ARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQSFPTPMEE 122
A+ IA +L +IC KIM ER A LA L NL FPTP E
Sbjct: 534 AKAIATSLHEICSKIMAERK-NAKALACSSLQERAN-------VNLDVPLQVDFPTPKTE 585
Query: 123 PKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEE 182
+ QYLG + V KP GMDILN+AI+ L+++ + W VN+ VA + +T+ S E+
Sbjct: 586 LVQKFHVQYLGMLPVDKPVGMDILNSAIENLMTSSNKEDWLSVNMNVADATVTVIS--EK 643
Query: 183 TGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIEAAC 241
++ ECRVRFLSF+G+G +V AFIM T F HVF EP++G + + ++AAC
Sbjct: 644 NEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAGNVSEAVQAAC 702
>sp|Q9DBR4|APBB2_MOUSE Amyloid beta A4 precursor protein-binding family B member 2 OS=Mus
musculus GN=Apbb2 PE=1 SV=2
Length = 760
Score = 204 bits (518), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 149/245 (60%), Gaps = 16/245 (6%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGR--DFAYVARDRSTRRHMCHVFR 58
+ L+ L L DP + +VL++QPI IRVWGVGRDNGR DFAYVARD+ TR CHVFR
Sbjct: 472 LSLENDMLSLVDPMDRSVLHSQPIVNIRVWGVGRDNGRERDFAYVARDKDTRILKCHVFR 531
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQ--SF 116
CD PA+ IA +L +IC KIM ER A LA L TN+ + P F
Sbjct: 532 CDTPAKAIATSLHEICSKIMAERK-NAKALACSSLQER---------TNMSLDVPLQVDF 581
Query: 117 PTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITI 176
PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA + +T+
Sbjct: 582 PTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTV 641
Query: 177 HSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKT 236
S E+ ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++ + +
Sbjct: 642 IS--EKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEA 699
Query: 237 IEAAC 241
++AAC
Sbjct: 700 VQAAC 704
>sp|Q9QXJ1|APBB1_MOUSE Amyloid beta A4 precursor protein-binding family B member 1 OS=Mus
musculus GN=Apbb1 PE=1 SV=3
Length = 710
Score = 190 bits (483), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 150/243 (61%), Gaps = 14/243 (5%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNG--RDFAYVARDRSTRRHMCHVFR 58
+ L++ LKL +P+N T+L+ QPI +IRVWGVGRD+G RDFAYVARD+ T+ CHVFR
Sbjct: 424 LQLEDETLKLVEPQNQTLLHAQPIVSIRVWGVGRDSGSNRDFAYVARDKLTQMLKCHVFR 483
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQSFPT 118
C+ PA+ IA +L +IC KIM ER + A+ ++ G + E FP
Sbjct: 484 CEAPAKNIATSLHEICSKIMSER-----RNARCLVNGLSLDHSKLVDVPFQVE----FPA 534
Query: 119 PMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHS 178
P E + + YLG++ V+KP G+D++N A+++++S+ + W +++VAP+ +TI
Sbjct: 535 PKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILH 594
Query: 179 TDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIE 238
E ++ ECRVRFLSFL +G +V AFIM F H+F EP++ +L + ++
Sbjct: 595 QQTE---AVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQ 651
Query: 239 AAC 241
AAC
Sbjct: 652 AAC 654
>sp|P46933|APBB1_RAT Amyloid beta A4 precursor protein-binding family B member 1
OS=Rattus norvegicus GN=Apbb1 PE=1 SV=3
Length = 711
Score = 190 bits (483), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 150/243 (61%), Gaps = 14/243 (5%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGR--DFAYVARDRSTRRHMCHVFR 58
+ L++ LKL +P+N T+L+ QPI +IRVWGVGRD+GR DFAYVARD+ T+ CHVFR
Sbjct: 425 LQLEDETLKLVEPQNQTLLHAQPIVSIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFR 484
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQSFPT 118
C+ PA+ IA +L +IC KIM ER + A+ ++ G + E FP
Sbjct: 485 CEAPAKNIATSLHEICSKIMSER-----RNARCLVNGLSLDHSKLVDVPFQVE----FPA 535
Query: 119 PMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHS 178
P E + + YLG++ V+KP G+D++N A+++++S+ + W +++VAP+ +TI
Sbjct: 536 PKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILH 595
Query: 179 TDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIE 238
E ++ ECRVRFLSFL +G +V AFIM F H+F EP++ +L + ++
Sbjct: 596 QQTE---AVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQ 652
Query: 239 AAC 241
AAC
Sbjct: 653 AAC 655
>sp|O00213|APBB1_HUMAN Amyloid beta A4 precursor protein-binding family B member 1 OS=Homo
sapiens GN=APBB1 PE=1 SV=2
Length = 710
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 14/243 (5%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGR--DFAYVARDRSTRRHMCHVFR 58
+ L++ LKL +P++ +L+ QPI +IRVWGVGRD+GR DFAYVARD+ T+ CHVFR
Sbjct: 424 LQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFR 483
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQSFPT 118
C+ PA+ IA +L +IC KIM ER + A+ ++ G + E FP
Sbjct: 484 CEAPAKNIATSLHEICSKIMAER-----RNARCLVNGLSLDHSKLVDVPFQVE----FPA 534
Query: 119 PMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHS 178
P E + + YLG++ V+KP G+D++N A+++++S+ + W +++VAP+ +TI
Sbjct: 535 PKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILH 594
Query: 179 TDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIE 238
E ++ ECRVRFLSFL +G +V AFIM F H+F EP++ +L + ++
Sbjct: 595 QQTE---AVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQ 651
Query: 239 AAC 241
AAC
Sbjct: 652 AAC 654
>sp|O35827|APBB3_RAT Amyloid beta A4 precursor protein-binding family B member 3
OS=Rattus norvegicus GN=Apbb3 PE=2 SV=1
Length = 504
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 128/251 (50%), Gaps = 25/251 (9%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD--FAYVARDRSTRRHMCHVFR 58
M L + A+ L +P + ++++ QP+ IRVWGVG GRD FA+VA D+ + CHVFR
Sbjct: 170 MVLKKDAMSLLNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVAGDKDSCMLKCHVFR 229
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQSFPT 118
CD+PA+ IA+ L+ +C +I+ ER G G P + P+ FP
Sbjct: 230 CDVPAKAIASRLQGLCAQILSERV------------GLSGEAACCSPDPI---SPEDFPR 274
Query: 119 PME------EPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPS 172
+E + + A Y+G + V+K GMD+LN AI TL + W ++V+ S
Sbjct: 275 QVELLDAVSQAAQKYEALYMGILPVTKAMGMDVLNEAIGTLTGRGDRKTWVPAMLSVSDS 334
Query: 173 MITIHSTDEETGGTL--MAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSS 230
++T H E G + +C VR ++F+G+GH+ I F F +P +
Sbjct: 335 LMTAHPIQAEAGAEEEPLWQCPVRLVTFIGVGHDPHTFGLIADLGCQSFQCAAFWCQPHA 394
Query: 231 GALCKTIEAAC 241
G L + ++AAC
Sbjct: 395 GGLSEAVQAAC 405
>sp|Q8R1C9|APBB3_MOUSE Amyloid beta A4 precursor protein-binding family B member 3 OS=Mus
musculus GN=Apbb3 PE=2 SV=1
Length = 486
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 127/251 (50%), Gaps = 25/251 (9%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD--FAYVARDRSTRRHMCHVFR 58
M L + A+ L +P + ++++ QP+ IRVWGVG GRD FA+VA D+ + CHVF
Sbjct: 172 MILKKDAMSLLNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVAGDKDSCMLKCHVFH 231
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQSFPT 118
CD+PA+ IA+ L+ +C +I+ ER G G P + P+ P
Sbjct: 232 CDVPAKAIASALQGLCAQILSERV------------GVSGEAACCSPDPI---SPEDLPR 276
Query: 119 PME------EPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPS 172
+E + + A Y+G + V+K GMD+LN AI TL + + W ++V+ S
Sbjct: 277 QVELLDAVSQAAQKYEALYMGILPVTKAMGMDVLNEAIGTLTARGDRKTWVPAMLSVSDS 336
Query: 173 MITIHSTDEETGGTL--MAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSS 230
++T H+ E G + +C VR ++F+G+G + I F F EP +
Sbjct: 337 LMTAHAIQAEAGAEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGCQSFQCAAFWCEPHA 396
Query: 231 GALCKTIEAAC 241
G L + ++AAC
Sbjct: 397 GGLSEAVQAAC 407
>sp|O95704|APBB3_HUMAN Amyloid beta A4 precursor protein-binding family B member 3 OS=Homo
sapiens GN=APBB3 PE=1 SV=2
Length = 486
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 25/251 (9%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD--FAYVARDRSTRRHMCHVFR 58
M L + A+ L +P + ++++ QP+ IRVWGVG GRD FA+VA D+ + CHVF
Sbjct: 172 MILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFC 231
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQLA--KPVLGGEGGRGGAVRPTNLPTERPQSF 116
CD+PA+ IA+ L +C +I+ ER + + P + P +LP R
Sbjct: 232 CDVPAKAIASALHGLCAQILSERVEVSGDASCCSP---------DPISPEDLP--RQVEL 280
Query: 117 PTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITI 176
+ + + A Y+G++ V+K GMD+LN AI TL + ++ W ++V+ S++T
Sbjct: 281 LDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTA 340
Query: 177 H------STDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSS 230
H ST+EE + +C VR ++F+G+G + I + F F +P +
Sbjct: 341 HPIQAEASTEEEP----LWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHA 396
Query: 231 GALCKTIEAAC 241
G L + ++AAC
Sbjct: 397 GGLSEAVQAAC 407
>sp|Q8SXX4|CAPON_DROME Capon-like protein OS=Drosophila melanogaster GN=CG42673 PE=2 SV=1
Length = 698
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 28/119 (23%)
Query: 12 DPENLTVLNTQPIHTIRVWGVGRDNG--RDFAYVARDRSTRRHMCHVFRCDMPA------ 63
DPE++ +LN PI+ R++ V D+ + F+Y+ARD ST C VF+ +
Sbjct: 97 DPEDIELLN-HPIY--RIFYVSHDSSDLKIFSYIARDASTDTFKCSVFKSHKKSQAMRIV 153
Query: 64 RTIANTLRDICKKIMI---------ERS-------LQANQLAKPVLGGEGGRGGAVRPT 106
RT+ ++C K + ERS L Q+++ L +G RGG T
Sbjct: 154 RTVGQAF-EVCHKFNLHKNSLEPNDERSDISSSELLDVEQISEQQLSEDGERGGGDNET 211
>sp|Q9UQF2|JIP1_HUMAN C-Jun-amino-terminal kinase-interacting protein 1 OS=Homo sapiens
GN=MAPK8IP1 PE=1 SV=1
Length = 711
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 127 LRAQYLGSIQVSKPGGMDILNNAIDTLVST--------VPQHLWQDVNIAVAPSMITIHS 178
R ++LGS+QV G D+L A+ + +T P ++++ +
Sbjct: 567 FRVKFLGSVQVPYHKGNDVLCAAMQKIATTRRLTVHFNPPSSCVLEISVRGVKIGVKADD 626
Query: 179 TDEETGGTLMAECRVRFLSFLGI-GHNVKQCAFIM-HTAQDLFIAHVFVTEPSSGALCKT 236
+ E G +++ +SF G N K FI H A F HVFV+E S+ AL ++
Sbjct: 627 SQEAKGNKCSHFFQLKNISFCGYHPKNNKYFGFITKHPADHRFACHVFVSEDSTKALAES 686
Query: 237 I 237
+
Sbjct: 687 V 687
>sp|Q9R237|JIP1_RAT C-Jun-amino-terminal kinase-interacting protein 1 OS=Rattus
norvegicus GN=Mapk8ip1 PE=1 SV=2
Length = 708
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 127 LRAQYLGSIQVSKPGGMDILNNAIDTLVST--------VPQHLWQDVNIAVAPSMITIHS 178
R ++LGS+QV G D+L A+ + +T P ++++ +
Sbjct: 564 FRVKFLGSVQVPYHKGNDVLCAAMQKIATTRRLTVHFNPPSSCVLEISVRGVKIGVKADE 623
Query: 179 TDEETGGTLMAECRVRFLSFLGI-GHNVKQCAFIM-HTAQDLFIAHVFVTEPSSGALCKT 236
E G +++ +SF G N K FI H A F HVFV+E S+ AL ++
Sbjct: 624 AQEAKGNKCSHFFQLKNISFCGYHPKNNKYFGFITKHPADHRFACHVFVSEDSTKALAES 683
Query: 237 I 237
+
Sbjct: 684 V 684
>sp|Q9WVI9|JIP1_MOUSE C-Jun-amino-terminal kinase-interacting protein 1 OS=Mus musculus
GN=Mapk8ip1 PE=1 SV=2
Length = 707
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 127 LRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVN--------IAVAPSMITIHS 178
R ++LGS+QV G D+L A+ + +T + L N I+V I + +
Sbjct: 563 FRVKFLGSVQVPYHKGNDVLCAAMQKIATT--RRLTVHFNPPSSCVLEISVRGVKIGVKA 620
Query: 179 TD--EETGGTLMAECRVRFLSFLGI-GHNVKQCAFIM-HTAQDLFIAHVFVTEPSSGALC 234
D E G +++ +SF G N K FI H A F HVFV+E S+ AL
Sbjct: 621 DDALEAKGNKCSHFFQLKNISFCGYHPKNNKYFGFITKHPADHRFACHVFVSEDSTKALA 680
Query: 235 KTI 237
+++
Sbjct: 681 ESV 683
>sp|P16554|NUMB_DROME Protein numb OS=Drosophila melanogaster GN=numb PE=1 SV=2
Length = 556
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D E ++ Q I + R++ R F+Y+ RD +TRR MCH F
Sbjct: 128 LRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGF 177
>sp|Q32PV0|GULP1_DANRE PTB domain-containing engulfment adapter protein 1 OS=Danio rerio
GN=gulp1 PE=2 SV=1
Length = 300
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTI 66
+K+ DP++ V +H I + + R F ++ +D + +H+C+VF + A I
Sbjct: 78 GVKILDPKSKEVQYNCQLHRISFCADDKTDKRIFTFICKDSESNKHLCYVFDSEKCAEEI 137
Query: 67 ANTL 70
T+
Sbjct: 138 TLTI 141
>sp|Q2LC84|NUMB_RAT Protein numb homolog OS=Rattus norvegicus GN=Numb PE=1 SV=2
Length = 652
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + ++ Q I + R+ R F+Y+ RD +TRR +CH F
Sbjct: 95 LRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCF 144
>sp|P49757|NUMB_HUMAN Protein numb homolog OS=Homo sapiens GN=NUMB PE=1 SV=2
Length = 651
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + ++ Q I + R+ R F+Y+ RD +TRR +CH F
Sbjct: 95 LRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCF 144
>sp|Q9QZS3|NUMB_MOUSE Protein numb homolog OS=Mus musculus GN=Numb PE=1 SV=1
Length = 653
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + ++ Q I + R+ R F+Y+ RD +TRR +CH F
Sbjct: 95 LRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCF 144
>sp|Q9UBP9|GULP1_HUMAN PTB domain-containing engulfment adapter protein 1 OS=Homo sapiens
GN=GULP1 PE=1 SV=1
Length = 304
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTI 66
+K+ +P+ V + +H I + + R F ++ +D + +H+C+VF + A I
Sbjct: 78 GVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSESNKHLCYVFDSEKCAEEI 137
Query: 67 ANTL 70
T+
Sbjct: 138 TLTI 141
>sp|Q9Y6R0|NUMBL_HUMAN Numb-like protein OS=Homo sapiens GN=NUMBL PE=1 SV=1
Length = 609
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + +L Q I + R+ + F+Y+ RD +TRR +CH F
Sbjct: 125 LRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCF 174
>sp|O08919|NUMBL_MOUSE Numb-like protein OS=Mus musculus GN=Numbl PE=1 SV=3
Length = 604
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + +L Q I + R+ + F+Y+ RD +TRR +CH F
Sbjct: 125 LRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCF 174
>sp|A1L1I3|NUMBL_RAT Numb-like protein OS=Rattus norvegicus GN=Numbl PE=1 SV=1
Length = 614
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
L++ D + +L Q I + R+ + F+Y+ RD +TRR +CH F
Sbjct: 125 LRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCF 174
>sp|Q5PQS4|GULP1_RAT PTB domain-containing engulfment adapter protein 1 OS=Rattus
norvegicus GN=Gulp1 PE=1 SV=1
Length = 304
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTI 66
+K+ +P+ V + +H I + + R F ++ +D + +H+C VF + A I
Sbjct: 78 GVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSESNKHLCFVFDSEKCAEEI 137
Query: 67 ANTL 70
T+
Sbjct: 138 TLTI 141
>sp|Q8K2A1|GULP1_MOUSE PTB domain-containing engulfment adapter protein 1 OS=Mus musculus
GN=Gulp1 PE=1 SV=1
Length = 304
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTI 66
+K+ +P+ V + +H I + + R F ++ +D + +H+C VF + A I
Sbjct: 78 GVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSESNKHLCFVFDSEKCAEEI 137
Query: 67 ANTL 70
T+
Sbjct: 138 TLTI 141
>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens
GN=ANKS1A PE=1 SV=4
Length = 1134
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+K D N V+ I I ++ FAY+ +D T H CHVF
Sbjct: 990 VKFIDASNKNVIAEHEIRNISCAAQDPEDLCTFAYITKDLQTSHHYCHVF 1039
>sp|P59672|ANS1A_MOUSE Ankyrin repeat and SAM domain-containing protein 1A OS=Mus musculus
GN=Anks1a PE=1 SV=3
Length = 1150
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+K D N V+ I I ++ FAY+ +D T H CHVF
Sbjct: 1006 VKFIDASNKNVIAEHEIRNISCAAQDPEDLCTFAYITKDLQTSHHYCHVF 1055
>sp|Q9XTY6|NUMB1_CAEEL Numb-related protein 1 OS=Caenorhabditis elegans GN=num-1 PE=1 SV=1
Length = 593
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 18 VLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+L Q I + R + FAY+ RD ++RR MCH F
Sbjct: 164 LLVDQTIEKVSFCAPDRQTDKGFAYICRDGASRRWMCHGF 203
>sp|Q8STF6|DYC1_CAEEL Dystrophin-like protein 1 OS=Caenorhabditis elegans GN=dyc-1 PE=1
SV=1
Length = 887
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 48/170 (28%)
Query: 23 PIHTIRVWGVGRDNG--RDFAYVARDRSTRRHMCHVFRCDMPA------RTIANTLRDIC 74
PI+ R++ V D+ + F+Y+ARD ++ C+VF+C + RTI ++C
Sbjct: 112 PIY--RIFYVSHDSQDLQIFSYIARDGASNTFKCNVFKCSKKSQAMRVVRTIGQAF-EVC 168
Query: 75 KKI----MIER----------SLQANQLAKP----VLGGEGGRGGAVRPTNLPTERPQSF 116
K+ M E+ S+Q+ A P V+ GGR R +
Sbjct: 169 HKVAQDQMQEKHEDEAAKSKISMQSEDEAGPNALDVIEERGGREEDSRSS---------- 218
Query: 117 PTPMEEPK--KILRAQYLGSIQVSKP------GGMDILNNAIDTLVSTVP 158
+PME P L + L Q KP GG I AI V +P
Sbjct: 219 -SPMEAPPVGGPLYGKRLSLFQPRKPSTTSSSGGTAIDTTAIPENVLEIP 267
>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B
OS=Rattus norvegicus GN=Anks1b PE=1 SV=1
Length = 1260
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+K D N ++ I I ++ FAY+ +D + H CHVF
Sbjct: 1113 GVKFIDAANKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVF 1163
>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B
OS=Mus musculus GN=Anks1b PE=1 SV=3
Length = 1259
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+K D N ++ I I ++ FAY+ +D + H CHVF
Sbjct: 1112 GVKFIDAANKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVF 1162
>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B
OS=Homo sapiens GN=ANKS1B PE=1 SV=2
Length = 1248
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+K D N ++ I I ++ FAY+ +D + H CHVF
Sbjct: 1113 GVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVF 1163
>sp|Q6P2K3|CC067_MOUSE Uncharacterized protein C3orf67 homolog OS=Mus musculus PE=2 SV=2
Length = 674
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 64 RTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRP----TNLPTERPQSFPTP 119
R+I +C++ ERS+ + +++ +L + G G+ RP T LP + P +P P
Sbjct: 278 RSIRYKNSQLCQQPTEERSVNSTEVSA-LLADQQGEKGSARPLKQTTPLPAKLPIPYPHP 336
Query: 120 MEEP 123
+EP
Sbjct: 337 PQEP 340
>sp|A2AWA9|RBGP1_MOUSE Rab GTPase-activating protein 1 OS=Mus musculus GN=Rabgap1 PE=2
SV=1
Length = 1064
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 2 DLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD---FAYVARDRSTRRHMCHVFR 58
++ EG ++L DP+ T + PI+ I G D + FA+ + HVFR
Sbjct: 185 NVSEGTVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAELFRIHVFR 244
Query: 59 CDM 61
C++
Sbjct: 245 CEI 247
>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B
OS=Danio rerio GN=anks1b PE=3 SV=1
Length = 1280
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 7 ALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVF 57
+K D N ++ I I ++ FAY+ +D + H CHVF
Sbjct: 1123 GVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSSHHYCHVF 1173
>sp|Q9UKG1|DP13A_HUMAN DCC-interacting protein 13-alpha OS=Homo sapiens GN=APPL1 PE=1 SV=1
Length = 709
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRH-----MCHVFRCDMP 62
LKL DP+ T P+ + ++ ++N R F +V R S R +C++F +
Sbjct: 552 LKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNE 611
Query: 63 ARTIANTLRDICKKIMIERSL 83
I +++ + K+I + L
Sbjct: 612 GEKICDSV-GLAKQIALHAEL 631
>sp|Q5RAN1|RBGP1_PONAB Rab GTPase-activating protein 1 OS=Pongo abelii GN=RABGAP1 PE=2
SV=1
Length = 1069
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 2 DLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD---FAYVARDRSTRRHMCHVFR 58
++ EG ++L DP+ T + PI+ I G D + FA+ + HVFR
Sbjct: 190 NVSEGIVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAELFRIHVFR 249
Query: 59 CDM 61
C++
Sbjct: 250 CEI 252
>sp|Q9Y3P9|RBGP1_HUMAN Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1
SV=3
Length = 1069
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 2 DLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD---FAYVARDRSTRRHMCHVFR 58
++ EG ++L DP+ T + PI+ I G D + FA+ + HVFR
Sbjct: 190 NVSEGIVRLLDPQTNTEIANYPIYKILFCVRGHDGTPESDCFAFTESHYNAELFRIHVFR 249
Query: 59 CDM 61
C++
Sbjct: 250 CEI 252
>sp|Q985A3|RECO_RHILO DNA repair protein RecO OS=Rhizobium loti (strain MAFF303099)
GN=recO PE=3 SV=1
Length = 253
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 170 APSMITIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPS 229
A S++ +H D + G L+A + L LG G ++ QCA T QDL +V+ S
Sbjct: 113 ALSVMIVHLDDADAAGELVARFELLILDELGFGLDLSQCA-ATGTRQDL----AYVSPKS 167
Query: 230 SGALCK 235
A+ +
Sbjct: 168 GRAVSR 173
>sp|Q043I0|FTHS_LACGA Formate--tetrahydrofolate ligase OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=fhs PE=3 SV=1
Length = 559
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 141 GGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTLMAECRVRFLSFLG 200
G M L +AIDTL + V +++QD ++ + P+ I + + TL + F G
Sbjct: 132 GDMHALTSAIDTLAALVDNYIYQDNSLELDPNRILLKRGIDVNDRTLRKITIGQGSRFNG 191
Query: 201 IGHNVKQCAFIMHTAQDLF 219
I H + +F + A +L
Sbjct: 192 IEH---EASFAITVANELM 207
>sp|A4SR27|MUTL_AERS4 DNA mismatch repair protein MutL OS=Aeromonas salmonicida (strain
A449) GN=mutL PE=3 SV=1
Length = 627
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 98 GRGGAVRPTNLPTERPQSFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVST- 156
G+G A +P LP SF P K L A ++ K G+++ + DT++ T
Sbjct: 484 GQGLAAQPLLLPV----SFKLP-----KNLIALVEAQERLLKRMGLELKSGGRDTMILTR 534
Query: 157 VPQHLWQDVNIAVAPSMITIHSTDEETGGTLMAECRVRFLSFLGIGHN 204
VP L Q + + P ++ I + ++ + +AE ++L GI H
Sbjct: 535 VPALLRQTDLVRLLPELLQIIESGSDSDASQLAEVLCQWLVEQGISHE 582
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,210,684
Number of Sequences: 539616
Number of extensions: 3887843
Number of successful extensions: 9986
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9897
Number of HSP's gapped (non-prelim): 81
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)