RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3532
(242 letters)
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member
2; phosphotyrosine-interaction domain, amyloid disease,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.2
PDB: 2roz_B
Length = 136
Score = 160 bits (405), Expect = 2e-50
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 113 PQSFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPS 172
S PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA +
Sbjct: 4 GSSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADA 63
Query: 173 MITIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGA 232
+T+ E+ ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++
Sbjct: 64 TVTV--ISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAAN 121
Query: 233 LCKTIEAAC 241
+ + ++AAC
Sbjct: 122 VSEAVQAAC 130
Score = 53.8 bits (129), Expect = 2e-09
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 10 LTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIANT 69
+++ VL + + GVG+D FA++ D +R CHVF C+ A ++
Sbjct: 68 ISEKNEEEVLVECRVRFLSFMGVGKDV-HTFAFIM-DTGNQRFECHVFWCEPNAANVSEA 125
Query: 70 LRDIC 74
++ C
Sbjct: 126 VQAAC 130
>2dyq_A Amyloid beta A4 precursor protein-binding family 3;
phosphotyrosine-interaction domain (PTB/PID alzheimer'S
disease, structural genomics, NPPSFA; 3.10A {Homo
sapiens}
Length = 144
Score = 155 bits (394), Expect = 1e-48
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 115 SFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMI 174
S + + + A Y+G++ V+K GMD+LN AI TL + ++ W ++V+ S++
Sbjct: 6 SGLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLM 65
Query: 175 TIHSTDEETGGT--LMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGA 232
T H E + +C VR ++F+G+G + I + F F +P +G
Sbjct: 66 TAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGG 125
Query: 233 LCKTIEAACK 242
L + ++AAC
Sbjct: 126 LSEAVQAACM 135
Score = 54.9 bits (132), Expect = 8e-10
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 9 KLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIAN 68
+ L P+ + GVGRD F +A D + C F C A ++
Sbjct: 71 QAEASTEEEPLWQCPVRLVTFIGVGRDP-HTFGLIA-DLGRQSFQCAAFWCQPHAGGLSE 128
Query: 69 TLRDICK 75
++ C
Sbjct: 129 AVQAACM 135
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor
protein-binding family B member...; chimera, Fe65L, PID
domain, amyloid precursor protein; NMR {Mus musculus}
PDB: 2yt1_A
Length = 176
Score = 156 bits (394), Expect = 4e-48
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 114 QSFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSM 173
S PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA +
Sbjct: 51 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 110
Query: 174 ITIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGAL 233
+T+ E+ ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++ +
Sbjct: 111 VTV--ISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANV 168
Query: 234 CKTIEAAC 241
+ ++AAC
Sbjct: 169 SEAVQAAC 176
Score = 55.9 bits (134), Expect = 6e-10
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 10 LTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIANT 69
+++ VL + + GVG+D FA++ D +R CHVF C+ A ++
Sbjct: 114 ISEKNEEEVLVECRVRFLSFMGVGKDV-HTFAFIM-DTGNQRFECHVFWCEPNAANVSEA 171
Query: 70 LRDIC 74
++ C
Sbjct: 172 VQAAC 176
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and
amyloid beta A4 protein...; chimera, Fe65L, PID domain,
amyloid precursor protein; NMR {Mus musculus}
Length = 185
Score = 153 bits (386), Expect = 7e-47
Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 2/130 (1%)
Query: 113 PQSFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPS 172
S PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA +
Sbjct: 4 GSSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADA 63
Query: 173 MITIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGA 232
+T+ E+ ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++
Sbjct: 64 TVTV--ISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAAN 121
Query: 233 LCKTIEAACK 242
+ + ++AAC
Sbjct: 122 VSEAVQAACS 131
Score = 52.9 bits (126), Expect = 7e-09
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 10 LTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIANT 69
+++ VL + + GVG+D FA++ D +R CHVF C+ A ++
Sbjct: 68 ISEKNEEEVLVECRVRFLSFMGVGKDV-HTFAFIM-DTGNQRFECHVFWCEPNAANVSEA 125
Query: 70 LRDICKKIMIERSLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQS 115
++ C + + G G G + P ER S
Sbjct: 126 VQAACSG------PSSGIEGRGSSGSSGSSGSSGDAAVTPEERHLS 165
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 144 bits (364), Expect = 5e-44
Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 118 TPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIH 177
P E + + YLG++ V+KP G+D++N A+++++S+ + W +++VAP+ +TI
Sbjct: 1 APKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTIL 60
Query: 178 STDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTI 237
E ++ ECRVRFLSFL +G +V AFIM F H+F EP++ +L + +
Sbjct: 61 HQQTEA---VLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAV 117
Query: 238 EAACK 242
+AAC
Sbjct: 118 QAACM 122
Score = 53.7 bits (129), Expect = 2e-09
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIA 67
L + + VL + + VGRD FA++ CH+F C+ A +++
Sbjct: 57 LTILHQQTEAVLGECRVRFLSFLAVGRDV-HTFAFIMAAGPAS-FCCHMFWCEPNAASLS 114
Query: 68 NTLRDICK 75
++ C
Sbjct: 115 EAVQAACM 122
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta
structure, phosphotyrosine binding domain; 2.20A {Homo
sapiens} PDB: 3d8e_A 3d8f_A
Length = 148
Score = 132 bits (334), Expect = 1e-39
Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNG--RDFAYVARDRSTRRHMCHVFR 58
+ L++ LKL +P++ +L+ QPI +IRVWGVGRD+G RDFAYVARD+ T+ CHVFR
Sbjct: 59 LQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVFR 118
Query: 59 CDMPARTIANTLRDICKKIMIERSLQANQ 87
C+ PA+ IA +L +IC KIM E +
Sbjct: 119 CEAPAKNIATSLHEICSKIMAELEHHHHH 147
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 75.0 bits (184), Expect = 4e-17
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMP-ARTI 66
L++ D + +L Q I + R+ + F+Y+ RD +TRR +CH F +
Sbjct: 89 LRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERL 148
Query: 67 ANTLRDICK 75
++ +
Sbjct: 149 SHAVGCAFA 157
Score = 62.3 bits (151), Expect = 2e-12
Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 99 RGGAVRPTNLPTERPQSFPTPMEEPKKILR-------AQYLGSIQVSKPGGMDILNNAID 151
G + NL + S P + + +R +YLG ++V + GM + +A+
Sbjct: 9 SGVDLGTENLYFQSMASRPHQWQADEDAVRKGTCSFPVRYLGHVEVEESRGMHVCEDAVK 68
Query: 152 TLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTLMAECRVRFLSFLGIG-HNVKQCAF 210
L + + + V+ + + D++T L+ + + +SF + K ++
Sbjct: 69 KLKAMGRK--SVKSVLWVSADGLRV--VDDKTKDLLV-DQTIEKVSFCAPDRNLDKAFSY 123
Query: 211 IM-HTAQDLFIAHVFVTEPSSG-ALCKTIEAACK 242
I +I H F+ SG L + A
Sbjct: 124 ICRDGTTRRWICHCFLALKDSGERLSHAVGCAFA 157
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 73.1 bits (179), Expect = 2e-16
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTR-----RHMCH 55
+ + LKL DP+ T P+ + ++ ++N R F +V R S R +C+
Sbjct: 61 LLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCY 120
Query: 56 VFRCDMPARTIANTLR---DICKKIMIERSLQANQ 87
+F + I +++ I ++R Q
Sbjct: 121 IFESNNEGEKICDSVGLAKQIALHAELDRRASEKQ 155
Score = 60.4 bits (146), Expect = 9e-12
Identities = 13/125 (10%), Positives = 43/125 (34%), Gaps = 13/125 (10%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLW---QDVNIAVAPSMITIHSTDEETG 184
++LGS++V D++ + +++ H + ++ V + + +
Sbjct: 19 IVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLLVTCDCLKLIDPQTQ-- 76
Query: 185 GTLMAECRVRFLSFLGIGHNVKQC-AFIMHTAQD------LFIAHVFVTEPSSGALCKTI 237
+ + K+ F++ T+ + ++F + +C ++
Sbjct: 77 -VTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNEGEKICDSV 135
Query: 238 EAACK 242
A +
Sbjct: 136 GLAKQ 140
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 70.8 bits (173), Expect = 2e-15
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTR-----RHMCH 55
+ + LKL DP+ T P+ + ++ ++N R F +V R S R +C+
Sbjct: 74 LLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCY 133
Query: 56 VFRCDMPARTIANTLRDICKKIMIERSLQANQLAK 90
+F + I +++ K+I + L K
Sbjct: 134 IFESNNEGEKICDSVGL-AKQIALHAELDRRASEK 167
Score = 57.7 bits (139), Expect = 1e-10
Identities = 16/149 (10%), Positives = 50/149 (33%), Gaps = 14/149 (9%)
Query: 104 RPTNLPTERPQSFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQH--- 160
++ R + + ++LGS++V D++ + +++ H
Sbjct: 9 HHSSGLVPRGSHMTEDSILHQ-LFIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIF 67
Query: 161 LWQDVNIAVAPSMITIHSTDEETGGTLMAECRVRFLSFLGIGH-NVKQCAFIMHTA---- 215
+ ++ V + + D +T + + N + F++ T+
Sbjct: 68 RMTESHLLVTCDCLKL--IDPQT-QVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRS 124
Query: 216 --QDLFIAHVFVTEPSSGALCKTIEAACK 242
+ ++F + +C ++ A +
Sbjct: 125 ESNLSSVCYIFESNNEGEKICDSVGLAKQ 153
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 69.5 bits (170), Expect = 2e-15
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMP--ART 65
+ LTD ++ I+ I + + + FAY+A+ + CH F C A+
Sbjct: 55 IILTDSLTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQA 114
Query: 66 IANTLRDICK 75
+ T+ K
Sbjct: 115 VTLTVAQAFK 124
Score = 66.0 bits (161), Expect = 5e-14
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVST--VPQHLWQDVNIAVAPSMITIHSTDEETGG 185
+YLG V +P G ++ A+ +V+T Q V + V+P I + +
Sbjct: 7 SLKYLGMTLVERPKGEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDSLTS--- 63
Query: 186 TLMAECRVRFLSFLGIG-HNVKQCAFIM-HTAQDLFIAHVFVTEPSSGA--LCKTIEAAC 241
L+ + +S+ + K A+I + H F+ A + T+ A
Sbjct: 64 QLIENVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQAF 123
Query: 242 K 242
K
Sbjct: 124 K 124
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 66.5 bits (162), Expect = 5e-14
Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHL-----WQDVNIAVAPSMITIHSTDEE 182
+A+ +G +VS G + +++ L V Q + + ++ I I DE+
Sbjct: 21 KAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKI--FDEK 78
Query: 183 TGGTLMAECRVRFLSFLGIG-HNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIEAAC 241
T G L V +S++ + + ++ + T ++ + +
Sbjct: 79 T-GALQHHHAVHEISYIAKDITDHRAFGYVCGK-EGNHRFVAIKTAQAAEPVILDLRDLF 136
Query: 242 K 242
+
Sbjct: 137 Q 137
Score = 58.0 bits (140), Expect = 7e-11
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIA 67
+K+ D + + + +H I + R F YV H + A +
Sbjct: 72 IKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGK--EGNHRFVAIKTAQAAEPVI 129
Query: 68 NTLRDICK 75
LRD+ +
Sbjct: 130 LDLRDLFQ 137
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 64.2 bits (156), Expect = 4e-13
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIA 67
+K+ D + + + P++ I + R F YV +H + A +
Sbjct: 71 IKIIDEKTGVIEHEHPVNKISFIARDVTDNRAFGYVCGG--EGQHQFFAIKTGQQAEPLV 128
Query: 68 NTLRDICK 75
L+D+ +
Sbjct: 129 VDLKDLFQ 136
Score = 62.3 bits (151), Expect = 2e-12
Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHL-----WQDVNIAVAPSMITIHSTDEE 182
+A+ +G V G + +++ L Q + + ++ S I I DE+
Sbjct: 20 KAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKI--IDEK 77
Query: 183 TGGTLMAECRVRFLSFLGIG-HNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIEAAC 241
T G + E V +SF+ + + ++ + T + L ++
Sbjct: 78 T-GVIEHEHPVNKISFIARDVTDNRAFGYVCGG-EGQHQFFAIKTGQQAEPLVVDLKDLF 135
Query: 242 K 242
+
Sbjct: 136 Q 136
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB
domain, chimera protein, protein transport; HET: IPA
GOL; 1.90A {Rattus norvegicus}
Length = 162
Score = 58.6 bits (141), Expect = 5e-11
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPARTIA 67
+K+ + + + P+ TI + A RS + +CHVF + A+ IA
Sbjct: 64 IKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSQYKMICHVFESED-AQLIA 122
Query: 68 NTLRDICKKIMIERSLQANQ 87
++ + + L+AN
Sbjct: 123 QSIGQ-AFSVAYQEFLRANG 141
Score = 47.1 bits (111), Expect = 5e-07
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 128 RAQYLGSIQVSKPGGMDILN------NAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDE 181
A YLGS Q+ A+ + +V++ ++ I + + D
Sbjct: 12 AANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFISTQRIKVLNADT 71
Query: 182 ETGGTLMAECRVRFLSFLG-IGHNVKQCAFI-MHTAQDLFIAHVFVTEPSSGALCKTIEA 239
+ M + +R +S++ IG+ V A M +Q I HVF +E + + ++I
Sbjct: 72 Q---EPMMDHPLRTISYIADIGNIVVLMARRRMPRSQYKMICHVFESEDAQ-LIAQSIGQ 127
Query: 240 ACK 242
A
Sbjct: 128 AFS 130
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 48.7 bits (115), Expect = 3e-07
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD-FAYVARDRSTRRHMCHVFRC-DMPART 65
L L + ++ + +I G + + AYVA+D + CH+ C + A+
Sbjct: 131 LNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQ-RACHILECPEGLAQD 189
Query: 66 IANTLRDICK 75
+ +T+ +
Sbjct: 190 VISTIGQAFE 199
Score = 34.8 bits (79), Expect = 0.015
Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 38/150 (25%)
Query: 128 RAQYLGSIQVSKPG-------GMDILNNAIDTLVSTVP---------------------- 158
+Y+G ++V + + AI + VP
Sbjct: 53 LVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGR 112
Query: 159 ---QHLWQDVNIAVAPSMITIHSTDEETGGTLMAECRVRFLSFLGIG--HNVKQCAFIMH 213
+ + + V+ S + + + ++A ++ +SF G + A++
Sbjct: 113 SNLKFAGMPITLTVSTSSLNL--MAADC-KQIIANHHMQSISFASGGDPDTAEYVAYVAK 169
Query: 214 TAQDLFIAHVF-VTEPSSGALCKTIEAACK 242
+ H+ E + + TI A +
Sbjct: 170 DPVNQRACHILECPEGLAQDVISTIGQAFE 199
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein
1; structural genomics, signal transduction,
phosphorylation, PTB domain, NPPSFA; 1.90A {Mus
musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Length = 140
Score = 42.3 bits (99), Expect = 2e-05
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD---FAYVARDRSTRRHMCHVF 57
+ + + L DP + L + P+ I GR V ++ + H F
Sbjct: 53 LRVSPSQVTLLDPVSKEELESYPLDAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFF 112
Query: 58 RCD-MPARTIANTLR 71
+ + A I ++
Sbjct: 113 QGLLLGAELIREDIQ 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 4e-05
Identities = 33/233 (14%), Positives = 64/233 (27%), Gaps = 91/233 (39%)
Query: 2 DLDEGALKLT--DPE---NLTVLNTQP---------IHTIRVWGVGRDNGRDFA------ 41
+++E + T + + T TQP ++ G+ FA
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQ-FTQPALTLMEKAAFEDLKSKGL-IPADATFAGHSLGE 1766
Query: 42 YVARDRSTRRHMCHVFRCDMPARTIANTLRDICKKIMIERSLQANQLAKPVLGGEGGRGG 101
Y A + + A + ++ + +++ R Q+A P E GR
Sbjct: 1767 YAA--------LASL------ADVM--SIESLV-EVVFYRG-MTMQVAVP--RDELGRSN 1806
Query: 102 ----AVRPTNLPTERPQSFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTV 157
A+ P +V+ + A+ +V V
Sbjct: 1807 YGMIAINPG-----------------------------RVAASFSQE----ALQYVVERV 1833
Query: 158 PQHLWQDVNIA---VAPSMITIHSTDEETGGTLMA-ECRVRFLSFLGIGHNVK 206
+ V I V G L A + L+F+ + +
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVA-------AGDLRALDTVTNVLNFIKL-QKID 1878
Score = 36.6 bits (84), Expect = 0.007
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 60/164 (36%)
Query: 82 SLQANQLAKPVLGGEGGRGGAVRPTNLPTERPQSFPTPM--------EEPKKILRA--QY 131
SL + L + EG P+PM E+ + + +
Sbjct: 318 SLPPSILEDSLENNEGV------------------PSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 132 L---GSIQVSKPGGMDILNNAIDTLVST-VPQHLWQDVNIAV----APSMITIHSTDEET 183
L +++S L N LV + PQ L+ +N+ + APS +
Sbjct: 360 LPAGKQVEIS-------LVNGAKNLVVSGPPQSLYG-LNLTLRKAKAPS-------GLDQ 404
Query: 184 GGTLMAECRVRF-LSFLGIGHNVKQCAF---IMHTAQDLFIAHV 223
+E +++F FL + F ++ A DL +
Sbjct: 405 SRIPFSERKLKFSNRFLPVA-----SPFHSHLLVPASDLINKDL 443
Score = 34.6 bits (79), Expect = 0.030
Identities = 41/239 (17%), Positives = 74/239 (30%), Gaps = 73/239 (30%)
Query: 17 TVLNTQPIHTIRVWGVGRDNGRDFA--------YVAR---DRS-TRRHMCHVFRC--DMP 62
L IH + + ++ AR R ++ +FR +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 63 ARTIA------NT------LRDI------CKKIMIERSLQANQLAKPVLGGEGGRGGAVR 104
A+ +A NT LRD+ +I+ S A L++ +
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS--AETLSELI------------ 199
Query: 105 PTNLPTERPQSFPTPM------EEPKKILRAQYLGSIQVSKPG-GMDILNNAIDTLVST- 156
+ + F + E P YL SI +S P G+ L + + T
Sbjct: 200 --RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 157 -VPQHLW----------QDVNIAVAPSMITIHSTDEETGGTLMAECRVRFLSFLGI-GH 203
P L Q + AVA + + E+ + + + L F+G+ +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAE----TDSWESFFVSVRKA-ITVLFFIGVRCY 311
Score = 30.4 bits (68), Expect = 0.59
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 26/81 (32%)
Query: 133 GSIQVSKPGGMDILNNAIDTLVSTVPQHLW------QDVNIAVAPSMITIHSTDEETGGT 186
GS++ +L VP + Q+ + P + D+E
Sbjct: 14 GSLEHV------LL----------VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 187 LMAECRVRFLSFLGIGHNVKQ 207
AE +FL + + V+
Sbjct: 58 --AELVGKFLGY--VSSLVEP 74
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 38.7 bits (89), Expect = 6e-04
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 25/99 (25%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARD--------------------R 47
+K+ + + + P+ TI D G +AR +
Sbjct: 75 IKVLNADTQETMMDHPLRTI---SYIADIGNIVVLMARRRIPRSNSQENVEASHPSQDGK 131
Query: 48 STRRHMCHVFRCDMPARTIANTLRDICKKIMIERSLQAN 86
+ +CHVF + A+ IA ++ + + L+AN
Sbjct: 132 RQYKMICHVFESE-DAQLIAQSIGQ-AFSVAYQEFLRAN 168
Score = 31.0 bits (69), Expect = 0.20
Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 41/152 (26%)
Query: 128 RAQYLGSIQVSKPGG------MDILNNAIDTL------------VSTVPQHLWQDVNIAV 169
A YLGS Q+ M A+ + +V++ +
Sbjct: 11 AANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDLFI 70
Query: 170 APSMITIHSTDEETGGTLMAECRVRFLSF--------------LGIGHNVKQCAFIMHTA 215
I + + D M + +R +S+ N ++ H +
Sbjct: 71 LTQRIKVLNAD---TQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENVEASHPS 127
Query: 216 QDL-----FIAHVFVTEPSSGALCKTIEAACK 242
QD I HVF +E + + ++I A
Sbjct: 128 QDGKRQYKMICHVFESEDAQ-LIAQSIGQAFS 158
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus
gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Length = 134
Score = 30.7 bits (69), Expect = 0.16
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 131 YLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTLMAE 190
++ S+++ G ++ A+ + P V+ V+ IT+ TD +
Sbjct: 8 FINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITL--TDNQRKLFFRRH 65
Query: 191 CRVRFLSFLGI 201
+ ++F +
Sbjct: 66 YPLNTVTFCDL 76
Score = 30.0 bits (67), Expect = 0.30
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 28 RVWGVGRDNG--RDFAYVARD-RSTRRHMCHVFRCDM----PARTIANTLRDICKKIMI 79
R W +G + F +VAR ST ++CH+F ++ PA I N + ++M+
Sbjct: 81 RKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLF-AELDPDQPAAAIVNFVS----RVML 134
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1,
phosphotyrosine binding domain, PTB, TNS2, KIAA1075,
struct genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A
Length = 157
Score = 30.8 bits (69), Expect = 0.19
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 131 YLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTLMAE 190
YL S++ G + A +S P+ V+ V+ IT+ TD +
Sbjct: 20 YLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITL--TDNQRKLFFRRH 77
Query: 191 CRVRFLSFLGI 201
V ++F
Sbjct: 78 YPVNSITFSST 88
Score = 30.4 bits (68), Expect = 0.26
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 28 RVWGVGR-DNGRDFAYVARD-RSTRRHMCHVFRCDM----PARTIAN 68
R W + F +VA+ S ++CH+F ++ PA I
Sbjct: 93 RRWTNPDGTTSKIFGFVAKKPGSPWENVCHLF-AELDPDQPAGAIVT 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.0
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 5 EGALKLTDPENLTVLNTQPIHTI 27
+ +LKL ++ L + T+
Sbjct: 26 QASLKLYADDSAPALAIKA--TM 46
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase;
1.95A {Salvia fruticosa}
Length = 569
Score = 27.8 bits (61), Expect = 3.4
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Query: 114 QSFPTPMEEPKKILRAQYL-GSIQVSKPGGMDILNNA--IDTLVST-VPQHLWQDVNIAV 169
QSF + +E K ++RA + +++ +D + ID L + H +++
Sbjct: 51 QSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVE-- 108
Query: 170 APSMITIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPS 229
+ + + T+ E + +RF +V Q F + + +
Sbjct: 109 --ILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDT 166
Query: 230 SGALC 234
G L
Sbjct: 167 RGLLQ 171
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 27.2 bits (59), Expect = 5.6
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 23/75 (30%)
Query: 8 LKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRS------------------- 48
+K+ + + + + TI D G +AR R
Sbjct: 77 IKVLNADTQETMMDHALRTI---SYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGK 133
Query: 49 -TRRHMCHVFRCDMP 62
+ +CHVF +
Sbjct: 134 KQYKMICHVFESEDA 148
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA
length recognition, RNA binding protein/RNA complex;
2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Length = 172
Score = 26.7 bits (58), Expect = 5.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 79 IERSLQANQLAKPVLGG--EGGRGGAVRPTNLPTERP 113
+ER++Q N + G +GG GG P LP E P
Sbjct: 1 MERAIQGNDTREQANGERWDGGSGGITSPFKLPDESP 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,687,606
Number of extensions: 216099
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 49
Length of query: 242
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,160,982
Effective search space: 628308282
Effective search space used: 628308282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)