RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3532
(242 letters)
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding
family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 136
Score = 109 bits (273), Expect = 5e-31
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 113 PQSFPTPMEEPKKILRAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPS 172
S PTP E + R QYLG + V +P GMD LN+AI+ L+++ + W VN+ VA +
Sbjct: 4 GSSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADA 63
Query: 173 MITIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGA 232
+T+ E+ ++ ECRVRFLSF+G+G +V AFIM T F HVF EP++
Sbjct: 64 TVTVI--SEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAAN 121
Query: 233 LCKTIEAAC 241
+ + ++AAC
Sbjct: 122 VSEAVQAAC 130
Score = 57.4 bits (138), Expect = 3e-11
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 4 DEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCDMPA 63
D +++ VL + + GVG+D FA++ D +R CHVF C+ A
Sbjct: 62 DATVTVISEKNEEEVLVECRVRFLSFMGVGKDV-HTFAFI-MDTGNQRFECHVFWCEPNA 119
Query: 64 RTIANTLRDIC 74
++ ++ C
Sbjct: 120 ANVSEAVQAAC 130
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 148
Score = 75.0 bits (184), Expect = 1e-17
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHL-----WQDVNIAVAPSMITIHSTDEE 182
+A+ +G V G + +++ L Q + + ++ S I I DE+
Sbjct: 20 KAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKII--DEK 77
Query: 183 TGGTLMAECRVRFLSFLGIG-HNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIEAAC 241
TG E V +SF+ + + ++ + T + L ++
Sbjct: 78 TGVIEH-EHPVNKISFIARDVTDNRAFGYVCGG-EGQHQFFAIKTGQQAEPLVVDLKDLF 135
Query: 242 K 242
+
Sbjct: 136 Q 136
Score = 70.8 bits (173), Expect = 5e-16
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCD 60
+++ +K+ D + + + P++ I + R F YV +H +
Sbjct: 64 VNISLSGIKIIDEKTGVIEHEHPVNKISFIARDVTDNRAFGYVCGG--EGQHQFFAIKTG 121
Query: 61 MPARTIANTLRDICK 75
A + L+D+ +
Sbjct: 122 QQAEPLVVDLKDLFQ 136
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 135
Score = 72.3 bits (177), Expect = 8e-17
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTL 187
+YLG ++V + GM + A+ L + + V+ + + D+ET G +
Sbjct: 18 SVKYLGCVEVFESRGMQVCEEALKVLRQ--SRRRPVRGLLHVSGDGLRV--VDDETKGLI 73
Query: 188 MAECRVRFLSFLGIGHNVKQC-AFIM-HTAQDLFIAHVFVTEPSSG-ALCKTIEAACK 242
+ + + +SF N ++ ++I ++ H F+ SG L + A
Sbjct: 74 V-DQTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFA 130
Score = 68.1 bits (166), Expect = 3e-15
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCD 60
+ + L++ D E ++ Q I + R++ R F+Y+ RD +TRR MCH F
Sbjct: 55 LHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLAC 114
Query: 61 MP-ARTIANTLRDICK 75
+++ +
Sbjct: 115 KDSGERLSHAVGCAFA 130
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Length = 156
Score = 70.8 bits (173), Expect = 5e-16
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCD 60
+ + L++ D + ++ Q I + R+ R F+Y+ RD +TRR +CH F
Sbjct: 66 LWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAV 125
Query: 61 MP-ARTIANTLRDICK 75
+++ +
Sbjct: 126 KDTGERLSHAVGCAFA 141
Score = 69.7 bits (170), Expect = 1e-15
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTL 187
+YLG ++V + GM I +A+ L +T + + V+ + + DE+T L
Sbjct: 29 PVKYLGHVEVDESRGMHICEDAVKRLKATGKK--AVKAVLWVSADGLRV--VDEKT-KDL 83
Query: 188 MAECRVRFLSFLGIG-HNVKQCAFIM-HTAQDLFIAHVFVTEPSSG-ALCKTIEAACK 242
+ + + +SF + + ++I +I H F+ +G L + A
Sbjct: 84 IVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFA 141
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 129
Score = 70.0 bits (171), Expect = 6e-16
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRD---FAYVARDRSTRRHMCHVF 57
+ + + L DP + L + P+ I GR V ++ + H F
Sbjct: 48 LRVSPSQVTLLDPVSKEELESYPLDAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFF 107
Query: 58 RCD-MPARTIANTL 70
+ + A I +
Sbjct: 108 QGLLLGAELIREDI 121
Score = 66.9 bits (163), Expect = 6e-15
Identities = 15/123 (12%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQ--HLWQDVNIAVAPSMITIHSTDEETGG 185
+L + + + G+ + +A L Q Q++ + V+PS +T+ D +
Sbjct: 7 HVNHLVTFCLGEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTL--LDPVS-K 63
Query: 186 TLMAECRVRFLSFLGIGHNVKQCAFIM-----HTAQDLFIAHVFVTEPSSG-ALCKTIEA 239
+ + + + ++ + H F + + I+
Sbjct: 64 EELESYPLDAIVRCDAVMPRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQG 123
Query: 240 ACK 242
A +
Sbjct: 124 ALQ 126
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 152
Score = 69.7 bits (170), Expect = 1e-15
Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 8/120 (6%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLW-----QDVNIAVAPSMITIHSTDEE 182
+A+ +G +VS G + +++ L V Q + + ++ I I
Sbjct: 21 KAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEKT- 79
Query: 183 TGGTLMAECRVRFLSFLGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSGALCKTIEAACK 242
G L V +S++ + + + T ++ + + +
Sbjct: 80 --GALQHHHAVHEISYIAKDITDHRAFGYVCGKEGNHRFVAIKTAQAAEPVILDLRDLFQ 137
Score = 57.3 bits (138), Expect = 4e-11
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRRHMCHVFRCD 60
+ + G +K+ D + + + +H I + R F YV H +
Sbjct: 65 LTISFGGIKIFDEKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEGN--HRFVAIKTA 122
Query: 61 MPARTIANTLRDICK 75
A + LRD+ +
Sbjct: 123 QAAEPVILDLRDLFQ 137
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId:
9606]}
Length = 147
Score = 63.5 bits (154), Expect = 2e-13
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 15/128 (11%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTL 187
YL S++ G + A +S P+ V+ V+ IT+ TD +
Sbjct: 15 SVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITL--TDNQRKLFF 72
Query: 188 MAECRVRFLSFLGIGHNV-----------KQCAFIMHTAQD--LFIAHVFVTEPSSGALC 234
V ++F K F+ + H+F
Sbjct: 73 RRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPAG 132
Query: 235 KTIEAACK 242
+ K
Sbjct: 133 AIVTFITK 140
Score = 41.1 bits (96), Expect = 2e-05
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 19/87 (21%)
Query: 8 LKLTDPEN-LTVLNTQPIHTIRVWGVGRDN----------GRDFAYVARD-RSTRRHMCH 55
+ LTD + L P+++I + + F +VA+ S ++CH
Sbjct: 61 ITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCH 120
Query: 56 VFRC---DMPARTIANTLRDICKKIMI 79
+F D PA I + K+++
Sbjct: 121 LFAELDPDQPAGAIVTFIT----KVLL 143
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 56.2 bits (135), Expect = 7e-11
Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 16/117 (13%)
Query: 128 RAQYLGSIQVSKPGGMDILNNAIDTLVSTVPQHLWQDVNIAVAPSMITIHSTDEETGGTL 187
++ S+++ G ++ A+ + P V+ V+ IT+ TD +
Sbjct: 4 NVLFINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITL--TDNQRKLFF 61
Query: 188 MAECRVRFLSFLGIGHN------------VKQCAFIMH--TAQDLFIAHVFVTEPSS 230
+ ++F + K F+ + + H+F
Sbjct: 62 RRHYPLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLFAELDPD 118
Score = 34.6 bits (79), Expect = 0.003
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 24 IHTIRVWGV--GRDNGRDFAYVARD-RSTRRHMCHVFRC---DMPARTIANTLRDICKKI 77
R W G + F +VAR ST ++CH+F D PA I N + ++
Sbjct: 76 DPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLFAELDPDQPAAAIVNFVS----RV 131
Query: 78 MI 79
M+
Sbjct: 132 ML 133
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 56.6 bits (136), Expect = 1e-10
Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 40/184 (21%)
Query: 94 GGEGGRGGAVRPTNLPTERPQSFPTPMEEPKKILRAQYLGSIQVSKPG-------GMDIL 146
G E R G+ N PT + P +Y+G ++V + +
Sbjct: 5 GEEWTRHGSF--VNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVT 62
Query: 147 NNAIDTLVSTVP-------------------------QHLWQDVNIAVAPSMITIHSTDE 181
AI + VP + + + V+ S + +
Sbjct: 63 REAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNL--MAA 120
Query: 182 ETGGTLMAECRVRFLSF--LGIGHNVKQCAFIMHTAQDLFIAHVFVTEPSSG-ALCKTIE 238
+ ++A ++ +SF G + A++ + H+ + TI
Sbjct: 121 DCK-QIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIG 179
Query: 239 AACK 242
A +
Sbjct: 180 QAFE 183
Score = 52.0 bits (124), Expect = 6e-09
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 8 LKLTDPENLTVLNTQPIHTIR-VWGVGRDNGRDFAYVARDRSTRRHMCHVFRC-DMPART 65
L L + ++ + +I G D AYVA+D + CH+ C + A+
Sbjct: 115 LNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQ-RACHILECPEGLAQD 173
Query: 66 IANTLRDICK 75
+ +T+ +
Sbjct: 174 VISTIGQAFE 183
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 53.6 bits (128), Expect = 1e-09
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 24/90 (26%)
Query: 1 MDLDEGALKLTDPENLTVLNTQPIHTIRVWGVGRDNGRDFAYVARDRSTRR--------- 51
+ + +K+ + + + P+ TI D G +AR R R
Sbjct: 68 LFILTQRIKVLNADTQETMMDHPLRTISYIA---DIGNIVVLMARRRIPRSNSQENVEAS 124
Query: 52 -----------HMCHVFRCDMPARTIANTL 70
+CHVF + A+ IA ++
Sbjct: 125 HPSQDGKRQYKMICHVFESE-DAQLIAQSI 153
Score = 43.9 bits (103), Expect = 3e-06
Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 45/154 (29%)
Query: 128 RAQYLGSIQVSKPGG------MDILNNAIDTLVSTVPQHL------------WQDVNIAV 169
A YLGS Q+ M A+ + +V++ +
Sbjct: 11 AANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDLFI 70
Query: 170 APSMITIHSTDEETGGTLMAECRVRFLSFLGIGHNVKQCAFI------------------ 211
I + + +T M + +R +S+ I +
Sbjct: 71 LTQRIKV--LNADT-QETMMDHPLRTISY--IADIGNIVVLMARRRIPRSNSQENVEASH 125
Query: 212 ---MHTAQDLFIAHVFVTEPSSGALCKTIEAACK 242
Q I HVF +E + + ++I A
Sbjct: 126 PSQDGKRQYKMICHVFESEDAQ-LIAQSIGQAFS 158
>d5hpga_ g.14.1.1 (A:) Plasminogen {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 26.6 bits (58), Expect = 1.0
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 33 GRDNGRDFAYVARDRSTRRHMCHVFRCDMP 62
D G + Y + C V +C P
Sbjct: 56 DGDVGGPWCYTT-NPRKLYDYCDVPQCAAP 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 891,810
Number of extensions: 39946
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 21
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)