BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3534
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D8D|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain
pdb|3D8D|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain
pdb|3D8E|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|C Chain C, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8E|D Chain D, Crystal Structure Of The Human Fe65-Ptb1 Domain (Trigonal
Crystal Form)
pdb|3D8F|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|B Chain B, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|C Chain C, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
pdb|3D8F|D Chain D, Crystal Structure Of The Human Fe65-Ptb1 Domain With Bound
Phosphate (Trigonal Crystal Form)
Length = 148
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 232 FAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNH 269
FAVRSLGWVE++E +L P RSS AVN CI LS +N+
Sbjct: 5 FAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNN 42
>pdb|2E45|A Chain A, Solution Structure Of Fe65 Ww Domain
Length = 55
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 85 VEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPP 119
E + LP GW R +D G YYWHI +GT Q +PP
Sbjct: 14 FETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPP 48
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 140 NNDGPYYWHIKSGTIQRDPP 159
+ G YYWHI +GT Q +PP
Sbjct: 29 DTSGTYYWHIPTGTTQWEPP 48
>pdb|2HO2|A Chain A, Structure Of Human Fe65-Ww Domain In Complex With Hmena
Peptide.
pdb|2IDH|A Chain A, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|B Chain B, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|C Chain C, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|D Chain D, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|E Chain E, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|F Chain F, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|G Chain G, Crystal Structure Of Human Fe65 Ww Domain
pdb|2IDH|H Chain H, Crystal Structure Of Human Fe65 Ww Domain
pdb|2OEI|A Chain A, Crystal Structure Of Human Fe65-Ww Domain In Complex With
Human Mena Peptide
Length = 38
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 91 LPPGWERHEDNDGPYYWHIKSGTIQRDPP 119
LP GW R +D G YYWHI +GT Q +PP
Sbjct: 4 LPAGWMRVQDTSGTYYWHIPTGTTQWEPP 32
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 140 NNDGPYYWHIKSGTIQRDPP 159
+ G YYWHI +GT Q +PP
Sbjct: 13 DTSGTYYWHIPTGTTQWEPP 32
>pdb|2YSC|A Chain A, Solution Structure Of The Ww Domain From The Human Amyloid
Beta A4 Precursor Protein-Binding Family B Member 3,
Apbb3
Length = 39
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 91 LPPGWERHEDNDGPYYWHIKSGTIQRDPPEF 121
LPPGW + D G YYWH+ SG+ Q P +
Sbjct: 9 LPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 39
>pdb|3H5L|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
pdb|3H5L|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Silicibacter Pomeroyi
Length = 419
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 137 ETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSS--NSVLSMVT--- 191
E V +D YW GT Q DPPE YG K +KD E NG S N+ ++++T
Sbjct: 121 EMVKSDPDRYW----GTFQYDPPETLYGGGFLK--FLKDIEDNGEFSRPNNKIAIITGPG 174
Query: 192 --RSNTSSALEDLDGKRKEDLA-FKRRSYPARAESDTKDKL 229
N ++A+ D G+ D++ F+ + P T KL
Sbjct: 175 IYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKL 215
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 88 EEQLPPGWERHEDNDGPYYW-HI 109
EE+LPPGWE+ N YY+ HI
Sbjct: 4 EEKLPPGWEKRMSNGRVYYFNHI 26
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 88 EEQLPPGWERHEDNDGPYYW--HI 109
EE+LPPGWE+ DG Y+ HI
Sbjct: 4 EEKLPPGWEKRMSADGRVYYFNHI 27
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%)
Query: 198 ALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVN 257
+ D +GK + A E+D L+R V G V HDLT RS +
Sbjct: 149 VISDFEGKPTLMMRLANLRIEAIIEADVHLVLVRSEVSQEGMVFRRFHDLTLTRSRSPIF 208
Query: 258 KCIVDLSLGRNHHSTIYFQSD 278
+ +HHS IY ++D
Sbjct: 209 SLSWTVMHPIDHHSPIYGETD 229
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 198 ALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVN 257
+ D +GK + A E+D L+R + G V HDLT RS +
Sbjct: 149 VISDFEGKPTLMMRLANLRIEAIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIF 208
Query: 258 KCIVDLSLGRNHHSTIYFQSD 278
+ +HHS IY ++D
Sbjct: 209 SLSWTVMHPIDHHSPIYGETD 229
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 91 LPPGWERHEDNDGP-YYWHIKSGTIQRDPP 119
LPPGWER D +G YY+++++ T + P
Sbjct: 9 LPPGWERRTDVEGKVYYFNVRTLTTTWERP 38
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 198 ALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVN 257
A++D R E+ A + A ++ +D L+RF R ++E D A N
Sbjct: 152 AVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPN 211
Query: 258 KCIVDL 263
+CIV L
Sbjct: 212 RCIVAL 217
>pdb|2KYK|A Chain A, The Sandwich Region Between Two Lmp2a Py Motif Regulates
The Interaction Between Aip4ww2domain And Py Motif
Length = 39
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 91 LPPGWERHEDNDGPYYW 107
LPPGWER DN G Y+
Sbjct: 7 LPPGWERRVDNMGRIYY 23
>pdb|2WJ9|A Chain A, Ardb
pdb|2WJ9|B Chain B, Ardb
Length = 181
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 1 MSQMVPSPDIYQRSATYYEKPTPPRTLSLSEKAS-CTPAQG 40
M+ M+P+PD+Y S + + + +TLS + +S C P G
Sbjct: 2 MNVMLPAPDLYSLSFIHITRISYMKTLSQNTTSSACAPETG 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,771,368
Number of Sequences: 62578
Number of extensions: 357655
Number of successful extensions: 577
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 30
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)