Query psy3534
Match_columns 282
No_of_seqs 104 out of 117
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 19:08:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01272 FE65_N Fe65 Phosphotyr 100.0 1.8E-30 3.8E-35 219.6 3.9 48 229-276 1-48 (138)
2 PF00397 WW: WW domain; Inter 98.9 7.9E-10 1.7E-14 71.8 1.4 29 91-119 1-31 (31)
3 smart00456 WW Domain with 2 co 98.7 1.3E-08 2.7E-13 65.1 2.6 30 91-120 1-31 (32)
4 cd01216 Fe65 Fe65 Phosphotyros 98.6 4.4E-08 9.5E-13 81.3 4.0 35 229-268 1-35 (123)
5 KOG3259|consensus 98.5 4.6E-08 1E-12 85.4 2.2 37 87-123 3-41 (163)
6 cd00201 WW Two conserved trypt 98.4 1.2E-07 2.6E-12 59.6 2.5 29 92-120 1-30 (31)
7 KOG1891|consensus 97.2 0.00022 4.7E-09 66.6 2.3 45 76-123 117-162 (271)
8 cd01267 CED6_AIDA1b Phosphotyr 94.4 0.049 1.1E-06 44.9 3.7 33 230-267 2-34 (132)
9 cd00934 PTB Phosphotyrosine-bi 94.3 0.053 1.1E-06 42.2 3.6 34 230-268 2-35 (123)
10 PF00640 PID: Phosphotyrosine 94.2 0.054 1.2E-06 43.1 3.5 35 232-266 1-36 (140)
11 KOG1891|consensus 93.4 0.057 1.2E-06 50.8 2.7 66 51-121 53-125 (271)
12 smart00462 PTB Phosphotyrosine 92.1 0.21 4.5E-06 39.7 4.0 32 229-265 3-34 (134)
13 KOG4334|consensus 84.6 0.7 1.5E-05 47.9 2.7 37 85-121 149-186 (650)
14 COG5104 PRP40 Splicing factor 84.0 0.47 1E-05 48.6 1.2 29 93-121 15-44 (590)
15 cd01270 DYC-1 DYC-1 (DYB-1 bin 71.9 4.8 0.0001 35.0 3.6 21 229-252 2-22 (140)
16 KOG0155|consensus 71.5 2.2 4.8E-05 44.4 1.7 31 91-121 10-41 (617)
17 COG5104 PRP40 Splicing factor 68.3 2.2 4.8E-05 43.9 0.9 29 94-122 57-86 (590)
18 KOG3209|consensus 66.7 3.6 7.7E-05 44.6 2.0 35 87-121 219-254 (984)
19 PF01429 MBD: Methyl-CpG bindi 66.5 3 6.6E-05 31.9 1.1 23 86-108 6-37 (77)
20 cd01273 CED-6 CED-6 Phosphotyr 65.4 8.3 0.00018 32.6 3.6 30 229-263 8-37 (142)
21 KOG3427|consensus 63.3 2.6 5.7E-05 39.2 0.3 35 89-123 6-42 (222)
22 KOG0940|consensus 62.0 5 0.00011 39.5 1.9 80 37-122 10-97 (358)
23 COG1654 BirA Biotin operon rep 61.9 5.9 0.00013 31.3 2.0 25 250-274 30-54 (79)
24 cd01396 MeCP2_MBD MeCP2, MBD1, 58.3 7.2 0.00016 30.4 1.9 10 87-96 3-12 (77)
25 smart00391 MBD Methyl-CpG bind 56.9 7.3 0.00016 30.3 1.7 12 88-99 5-16 (77)
26 cd01208 X11 X11 Phosphotyrosin 56.9 12 0.00027 33.3 3.3 31 228-259 3-39 (156)
27 KOG3552|consensus 55.0 3.5 7.6E-05 45.8 -0.4 34 88-121 17-51 (1298)
28 KOG0150|consensus 50.1 9.1 0.0002 37.7 1.5 23 99-121 157-180 (336)
29 KOG4286|consensus 49.9 4.9 0.00011 43.7 -0.3 27 95-121 354-381 (966)
30 cd01212 JIP JNK-interacting pr 49.0 17 0.00037 31.5 2.9 32 230-266 3-34 (148)
31 cd01215 Dab Disabled (Dab) Pho 44.3 16 0.00034 31.9 2.0 33 227-264 10-42 (139)
32 KOG3209|consensus 40.8 15 0.00032 40.1 1.6 36 88-123 266-302 (984)
33 KOG3537|consensus 39.2 17 0.00038 37.5 1.7 18 227-244 34-51 (543)
34 cd01209 SHC SHC phosphotyrosin 33.6 62 0.0013 29.0 4.0 38 227-264 8-47 (160)
35 cd00122 MBD MeCP2, MBD1, MBD2, 32.1 35 0.00076 25.0 1.9 11 88-98 3-13 (62)
36 cd01258 PH_syntrophin Syntroph 29.5 50 0.0011 27.6 2.6 15 227-241 72-86 (108)
37 cd01397 HAT_MBD Methyl-CpG bin 24.1 47 0.001 26.1 1.5 19 89-107 4-30 (73)
38 PF06558 SecM: Secretion monit 21.1 54 0.0012 29.1 1.4 13 254-266 61-73 (148)
No 1
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.96 E-value=1.8e-30 Score=219.61 Aligned_cols=48 Identities=75% Similarity=1.087 Sum_probs=46.6
Q ss_pred ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccCCCcccccc
Q psy3534 229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQ 276 (282)
Q Consensus 229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~RnDirD~V~~ 276 (282)
++||||||||||||+||||||||||+|||||||||||||||++|+||.
T Consensus 1 ~~~faVrslGWve~~Eedl~p~~sS~avn~cI~~Ls~~~~d~~d~~g~ 48 (138)
T cd01272 1 PIRFAVRSLGWVEIAEEDLTPEKSSKAVNKCIVDLSLGRNDMLDVVGR 48 (138)
T ss_pred CcceeeeccceEEcchhhcCCcccHHHHHHHHHHHhccccccccCcCc
Confidence 579999999999999999999999999999999999999999999985
No 2
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.86 E-value=7.9e-10 Score=71.81 Aligned_cols=29 Identities=48% Similarity=1.068 Sum_probs=26.3
Q ss_pred CCCCccccccC-Cc-CEEEEeeCCCcccCCC
Q psy3534 91 LPPGWERHEDN-DG-PYYWHIKSGTIQRDPP 119 (282)
Q Consensus 91 LPPGWer~sds-~G-~YYwhv~Tg~tQWe~P 119 (282)
||+||++..+. +| .||||+.||+|||++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 89999977764 58 9999999999999998
No 3
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.67 E-value=1.3e-08 Score=65.08 Aligned_cols=30 Identities=47% Similarity=1.102 Sum_probs=28.1
Q ss_pred CCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 91 LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
||+||++..+..| .||+|+.|+++||++|.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 7999998888889 99999999999999996
No 4
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=98.59 E-value=4.4e-08 Score=81.26 Aligned_cols=35 Identities=60% Similarity=0.809 Sum_probs=32.3
Q ss_pred ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccC
Q psy3534 229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268 (282)
Q Consensus 229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~Rn 268 (282)
+++|+||+||||||+|.+ ++.+||+||++|.+.|+
T Consensus 1 ~~~F~VkyLG~~eV~~~~-----g~~vv~~ai~~L~~~~~ 35 (123)
T cd01216 1 PKVFAVRSLGWVEVAEED-----GSEALNKAIDDLSSCSN 35 (123)
T ss_pred CcEEEEEeeeeEEECCCC-----CHHHHHHHHHHHHhccc
Confidence 479999999999999987 99999999999998776
No 5
>KOG3259|consensus
Probab=98.50 E-value=4.6e-08 Score=85.44 Aligned_cols=37 Identities=43% Similarity=0.882 Sum_probs=33.7
Q ss_pred CCCCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534 87 AEEQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFTY 123 (282)
Q Consensus 87 ~~~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~~ 123 (282)
....||+||+ |+++++| .||||..|+.+|||+|+...
T Consensus 3 ~~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~ 41 (163)
T KOG3259|consen 3 DEEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS 41 (163)
T ss_pred ccccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence 3567999999 9999999 99999999999999998764
No 6
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.45 E-value=1.2e-07 Score=59.60 Aligned_cols=29 Identities=41% Similarity=0.918 Sum_probs=27.2
Q ss_pred CCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 92 PPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 92 PPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
|+||+++.+..| .||+|+.|+++||++|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 789998888889 99999999999999996
No 7
>KOG1891|consensus
Probab=97.16 E-value=0.00022 Score=66.59 Aligned_cols=45 Identities=29% Similarity=0.511 Sum_probs=35.2
Q ss_pred CCccccCCCCCCCCCCCCCccccccC-CcCEEEEeeCCCcccCCCCCCC
Q psy3534 76 PSLSSTLSSVEAEEQLPPGWERHEDN-DGPYYWHIKSGTIQRDPPEFTY 123 (282)
Q Consensus 76 d~iw~~~~~~~~~~~LPPGWer~sds-~G~YYwhv~Tg~tQWe~P~~~~ 123 (282)
-.-|+- -..-..|||||+|+.++ .|+||.|..+|++|+++|..++
T Consensus 117 tTHW~H---PlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~~s 162 (271)
T KOG1891|consen 117 TTHWVH---PLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCISS 162 (271)
T ss_pred cccccC---hhhhccCCcchhhccccccceeeeecccchhhhcCCCCCC
Confidence 345665 23445699999977655 6799999999999999998764
No 8
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=94.37 E-value=0.049 Score=44.87 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=28.8
Q ss_pred eEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhccc
Q psy3534 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGR 267 (282)
Q Consensus 230 ~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~R 267 (282)
+.|.|+.|||+|+.|. |++.++..||+.|-..+
T Consensus 2 v~f~vkyLGs~~V~~~-----~g~~~~~~Ai~~l~~~~ 34 (132)
T cd01267 2 VVYRAKFLGSLEIGKL-----KGTEVAREAIRKLKFSR 34 (132)
T ss_pred cEEEEEEEEEEEecCC-----CChHHHHHHHHHHHhhh
Confidence 5799999999999884 78999999999996544
No 9
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=94.32 E-value=0.053 Score=42.15 Aligned_cols=34 Identities=38% Similarity=0.547 Sum_probs=30.1
Q ss_pred eEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccC
Q psy3534 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268 (282)
Q Consensus 230 ~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~Rn 268 (282)
+.|.|+.||++++.+ .++.-.+++||+.|...++
T Consensus 2 ~~f~v~ylG~~~v~~-----~~g~~~~~~ai~~l~~~~~ 35 (123)
T cd00934 2 ISFNVKYLGSVEVPE-----PRGSQVVRDAIRKLKAASK 35 (123)
T ss_pred cEEEEEEEEEEEecC-----CCCchHHHHHHHHHHHhhh
Confidence 579999999999999 6788999999999986554
No 10
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=94.16 E-value=0.054 Score=43.13 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=30.7
Q ss_pred eEEeeeceeeeccc-cCCCcchhHHHHHHHHHhhcc
Q psy3534 232 FAVRSLGWVEISEH-DLTPERSSKAVNKCIVDLSLG 266 (282)
Q Consensus 232 FAVRSLGWVEmaEE-DLaPGKSSvAVNnCIrQLSy~ 266 (282)
|.|+.||.|||.+. ++..++-.-.|.+||+.|...
T Consensus 1 F~vkYLGs~~V~~~~~~~~~~g~~~v~~ai~~~~~~ 36 (140)
T PF00640_consen 1 FEVKYLGSVEVSSSRRGDKSRGSDVVREAIQRLKAE 36 (140)
T ss_dssp EEEEEEEEEEESSSSSTCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEECCccCCCcchhHHHHHHHHHHHHhh
Confidence 89999999999998 666667788999999998865
No 11
>KOG1891|consensus
Probab=93.44 E-value=0.057 Score=50.84 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=47.0
Q ss_pred CCccccccccccCCCCCCc------ccccCCCCccccCCCCCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 51 NNDLYAVPVKLRGASPLPP------LLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 51 ~~~lya~p~k~~~~~~~~~------~~~n~~d~iw~~~~~~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
+.+++++|-..+.+.-.++ .|++|--. .+-..|.+|||||-.--...| .||-.+.+.+|-|-+|-.
T Consensus 53 ~~~~l~~p~~~~~~~~~~~g~~a~~slq~~~s~-----~~~sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle 125 (271)
T KOG1891|consen 53 IEKRLASPQPPRFQSLQTLGSEALMSLQQYRSS-----CDCSEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE 125 (271)
T ss_pred hhhHhcCCCCCCcchhhccchhhhhhhhhcccc-----CCCcccCCCCCCcceeeEecCceeEeecCCCcccccChhh
Confidence 3566677766665543332 24444211 224678899999998888889 999999999999999954
No 12
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=92.13 E-value=0.21 Score=39.71 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=28.6
Q ss_pred ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534 229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL 265 (282)
Q Consensus 229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy 265 (282)
..+|.|+.||++++.+. ++.-.++.||++|..
T Consensus 3 ~~~f~v~YLGs~~v~~~-----~g~~~~~~ai~~l~~ 34 (134)
T smart00462 3 GVSFRVKYLGSVEVPEA-----RGLQVVQEAIRKLRA 34 (134)
T ss_pred ceEEEEEEEEEEEecCC-----CCcHHHHHHHHHHHH
Confidence 46899999999999986 488899999999986
No 13
>KOG4334|consensus
Probab=84.61 E-value=0.7 Score=47.87 Aligned_cols=37 Identities=32% Similarity=0.689 Sum_probs=33.8
Q ss_pred CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
++....||.||-.++-.+| .-|+|-.|+-..|.+|--
T Consensus 149 l~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYf 186 (650)
T KOG4334|consen 149 LDKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYF 186 (650)
T ss_pred CCCCCcCCCceEEEeecCCCceEEeeeeeeEeccCcee
Confidence 5677889999999999999 999999999999999954
No 14
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=84.02 E-value=0.47 Score=48.55 Aligned_cols=29 Identities=28% Similarity=0.668 Sum_probs=26.2
Q ss_pred CCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 93 PGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 93 PGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
.-|+.+.+.+| +||+|..||.+.|++|..
T Consensus 15 s~w~e~k~~dgRiYYYN~~T~kS~weKPke 44 (590)
T COG5104 15 SEWEELKAPDGRIYYYNKRTGKSSWEKPKE 44 (590)
T ss_pred HHHHHhhCCCCceEEEecccccccccChHH
Confidence 34999999999 999999999999999943
No 15
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=71.87 E-value=4.8 Score=35.03 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.5
Q ss_pred ceEeEEeeeceeeeccccCCCcch
Q psy3534 229 LIRFAVRSLGWVEISEHDLTPERS 252 (282)
Q Consensus 229 ~~~FAVRSLGWVEmaEEDLaPGKS 252 (282)
+++|-|+.||++|+.|- -|+.
T Consensus 2 GitF~vKYlG~~eV~~~---~g~~ 22 (140)
T cd01270 2 GITFEAKYVGSEEVPRP---NTRA 22 (140)
T ss_pred ceEEEEEEcceEEecCC---CCcC
Confidence 57999999999999993 5554
No 16
>KOG0155|consensus
Probab=71.46 E-value=2.2 Score=44.41 Aligned_cols=31 Identities=35% Similarity=0.941 Sum_probs=28.5
Q ss_pred CCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 91 LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
-|+||-..--+.| +||||..|....|++|..
T Consensus 10 aps~wtef~ap~G~pyy~ns~t~~st~ekP~~ 41 (617)
T KOG0155|consen 10 APSGWTEFKAPDGIPYYWNSETLESTWEKPSF 41 (617)
T ss_pred CCCCCccCCCCCCcceecccccccchhhCchh
Confidence 3599999999999 999999999999999976
No 17
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=68.32 E-value=2.2 Score=43.90 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=26.6
Q ss_pred CccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 94 GWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 94 GWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
||+......| +||+|+.|+.+-|..|...
T Consensus 57 ~Wke~~TadGkvyyyN~~TREs~W~iP~e~ 86 (590)
T COG5104 57 PWKECRTADGKVYYYNSITRESRWKIPPER 86 (590)
T ss_pred hHHHHhhcCCceEEecCccccccccCChhh
Confidence 7999999999 9999999999999999653
No 18
>KOG3209|consensus
Probab=66.70 E-value=3.6 Score=44.60 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=31.4
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
.+..||..||..-+..| +||-.++|++|.|..|..
T Consensus 219 ~~gplp~nwemayte~gevyfiDhntkttswLdprl 254 (984)
T KOG3209|consen 219 NLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRL 254 (984)
T ss_pred ccCCCCccceEeEeecCeeEeeecccccceecChhh
Confidence 34449999999999999 999999999999999984
No 19
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=66.48 E-value=3 Score=31.91 Aligned_cols=23 Identities=35% Similarity=0.894 Sum_probs=14.6
Q ss_pred CCCCCCCCCccccc--cCC----c---CEEEE
Q psy3534 86 EAEEQLPPGWERHE--DND----G---PYYWH 108 (282)
Q Consensus 86 ~~~~~LPPGWer~s--ds~----G---~YYwh 108 (282)
+....||.||++.. +.+ | +||+.
T Consensus 6 ~~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~s 37 (77)
T PF01429_consen 6 PLDPPLPDGWKREVVVRKSGSSAGKKDVYYYS 37 (77)
T ss_dssp CEBTTSTTT-EEEEEESSSSTTTTSEEEEEEE
T ss_pred cccCCCCCCCEEEEEEecCCCcCCceEEEEEC
Confidence 56788999999322 333 2 78877
No 20
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=65.40 E-value=8.3 Score=32.55 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=23.5
Q ss_pred ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHh
Q psy3534 229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDL 263 (282)
Q Consensus 229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQL 263 (282)
.+.|.|+.||.||+.+. |..-.+-.+|+.|
T Consensus 8 ~v~f~vkyLG~~eV~~~-----~g~~v~~eAi~ki 37 (142)
T cd01273 8 HVEYVAKFLGCVEVDQP-----KGSEVVREAIRKL 37 (142)
T ss_pred ceEEEEEEeeeEEecCC-----CCchHHHHHHHHH
Confidence 46999999999999873 4566677777766
No 21
>KOG3427|consensus
Probab=63.30 E-value=2.6 Score=39.23 Aligned_cols=35 Identities=29% Similarity=0.648 Sum_probs=30.7
Q ss_pred CCCCCCccccccCCc--CEEEEeeCCCcccCCCCCCC
Q psy3534 89 EQLPPGWERHEDNDG--PYYWHIKSGTIQRDPPEFTY 123 (282)
Q Consensus 89 ~~LPPGWer~sds~G--~YYwhv~Tg~tQWe~P~~~~ 123 (282)
-.||+.|-++.+.+. .||||+.|-..-|+-|..|-
T Consensus 6 ~rlp~~w~kv~~~s~~~~y~wn~~td~v~w~sp~~P~ 42 (222)
T KOG3427|consen 6 QRLPKLWTKVFDASPGSEYIWNIITDNVDWDSPSGPY 42 (222)
T ss_pred hcCCchhHhhcccccchhhhhhcccccccccCCCCCc
Confidence 458999999998754 99999999999999998764
No 22
>KOG0940|consensus
Probab=62.04 E-value=5 Score=39.46 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=52.2
Q ss_pred CccCCCCCCCCCCCC---CccccccccccCCCCCCcccccCCCCccccCCCCCCCCCCCCCcc-ccccCC---cCEEEEe
Q psy3534 37 PAQGASIPHVPGDLN---NDLYAVPVKLRGASPLPPLLADLSPSLSSTLSSVEAEEQLPPGWE-RHEDND---GPYYWHI 109 (282)
Q Consensus 37 ~~~~~~~~h~~g~~~---~~lya~p~k~~~~~~~~~~~~n~~d~iw~~~~~~~~~~~LPPGWe-r~sds~---G~YYwhv 109 (282)
...+..+-|+-+... +|+|+..|+.+..+...-+..-.+ .++-..-+.||++|. .++.-. +.||..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~------~ee~ldy~glprewf~~lS~e~~~p~~~~~~~ 83 (358)
T KOG0940|consen 10 PPQGPQQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFK------GEEGLDYGGLPREWFFLLSHEGFNPWYGLFQH 83 (358)
T ss_pred CCCCCceeEEEechhhhHHHHHHHHhCCCchhhhhcceeecc------cccccccCCCCcceeeeeccccCCcceeeeee
Confidence 344556677777666 889999999887652222211111 011234567999999 777665 4778888
Q ss_pred eCC-CcccCCCCCC
Q psy3534 110 KSG-TIQRDPPEFT 122 (282)
Q Consensus 110 ~Tg-~tQWe~P~~~ 122 (282)
-+. .|+|..|...
T Consensus 84 ~~~~~tlq~~P~sg 97 (358)
T KOG0940|consen 84 SRKDYTLWLNPRSG 97 (358)
T ss_pred cccccccccCCccC
Confidence 777 5999999754
No 23
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=61.88 E-value=5.9 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.064 Sum_probs=20.3
Q ss_pred cchhHHHHHHHHHhhcccCCCcccc
Q psy3534 250 ERSSKAVNKCIVDLSLGRNHHSTIY 274 (282)
Q Consensus 250 GKSSvAVNnCIrQLSy~RnDirD~V 274 (282)
|.|..||++||++|--+-.+|.-+.
T Consensus 30 giSRtaVwK~Iq~Lr~~G~~I~s~~ 54 (79)
T COG1654 30 GISRTAVWKHIQQLREEGVDIESVR 54 (79)
T ss_pred CccHHHHHHHHHHHHHhCCceEecC
Confidence 7899999999999987666665443
No 24
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=58.27 E-value=7.2 Score=30.38 Aligned_cols=10 Identities=50% Similarity=1.494 Sum_probs=8.1
Q ss_pred CCCCCCCCcc
Q psy3534 87 AEEQLPPGWE 96 (282)
Q Consensus 87 ~~~~LPPGWe 96 (282)
.++.||+||+
T Consensus 3 ~~~~lp~GW~ 12 (77)
T cd01396 3 EDPRLPPGWK 12 (77)
T ss_pred CCCCCCCCCE
Confidence 3566999998
No 25
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=56.92 E-value=7.3 Score=30.32 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=8.5
Q ss_pred CCCCCCCccccc
Q psy3534 88 EEQLPPGWERHE 99 (282)
Q Consensus 88 ~~~LPPGWer~s 99 (282)
..+||+||+|..
T Consensus 5 ~~Plp~GW~R~~ 16 (77)
T smart00391 5 RLPLPCGWRRET 16 (77)
T ss_pred cCCCCCCcEEEE
Confidence 344999999443
No 26
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=56.88 E-value=12 Score=33.25 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.7
Q ss_pred cceEeEEeeeceeeeccccCCCcchhH------HHHHH
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSK------AVNKC 259 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSv------AVNnC 259 (282)
+++-|+||.||=+|+=-| ..|-+|.+ |||+-
T Consensus 3 ~Gv~f~a~YlG~t~~~~~-~~~~~~tR~~~a~Eai~ri 39 (156)
T cd01208 3 EGVLFRARYLGSTQLLCE-KTPSKNVRMXQAQEAVSRI 39 (156)
T ss_pred CceEEEEEeeceeeeeec-CCCChhhhHHHHHHHHHHH
Confidence 357899999999995554 99999998 88873
No 27
>KOG3552|consensus
Probab=54.95 E-value=3.5 Score=45.77 Aligned_cols=34 Identities=38% Similarity=0.684 Sum_probs=29.3
Q ss_pred CCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
.-.||+||+|+.|+.| .||.++..+++..+.|.-
T Consensus 17 ~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~~ 51 (1298)
T KOG3552|consen 17 HEELSYGWERAIDSKGRSYYINHLNKTTTYEAPEC 51 (1298)
T ss_pred ccccchHHHHhhhcccchhHHhhcCCccCcCCCcc
Confidence 3469999999999999 999999999988877743
No 28
>KOG0150|consensus
Probab=50.07 E-value=9.1 Score=37.70 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=19.8
Q ss_pred ccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 99 EDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 99 sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
-..+| +|||++.||.+-|.+|.-
T Consensus 157 Knes~~~yy~n~~t~esvwk~P~~ 180 (336)
T KOG0150|consen 157 KNESGPTYYSNKRTNESVWKPPRI 180 (336)
T ss_pred cCCCCCCcceecCCCccccCCCCc
Confidence 34567 899999999999999974
No 29
>KOG4286|consensus
Probab=49.89 E-value=4.9 Score=43.71 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=23.4
Q ss_pred ccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 95 WERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 95 Wer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
|+|.-..+- +||-++-|.+||||+|.+
T Consensus 354 w~rais~nkvpyyinh~~q~t~wdhp~~ 381 (966)
T KOG4286|consen 354 WERAISPNKVPYYINHETQTTCWDHPKM 381 (966)
T ss_pred chhccCccccchhhcccchhhhccchHH
Confidence 886655566 999999999999999987
No 30
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=49.03 E-value=17 Score=31.53 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.5
Q ss_pred eEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcc
Q psy3534 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLG 266 (282)
Q Consensus 230 ~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~ 266 (282)
.+|.||.||=||+.| -|..-.|-.+||++-..
T Consensus 3 ~~f~vkyLGsveV~~-----~kG~~v~~~A~rki~~~ 34 (148)
T cd01212 3 ERFLLGYLGSVEVLA-----HKGNGVLCQAMRKIVGE 34 (148)
T ss_pred ceEEeEecceEEecC-----CCCcHHHHHHHHHHHHH
Confidence 379999999999997 46666777888887543
No 31
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=44.32 E-value=16 Score=31.89 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=22.6
Q ss_pred ccceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhh
Q psy3534 227 DKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLS 264 (282)
Q Consensus 227 ~~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLS 264 (282)
.+.+.|-|+-|||+|+.|. |-....-..|+.|-
T Consensus 10 g~gv~f~aKylG~~eV~e~-----RG~~v~~~Ai~klk 42 (139)
T cd01215 10 GNGVSYKAKLIGIQEVDKA-----RGDAMCAEAMRKAK 42 (139)
T ss_pred CCcEEEEEEecccEecccC-----CchHHHHHHHHHHH
Confidence 3568999999999999983 33333445555554
No 32
>KOG3209|consensus
Probab=40.81 E-value=15 Score=40.11 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=31.4
Q ss_pred CCCCCCCccccccC-CcCEEEEeeCCCcccCCCCCCC
Q psy3534 88 EEQLPPGWERHEDN-DGPYYWHIKSGTIQRDPPEFTY 123 (282)
Q Consensus 88 ~~~LPPGWer~sds-~G~YYwhv~Tg~tQWe~P~~~~ 123 (282)
+..||-||+++.|. -|+||+.+....||++-|+...
T Consensus 266 d~elPygWeki~dpiYg~yyvdHiN~~sq~enpvlea 302 (984)
T KOG3209|consen 266 DQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVLEA 302 (984)
T ss_pred cccccccccccCCccceeEEecccchhhhhccchhhc
Confidence 44599999999997 5699999999999999998753
No 33
>KOG3537|consensus
Probab=39.18 E-value=17 Score=37.55 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.3
Q ss_pred ccceEeEEeeeceeeecc
Q psy3534 227 DKLIRFAVRSLGWVEISE 244 (282)
Q Consensus 227 ~~~~~FAVRSLGWVEmaE 244 (282)
...-||.|+.||-||+-|
T Consensus 34 tgtCsF~VkYLG~VEV~E 51 (543)
T KOG3537|consen 34 TGTCSFPVKYLGHVEVFE 51 (543)
T ss_pred cceeeeeeeeeeeEEEec
Confidence 344599999999999988
No 34
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=33.57 E-value=62 Score=29.01 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=29.0
Q ss_pred ccceEeEEeeeceeeeccc--cCCCcchhHHHHHHHHHhh
Q psy3534 227 DKLIRFAVRSLGWVEISEH--DLTPERSSKAVNKCIVDLS 264 (282)
Q Consensus 227 ~~~~~FAVRSLGWVEmaEE--DLaPGKSSvAVNnCIrQLS 264 (282)
...+.|+||.||=+|+.+- -|..+.=+--+--||+-+.
T Consensus 8 ~~GV~y~vrYlG~~eV~~Smr~~~~~~Rtqv~rEaI~rV~ 47 (160)
T cd01209 8 GPGVSYLVRYMGCVEVLQSMRALDFETRTQVTRECISLVC 47 (160)
T ss_pred cCCcEEEEEEeeEEeehhhcccCCcchhHHHHHHHHHHHH
Confidence 3568999999999999764 4555555666788888775
No 35
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=32.10 E-value=35 Score=25.04 Aligned_cols=11 Identities=55% Similarity=1.488 Sum_probs=8.1
Q ss_pred CCCCCCCcccc
Q psy3534 88 EEQLPPGWERH 98 (282)
Q Consensus 88 ~~~LPPGWer~ 98 (282)
...||.||+|.
T Consensus 3 ~~P~p~GW~R~ 13 (62)
T cd00122 3 RDPLPPGWKRE 13 (62)
T ss_pred CCCCCCCeEEE
Confidence 35689999943
No 36
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.50 E-value=50 Score=27.60 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.2
Q ss_pred ccceEeEEeeeceee
Q psy3534 227 DKLIRFAVRSLGWVE 241 (282)
Q Consensus 227 ~~~~~FAVRSLGWVE 241 (282)
+...||+||+..|||
T Consensus 72 ~~~~~F~irtg~~ve 86 (108)
T cd01258 72 QRDNCFLIRTGTQVE 86 (108)
T ss_pred CCceEEEEEcCCcee
Confidence 466899999999943
No 37
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=24.10 E-value=47 Score=26.15 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=12.7
Q ss_pred CCCCCCccccc-------cCCc-CEEE
Q psy3534 89 EQLPPGWERHE-------DNDG-PYYW 107 (282)
Q Consensus 89 ~~LPPGWer~s-------ds~G-~YYw 107 (282)
.+||.||+|.. +..| +||+
T Consensus 4 ~Pl~~GW~Re~vir~~~~~~~~dV~Y~ 30 (73)
T cd01397 4 VPLELGWRRETRIRGLGGRIQGEVAYY 30 (73)
T ss_pred CCCCCCceeEEEeccCCCCccceEEEE
Confidence 57999999433 3344 7777
No 38
>PF06558 SecM: Secretion monitor precursor protein (SecM); InterPro: IPR009502 This family consists of several bacterial Secretion monitor precursor (SecM) proteins. SecM is known to regulate SecA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. The eubacterial protein secretion machinery consists of a number of soluble and membrane associated components. One critical element is SecA ATPase, which acts as a molecular motor to promote protein secretion at translocation sites that consist of SecYE, the SecA receptor, and SecG and SecDFyajC proteins, which regulate SecA membrane cycling [].; GO: 0045182 translation regulator activity
Probab=21.05 E-value=54 Score=29.11 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhcc
Q psy3534 254 KAVNKCIVDLSLG 266 (282)
Q Consensus 254 vAVNnCIrQLSy~ 266 (282)
-||.+.||+||+-
T Consensus 61 HAiRtVIRhLSFa 73 (148)
T PF06558_consen 61 HAIRTVIRHLSFA 73 (148)
T ss_pred HHHHHHHHHhccc
Confidence 5889999999983
Done!