Query psy3534
Match_columns 282
No_of_seqs 104 out of 117
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:09:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d8d_A Amyloid beta A4 precurs 99.8 2.5E-20 8.7E-25 158.6 5.6 46 229-274 2-47 (148)
2 2e45_A Fe65 protein, amyloid b 99.7 8.4E-18 2.9E-22 123.0 3.7 47 75-122 5-51 (55)
3 2ysc_A Amyloid beta A4 precurs 99.2 3.6E-12 1.2E-16 86.6 3.2 36 86-121 4-39 (39)
4 2ho2_A Fe65 protein, amyloid b 99.2 3.9E-12 1.3E-16 86.1 2.3 34 89-122 2-35 (38)
5 1wr3_A Ubiquitin-protein ligas 99.1 4.2E-11 1.4E-15 78.5 2.7 33 88-120 2-35 (36)
6 2jv4_A Peptidyl-prolyl CIS/tra 99.0 7.2E-11 2.5E-15 85.0 3.0 35 88-122 5-41 (54)
7 2ysh_A GAS-7, growth-arrest-sp 99.0 9.6E-11 3.3E-15 78.4 2.9 36 86-121 3-39 (40)
8 1wr4_A Ubiquitin-protein ligas 99.0 9.4E-11 3.2E-15 76.2 2.4 33 88-120 2-35 (36)
9 2dmv_A Itchy homolog E3 ubiqui 99.0 1.2E-10 4.2E-15 79.4 2.9 36 87-122 4-40 (43)
10 1e0m_A Wwprototype; SH3 protot 99.0 1.4E-10 4.7E-15 76.0 2.6 33 89-121 2-35 (37)
11 2kyk_A E3 ubiquitin-protein li 99.0 2E-10 7E-15 76.7 3.1 34 88-121 4-38 (39)
12 2zaj_A Membrane-associated gua 99.0 2.3E-10 7.9E-15 81.0 3.2 38 85-122 8-46 (49)
13 1ymz_A CC45; artificial protei 99.0 2.1E-10 7.2E-15 77.9 2.3 36 86-121 4-40 (43)
14 2dwv_A Salvador homolog 1 prot 98.9 4.6E-10 1.6E-14 79.3 3.2 36 88-123 11-47 (49)
15 2law_A Yorkie homolog; YAP, SM 98.9 3.5E-10 1.2E-14 75.5 2.2 34 87-120 3-37 (38)
16 1wr7_A NEDD4-2; all-beta, liga 98.9 3.4E-10 1.2E-14 76.5 2.0 35 86-120 4-39 (41)
17 2ysg_A Syntaxin-binding protei 98.9 6.2E-10 2.1E-14 75.0 3.1 35 87-121 4-39 (40)
18 2ysf_A E3 ubiquitin-protein li 98.9 7.3E-10 2.5E-14 74.8 2.9 35 86-120 3-38 (40)
19 2l4j_A YES-associated protein 98.9 8.9E-10 3E-14 76.7 2.9 37 85-121 6-43 (46)
20 1i5h_W Rnedd4, ubiquitin ligas 98.8 1.2E-09 4E-14 77.3 2.9 37 86-122 7-44 (50)
21 2djy_A SMAD ubiquitination reg 98.8 1.4E-09 5E-14 74.3 3.1 36 87-122 4-40 (42)
22 2kpz_A E3 ubiquitin-protein li 98.8 1.2E-09 4E-14 76.7 2.2 37 86-122 8-45 (49)
23 2ez5_W Dnedd4, E3 ubiquitin-pr 98.8 1.5E-09 5E-14 75.5 2.6 37 86-122 6-43 (46)
24 2ysb_A Salvador homolog 1 prot 98.8 2E-09 6.8E-14 76.0 3.2 36 87-122 8-44 (49)
25 2yse_A Membrane-associated gua 98.8 2E-09 6.7E-14 79.4 1.9 37 86-122 9-46 (60)
26 2jmf_A E3 ubiquitin-protein li 98.8 3.6E-09 1.2E-13 75.8 3.2 37 85-121 13-50 (53)
27 2jx8_A Hpcif1, phosphorylated 98.7 1.3E-09 4.5E-14 77.9 0.3 34 89-122 9-44 (52)
28 1jmq_A YAP65, 65 kDa YES-assoc 98.7 9.5E-09 3.3E-13 70.6 3.2 38 85-122 3-41 (46)
29 1wmv_A WWOX, WW domain contain 98.7 1.8E-08 6.2E-13 72.4 4.8 37 86-122 7-44 (54)
30 2ysd_A Membrane-associated gua 98.7 1.2E-08 4.3E-13 74.1 3.8 37 86-122 10-47 (57)
31 3tc5_A Peptidyl-prolyl CIS-tra 98.5 2.1E-08 7.1E-13 85.0 2.1 36 88-123 7-44 (166)
32 2kxq_A E3 ubiquitin-protein li 98.4 6.5E-08 2.2E-12 74.6 2.5 36 87-122 6-42 (90)
33 2ysi_A Transcription elongatio 98.4 1E-07 3.6E-12 64.6 3.2 34 87-120 4-38 (40)
34 1e0n_A Hypothetical protein; Y 98.4 4.7E-08 1.6E-12 61.8 1.3 26 93-119 1-27 (27)
35 1tk7_A CG4244-PB; WW domain, n 98.4 6.9E-08 2.4E-12 74.2 2.2 37 86-122 8-45 (88)
36 1ywi_A Formin-binding protein 98.3 9.6E-08 3.3E-12 65.0 1.1 34 87-120 6-40 (41)
37 2kxq_A E3 ubiquitin-protein li 98.3 2.4E-07 8.3E-12 71.4 3.0 35 88-122 53-88 (90)
38 1tk7_A CG4244-PB; WW domain, n 98.3 2.6E-07 8.8E-12 71.0 2.1 33 88-120 54-87 (88)
39 2l5f_A PRE-mRNA-processing fac 98.2 4.2E-07 1.4E-11 70.4 1.9 36 87-122 8-44 (92)
40 1e0l_A Formin binding protein; 98.1 8E-07 2.7E-11 59.0 2.1 31 91-121 4-35 (37)
41 3l4h_A E3 ubiquitin-protein li 98.1 1E-06 3.5E-11 71.8 2.7 36 87-122 69-105 (109)
42 1o6w_A PRP40, PRE-mRNA process 98.1 4.1E-07 1.4E-11 67.2 0.3 33 90-122 40-73 (75)
43 2jxw_A WW domain-binding prote 97.9 4.7E-06 1.6E-10 62.1 2.1 32 89-120 42-74 (75)
44 1eg3_A Dystrophin; EF-hand lik 97.8 3.6E-06 1.2E-10 76.5 1.2 33 89-121 10-43 (261)
45 2l5f_A PRE-mRNA-processing fac 97.7 5.7E-06 2E-10 64.0 0.9 32 90-121 52-84 (92)
46 1yw5_A Peptidyl prolyl CIS/tra 97.7 1.9E-05 6.5E-10 66.6 3.2 34 89-122 6-41 (177)
47 3olm_A E3 ubiquitin-protein li 97.7 1.8E-05 6.3E-10 75.7 3.2 38 86-123 4-42 (429)
48 1o6w_A PRP40, PRE-mRNA process 97.6 1.5E-05 5.1E-10 58.8 1.4 29 93-121 2-31 (75)
49 2jxw_A WW domain-binding prote 97.5 2.9E-05 9.7E-10 57.8 1.5 29 93-121 5-34 (75)
50 2dk1_A WW domain-binding prote 97.4 5.5E-05 1.9E-09 53.8 2.3 28 94-121 8-36 (50)
51 1aqc_A X11; PTB domain; 2.30A 95.9 0.008 2.7E-07 50.8 4.6 36 228-264 6-43 (172)
52 2dk7_A Transcription elongatio 95.7 0.0034 1.2E-07 48.2 1.6 28 94-121 21-49 (73)
53 2ej8_A DCC-interacting protein 95.6 0.012 4.3E-07 48.8 4.7 34 228-266 14-47 (160)
54 2ela_A Adapter protein contain 95.2 0.017 5.9E-07 49.1 4.3 34 228-266 27-60 (175)
55 3le4_A Microprocessor complex 92.8 0.053 1.8E-06 42.2 2.4 38 85-122 23-61 (79)
56 3so6_A LDL receptor adaptor pr 92.2 0.14 4.7E-06 40.3 4.2 33 228-265 2-34 (137)
57 1n3h_A SHC transforming protei 91.7 0.18 6.2E-06 43.9 4.8 38 228-265 48-87 (207)
58 2dyq_A Amyloid beta A4 precurs 80.2 1.4 4.9E-05 37.0 3.8 31 230-265 16-46 (144)
59 4dbb_A Amyloid beta A4 precurs 79.6 1.9 6.4E-05 35.8 4.3 36 228-264 7-44 (162)
60 3f0w_A NUMB-R, NUMB-like prote 78.1 2.2 7.6E-05 35.3 4.3 33 228-265 40-72 (168)
61 2ky8_A Methyl-CPG-binding doma 71.6 1.7 5.7E-05 32.6 1.7 28 87-115 9-45 (72)
62 1ub1_A MECP2, attachment regio 69.4 4.6 0.00016 33.9 4.1 32 85-117 32-72 (133)
63 1ntv_A Disabled homolog 1; bet 63.0 7.5 0.00026 31.7 4.2 33 228-265 16-48 (152)
64 1p3r_A Disabled homolog 2; PTB 63.0 7.9 0.00027 31.9 4.3 32 228-264 15-46 (160)
65 1d9n_A Methyl-CPG-binding prot 61.0 3.9 0.00013 31.0 1.9 33 86-119 6-47 (75)
66 3l4h_A E3 ubiquitin-protein li 50.8 0.59 2E-05 38.0 -4.4 31 91-121 46-77 (109)
67 3c2i_A Methyl-CPG-binding prot 47.0 9.6 0.00033 30.3 2.2 31 85-116 18-57 (97)
68 3vxv_A Methyl-CPG-binding doma 47.0 8.5 0.00029 28.5 1.8 10 88-97 3-12 (69)
69 3suz_A Amyloid beta A4 precurs 28.8 48 0.0017 30.6 4.1 25 228-253 7-31 (388)
70 2k7i_A UPF0339 protein ATU0232 25.2 33 0.0011 26.5 1.9 22 93-114 23-44 (83)
No 1
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=99.80 E-value=2.5e-20 Score=158.56 Aligned_cols=46 Identities=52% Similarity=0.811 Sum_probs=44.0
Q ss_pred ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccCCCcccc
Q psy3534 229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIY 274 (282)
Q Consensus 229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~RnDirD~V 274 (282)
.+||||||||||||+|+||+|||||.|||+||||||++|+|++|..
T Consensus 2 ~~~F~Vr~LG~vEv~e~~~~p~r~s~~v~~~ir~L~~~~~~~~d~~ 47 (148)
T 3d8d_A 2 IKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPM 47 (148)
T ss_dssp CEEEEEEEEEEEECCGGGGSTTTHHHHHHHHHHHHTTCCCCCCCTT
T ss_pred ceeEEeeecccEEEecccCCccccHHHHHHHHHHHHhccccccccc
Confidence 4799999999999999999999999999999999999999999954
No 2
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=99.69 E-value=8.4e-18 Score=123.04 Aligned_cols=47 Identities=43% Similarity=0.864 Sum_probs=43.2
Q ss_pred CCCccccCCCCCCCCCCCCCccccccCCcCEEEEeeCCCcccCCCCCC
Q psy3534 75 SPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 75 ~d~iw~~~~~~~~~~~LPPGWer~sds~G~YYwhv~Tg~tQWe~P~~~ 122 (282)
+++||++|. ++.+.+|||||+++.|.+|+|||||.||+|||++|+..
T Consensus 5 ~~~~w~~~~-~~~~~~LPpGW~~~~D~sGtYY~h~~T~tTQWerP~~~ 51 (55)
T 2e45_A 5 SDSFWNPNA-FETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRA 51 (55)
T ss_dssp -CCTTCSST-TCSCSCCCTTEEEEEETTEEEEEETTTCCEESSCCCCC
T ss_pred ccccccccc-ccCCCCCCCCCeEeecCCCCEEEEcCCCCCccCCCCCC
Confidence 469999955 99999999999999999999999999999999999764
No 3
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=99.23 E-value=3.6e-12 Score=86.63 Aligned_cols=36 Identities=42% Similarity=1.027 Sum_probs=32.1
Q ss_pred CCCCCCCCCccccccCCcCEEEEeeCCCcccCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G~YYwhv~Tg~tQWe~P~~ 121 (282)
..+..||+|||+..+.+|.||||+.|++|||++|++
T Consensus 4 ~~~~~LP~GWe~~~~~~G~YY~n~~t~~tqWe~P~~ 39 (39)
T 2ysc_A 4 GSSGGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 39 (39)
T ss_dssp CCCCCCCTTEEEEEETTEEEEEESSSCCEESSCCCC
T ss_pred CCCCCCCCCcEEEEcCCCCEEEEcCCCCEeccCCCC
Confidence 456789999998888779999999999999999974
No 4
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=99.21 E-value=3.9e-12 Score=86.15 Aligned_cols=34 Identities=50% Similarity=1.111 Sum_probs=30.0
Q ss_pred CCCCCCccccccCCcCEEEEeeCCCcccCCCCCC
Q psy3534 89 EQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 89 ~~LPPGWer~sds~G~YYwhv~Tg~tQWe~P~~~ 122 (282)
..||+|||+..+..|+||||+.|++|||++|+.+
T Consensus 2 ~~LP~GWe~~~d~~g~YY~n~~t~~tqWe~P~~~ 35 (38)
T 2ho2_A 2 SDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRA 35 (38)
T ss_dssp CCSCTTEEEEECSSCEEEEETTTTEEESSCCCC-
T ss_pred CcCCCCceEEEeCCCCEEEecCCCCEeccCCCCC
Confidence 4699999977777889999999999999999864
No 5
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=99.08 E-value=4.2e-11 Score=78.50 Aligned_cols=33 Identities=39% Similarity=0.762 Sum_probs=30.2
Q ss_pred CCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
...||+||++..+..| +||+|+.|++|||++|.
T Consensus 2 ~~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSCSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 4579999998888899 99999999999999996
No 6
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=99.04 E-value=7.2e-11 Score=85.00 Aligned_cols=35 Identities=31% Similarity=0.746 Sum_probs=30.2
Q ss_pred CCCCCCCcccc-ccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 88 EEQLPPGWERH-EDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 88 ~~~LPPGWer~-sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
+..||+||+.. +++.| +||+|+.||+|||++|+..
T Consensus 5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 56799999954 55689 9999999999999999864
No 7
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.03 E-value=9.6e-11 Score=78.36 Aligned_cols=36 Identities=25% Similarity=0.583 Sum_probs=32.3
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
..+..||+||++..+..| +||+|+.|++|||++|..
T Consensus 3 ~~~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 3 SGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CCCSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 456789999998888899 999999999999999964
No 8
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=99.02 E-value=9.4e-11 Score=76.24 Aligned_cols=33 Identities=33% Similarity=0.666 Sum_probs=30.3
Q ss_pred CCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
+..||+||+...+.+| +||+|+.|++|||++|.
T Consensus 2 ~~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp CTTCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 4679999998888899 99999999999999996
No 9
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=79.45 Aligned_cols=36 Identities=33% Similarity=0.621 Sum_probs=32.5
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.+..||+||++..+..| +||+|+.|++|||++|..+
T Consensus 4 ~~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 4 GSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp SCCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence 45789999998888899 9999999999999999865
No 10
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=99.00 E-value=1.4e-10 Score=76.01 Aligned_cols=33 Identities=30% Similarity=0.779 Sum_probs=30.0
Q ss_pred CCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 89 EQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 89 ~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
..||+||+...+..| +||+|+.|++|||++|..
T Consensus 2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CCSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 479999997777889 999999999999999975
No 11
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=76.65 Aligned_cols=34 Identities=41% Similarity=0.703 Sum_probs=30.6
Q ss_pred CCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
...||+||+...+.+| +||+|+.|++|||++|..
T Consensus 4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp SCCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 3579999998788899 999999999999999974
No 12
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=80.99 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=33.7
Q ss_pred CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.+....||+|||+..+..| +||+|+.|++|||++|..+
T Consensus 8 ~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~ 46 (49)
T 2zaj_A 8 LDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP 46 (49)
T ss_dssp CCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred cCCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence 4566789999997777889 9999999999999999875
No 13
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.95 E-value=2.1e-10 Score=77.90 Aligned_cols=36 Identities=36% Similarity=0.827 Sum_probs=30.7
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
+....||+||++..+.+| +||+|+.|++|||++|..
T Consensus 4 e~~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~ 40 (43)
T 1ymz_A 4 GRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTI 40 (43)
T ss_dssp ---CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCS
T ss_pred ccCCCCCCCCEEEECCCCCEEEEECCCCCCcccCCcc
Confidence 345689999998888899 999999999999999975
No 14
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.93 E-value=4.6e-10 Score=79.30 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=32.2
Q ss_pred CCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTY 123 (282)
Q Consensus 88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~~ 123 (282)
...||+|||+..+..| +||+|+.|++|||++|..++
T Consensus 11 ~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~s 47 (49)
T 2dwv_A 11 REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPS 47 (49)
T ss_dssp SSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCCS
T ss_pred CCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCCC
Confidence 4679999998788888 99999999999999998753
No 15
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.91 E-value=3.5e-10 Score=75.52 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=29.6
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
....||+|||+..+.+| +||.|+.|++|||++|.
T Consensus 3 ~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 3 MEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp --CCCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred ccCCCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 34679999997777899 99999999999999995
No 16
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.91 E-value=3.4e-10 Score=76.53 Aligned_cols=35 Identities=29% Similarity=0.675 Sum_probs=31.3
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
..+..||+||+...+.+| +||+|+.|++|||++|.
T Consensus 4 ~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 4 GIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CCCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 456789999997777889 99999999999999995
No 17
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.90 E-value=6.2e-10 Score=75.02 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=31.1
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
....||+|||+..+..| +||.|+.|++|||++|..
T Consensus 4 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~ 39 (40)
T 2ysg_A 4 GSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39 (40)
T ss_dssp SSSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred CcCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence 45679999997777899 999999999999999963
No 18
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.88 E-value=7.3e-10 Score=74.81 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=31.2
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
..+..||+|||+..+.+| +||.|+.|++|||++|.
T Consensus 3 ~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCCCCCCSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred CCcCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 356789999997777899 99999999999999996
No 19
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.87 E-value=8.9e-10 Score=76.71 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=32.7
Q ss_pred CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
......||+|||+..+.+| +||.|+.|++|||++|..
T Consensus 6 ~~~~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~ 43 (46)
T 2l4j_A 6 SPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43 (46)
T ss_dssp STTTSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred CCcCCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence 4566789999997777899 999999999999999974
No 20
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.84 E-value=1.2e-09 Score=77.27 Aligned_cols=37 Identities=27% Similarity=0.624 Sum_probs=32.2
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.....||+|||+..+..| +||+|+.|++|||++|...
T Consensus 7 ~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp SCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred ccCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence 345679999997777889 9999999999999999864
No 21
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.83 E-value=1.4e-09 Score=74.35 Aligned_cols=36 Identities=31% Similarity=0.633 Sum_probs=31.4
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
....||+|||+..+.+| +||.|+.|++|||++|...
T Consensus 4 ~~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~ 40 (42)
T 2djy_A 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 40 (42)
T ss_dssp CCSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CcCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence 34579999997677899 9999999999999999754
No 22
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.82 E-value=1.2e-09 Score=76.68 Aligned_cols=37 Identities=24% Similarity=0.590 Sum_probs=30.2
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.....||+|||...+.+| +||+|+.|++|||++|...
T Consensus 8 ~~~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 8 IEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp ----CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred ccCCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence 456789999997777889 9999999999999999764
No 23
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.82 E-value=1.5e-09 Score=75.51 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=32.3
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
..+..||+|||+..+.+| +||.|+.|++|||++|...
T Consensus 6 ~~~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~ 43 (46)
T 2ez5_W 6 GEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43 (46)
T ss_dssp CCSCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTTC
T ss_pred CCCCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCC
Confidence 455679999997777889 9999999999999999753
No 24
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.81 E-value=2e-09 Score=76.01 Aligned_cols=36 Identities=28% Similarity=0.515 Sum_probs=31.7
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.+..||+|||+..+..| +||+|+.|++|||++|...
T Consensus 8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~ 44 (49)
T 2ysb_A 8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44 (49)
T ss_dssp CCCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence 45679999997777889 9999999999999999864
No 25
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2e-09 Score=79.38 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=32.6
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
+....||+|||+..+..| +||+|+.|++|||++|...
T Consensus 9 d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp CCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred CCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence 456789999997788889 9999999999999999753
No 26
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.76 E-value=3.6e-09 Score=75.82 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=32.4
Q ss_pred CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
......||+|||...+.+| +||.|+.|++|||++|..
T Consensus 13 ~~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 13 LINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp TTSCSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred cCcCCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 4556789999996677899 999999999999999974
No 27
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.73 E-value=1.3e-09 Score=77.89 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=29.8
Q ss_pred CCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 89 EQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 89 ~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
..||+||+ +.+.+.| .||||+.||++|||+|..+
T Consensus 9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 56999999 5556789 9999999999999999865
No 28
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=98.68 E-value=9.5e-09 Score=70.58 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=33.8
Q ss_pred CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
++.+..||+||+...+..| .||+++.|++|||++|...
T Consensus 3 ~P~~~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp CCSSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTS
T ss_pred CCCCCCCCcCcEEEEcCCCceEEEEecCCceeecCCCch
Confidence 5677889999997777889 9999999999999999754
No 29
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=98.68 E-value=1.8e-08 Score=72.36 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=32.1
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.....||+|||...+.+| +||.|+.|++|||++|...
T Consensus 7 ~~~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~ 44 (54)
T 1wmv_A 7 RVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLA 44 (54)
T ss_dssp CCSSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSS
T ss_pred CcCCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCc
Confidence 345579999997777889 9999999999999999865
No 30
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.67 E-value=1.2e-08 Score=74.10 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=32.2
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.....||+|||+..+..| +||.|+.|++|||++|...
T Consensus 10 ~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 10 DNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp SCCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 445679999996677889 9999999999999999864
No 31
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=98.54 E-value=2.1e-08 Score=84.97 Aligned_cols=36 Identities=36% Similarity=0.717 Sum_probs=26.6
Q ss_pred CCCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534 88 EEQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFTY 123 (282)
Q Consensus 88 ~~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~~ 123 (282)
...|||||+ +++++.| +||+|+.|++|||++|+.+.
T Consensus 7 ~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~~ 44 (166)
T 3tc5_A 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNS 44 (166)
T ss_dssp ---CCTTEEEEECTTTCCEEEEETTTCCEESSCC----
T ss_pred CCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCCc
Confidence 457999999 5555799 99999999999999998764
No 32
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=98.44 E-value=6.5e-08 Score=74.58 Aligned_cols=36 Identities=25% Similarity=0.616 Sum_probs=31.9
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
....||+||++..+..| +||+|+.|++|||++|...
T Consensus 6 ~~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~ 42 (90)
T 2kxq_A 6 SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVP 42 (90)
T ss_dssp SCCSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSC
T ss_pred CCCCCCCCcEEEECCCCCEEEEECCCCeEeeeccccc
Confidence 34579999998888899 9999999999999999754
No 33
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.44 E-value=1e-07 Score=64.56 Aligned_cols=34 Identities=18% Similarity=0.453 Sum_probs=30.9
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
....+|++|..+.+..| .||+|+.|+++|||+|.
T Consensus 4 ~~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 4 GSSGTEEIWVENKTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp CCCCCCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred ccCCCCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 45678999998889999 99999999999999996
No 34
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.44 E-value=4.7e-08 Score=61.79 Aligned_cols=26 Identities=38% Similarity=0.887 Sum_probs=24.7
Q ss_pred CCccccccCCc-CEEEEeeCCCcccCCC
Q psy3534 93 PGWERHEDNDG-PYYWHIKSGTIQRDPP 119 (282)
Q Consensus 93 PGWer~sds~G-~YYwhv~Tg~tQWe~P 119 (282)
+||+ +..++| .||+|..||++||++|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 6999 889999 9999999999999998
No 35
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=98.42 E-value=6.9e-08 Score=74.15 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=32.2
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.....||+||++..+..| +||+|+.|++|||++|...
T Consensus 8 ~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~ 45 (88)
T 1tk7_A 8 DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ 45 (88)
T ss_dssp STTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCT
T ss_pred CccCCCCCCcEEEECCCCCEEEEECCCCCeEeeccccc
Confidence 344579999997778899 9999999999999999764
No 36
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.34 E-value=9.6e-08 Score=64.97 Aligned_cols=34 Identities=21% Similarity=0.562 Sum_probs=25.9
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
....+|++|+.+.+..| .||+|+.|+++||++|.
T Consensus 6 ~~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 6 SVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp ------CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred cCCCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 34567999998888899 99999999999999995
No 37
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=98.32 E-value=2.4e-07 Score=71.37 Aligned_cols=35 Identities=31% Similarity=0.618 Sum_probs=31.3
Q ss_pred CCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
...||+|||...+..| +||.|+.|++|||++|...
T Consensus 53 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 53 LGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS 88 (90)
T ss_dssp TCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred ccccCCCceEEECCCCCEEEEECCCCcEecCCCCcC
Confidence 4579999998788889 9999999999999999764
No 38
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=98.27 E-value=2.6e-07 Score=70.96 Aligned_cols=33 Identities=27% Similarity=0.606 Sum_probs=30.2
Q ss_pred CCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
...||+||++..+..| +||.|+.|++|||++|.
T Consensus 54 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 54 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp SCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred ccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 4679999998888889 99999999999999995
No 39
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.19 E-value=4.2e-07 Score=70.42 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
....||+||+++.+.+| +||+|+.||++||++|...
T Consensus 8 ~~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~ 44 (92)
T 2l5f_A 8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL 44 (92)
T ss_dssp STTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGG
T ss_pred cCCCCCCCcEEEEcCCCCEEEEECCCCceecccCccc
Confidence 45679999998888899 9999999999999999753
No 40
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.14 E-value=8e-07 Score=59.02 Aligned_cols=31 Identities=19% Similarity=0.464 Sum_probs=27.5
Q ss_pred CCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 91 LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
..++|..+.+.+| .||+|+.|+++|||+|..
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~ 35 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQE 35 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSS
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCc
Confidence 5679998888889 999999999999999963
No 41
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=98.11 E-value=1e-06 Score=71.84 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=32.1
Q ss_pred CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
....||+|||...+.+| +||.++.|++|||++|..+
T Consensus 69 ~~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~ 105 (109)
T 3l4h_A 69 TRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP 105 (109)
T ss_dssp TTSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred CCCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence 45679999998788899 9999999999999999865
No 42
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.11 E-value=4.1e-07 Score=67.19 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=30.2
Q ss_pred CCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 90 QLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 90 ~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
.||+||+.+.+..| +||+|+.|++|||++|..+
T Consensus 40 ~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~ 73 (75)
T 1o6w_A 40 LRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE 73 (75)
T ss_dssp HHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence 58999998888889 9999999999999999764
No 43
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=97.86 E-value=4.7e-06 Score=62.10 Aligned_cols=32 Identities=22% Similarity=0.615 Sum_probs=29.3
Q ss_pred CCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534 89 EQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120 (282)
Q Consensus 89 ~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~ 120 (282)
..||+||+.+.+..| +||+|..|+++||++|.
T Consensus 42 ~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~ 74 (75)
T 2jxw_A 42 TAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD 74 (75)
T ss_dssp SSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred cCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence 468999998888899 99999999999999996
No 44
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=97.84 E-value=3.6e-06 Score=76.49 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=30.2
Q ss_pred CCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 89 EQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 89 ~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
..||+|||+..+.+| +||-++.|++|||++|..
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~ 43 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKM 43 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCch
Confidence 579999997777899 999999999999999974
No 45
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=97.75 E-value=5.7e-06 Score=64.01 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=28.9
Q ss_pred CCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 90 QLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 90 ~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
.||.||+.+.+..| +||+|+.|++|||++|..
T Consensus 52 ~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~ 84 (92)
T 2l5f_A 52 LSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKE 84 (92)
T ss_dssp HHSCSEEEEECTTCCEEEEETTTTEEESCCCHH
T ss_pred ccccceEEEECCCCCEEEEECCCCCeeccCchh
Confidence 47899998888899 999999999999999964
No 46
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=97.68 E-value=1.9e-05 Score=66.62 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=31.5
Q ss_pred CCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 89 EQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 89 ~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
..||+||+ +++++.| .||++..|+.++|++|..+
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~v 41 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTTC
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCcccC
Confidence 56999999 9999999 9999999999999999864
No 47
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=97.66 E-value=1.8e-05 Score=75.69 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=32.7
Q ss_pred CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTY 123 (282)
Q Consensus 86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~~ 123 (282)
.....||||||...+.+| +||-++.|++|||++|..++
T Consensus 4 ~~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~~ 42 (429)
T 3olm_A 4 SQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPS 42 (429)
T ss_dssp -CCCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSCC
T ss_pred ccCCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCCc
Confidence 345679999996667899 99999999999999998765
No 48
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=97.61 E-value=1.5e-05 Score=58.78 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=26.6
Q ss_pred CCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 93 PGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 93 PGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
+||+...+.+| +||+|+.|+++||++|..
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~ 31 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKE 31 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHH
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchh
Confidence 58998888899 999999999999999964
No 49
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=97.49 E-value=2.9e-05 Score=57.84 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=26.8
Q ss_pred CCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 93 PGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 93 PGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
.||+++.+..| +||+|+.||++||++|..
T Consensus 5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~~ 34 (75)
T 2jxw_A 5 GRWVEGITSEGYHYYYDLISGASQWEKPEG 34 (75)
T ss_dssp CCEEEEEETTTEEEEEETTTTEEECSCCSS
T ss_pred CCcEEEECCCCCEEEEECCCCCEeecCCCc
Confidence 58998888889 999999999999999975
No 50
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.43 E-value=5.5e-05 Score=53.76 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=25.0
Q ss_pred CccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 94 GWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 94 GWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
.|..+....| .||+|+.|+++|||+|..
T Consensus 8 ~W~e~~s~~G~~YYyN~~T~eS~WekP~~ 36 (50)
T 2dk1_A 8 RWVEGITSEGYHYYYDLISGASQWEKPEG 36 (50)
T ss_dssp CEEECCCSTTCCCEEESSSCCEESSCCTT
T ss_pred CeEEEECCCCCEEEEECCCCCEEeeCChh
Confidence 5987777789 999999999999999975
No 51
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Probab=95.86 E-value=0.008 Score=50.80 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=27.9
Q ss_pred cceEeEEeeeceeeeccccCCCcchhHH--HHHHHHHhh
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSKA--VNKCIVDLS 264 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvA--VNnCIrQLS 264 (282)
++++|.||.|||+||. +.-.++.+++. +..||+.|-
T Consensus 6 ~Gv~f~vkYLGs~eV~-~~~g~~~~~R~~~~~eAi~rl~ 43 (172)
T 1aqc_A 6 DGIIFAANYLGSTQLL-SDKTPSKNVRMMQAQEAVSRIK 43 (172)
T ss_dssp TCEEEEEEEEEEEEEE-CCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeceEEEec-CCCCCCcchhHHHHHHHHHHHH
Confidence 4579999999999999 45688887743 666666663
No 52
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.70 E-value=0.0034 Score=48.17 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=26.1
Q ss_pred CccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 94 GWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 94 GWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
-|-.+....| +||||..|++++|++|..
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~e 49 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTRLSMWDRPDD 49 (73)
T ss_dssp SCEEEEESSSCEEEEETTTTEECSSCCTT
T ss_pred CcEEEECCCCCEEEecCcccceeccCChH
Confidence 3999999999 999999999999999975
No 53
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=95.57 E-value=0.012 Score=48.79 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=29.3
Q ss_pred cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcc
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLG 266 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~ 266 (282)
-.++|.||.|||+|+.+. |+..++..||++|-..
T Consensus 14 ~~~~f~vkYLGs~eV~~~-----~g~~~~~~Ai~~l~~~ 47 (160)
T 2ej8_A 14 LHQLFIVRFLGSMEVKSD-----DHPDVVYETMRQILAA 47 (160)
T ss_dssp CEEEEEEEEEEEEEECCC-----SCTHHHHHHHHHHHHH
T ss_pred cccEEEEEeeeEEEeCCC-----CCHHHHHHHHHHHHHh
Confidence 357999999999999863 7888999999999754
No 54
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=95.16 E-value=0.017 Score=49.05 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=29.4
Q ss_pred cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcc
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLG 266 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~ 266 (282)
-.++|.||.|||+|+.+ .|+..++..||++|...
T Consensus 27 ~~~~f~vkYLGs~eV~~-----~~g~~v~~eAi~~l~~~ 60 (175)
T 2ela_A 27 LHQLFIVRFLGSMEVKS-----DDHPDVVYETMRQILAA 60 (175)
T ss_dssp CCEEEEEEEEEEEEECS-----CCSTHHHHHHHHHHHHH
T ss_pred ccceEEEEcceEEEecC-----CCCHHHHHHHHHHHHHh
Confidence 35799999999999986 38888999999999754
No 55
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=92.81 E-value=0.053 Score=42.16 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=32.9
Q ss_pred CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534 85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122 (282)
Q Consensus 85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~ 122 (282)
......||.||-.+.-.+| .-|+|..|+-..|-+|---
T Consensus 23 ~~~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 23 RPPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp -CCCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred CCcCCcCCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence 3455679999999999999 9999999999999999653
No 56
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=92.24 E-value=0.14 Score=40.30 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=28.5
Q ss_pred cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL 265 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy 265 (282)
++++|.|+.||+++|.+. +...+++++|+.|-.
T Consensus 2 ~g~~f~v~YLGs~~v~~~-----~g~~~~~~Av~~l~~ 34 (137)
T 3so6_A 2 EGMVFSLKYLGMTLVERP-----KGEELSAAAVKRIVA 34 (137)
T ss_dssp CCEEEEEEEEEEEEESSS-----CCHHHHHHHHHHHHH
T ss_pred CccEEEEEEeeEEEecCC-----CChhHHHHHHHHHHH
Confidence 568999999999999874 678889999999854
No 57
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A*
Probab=91.73 E-value=0.18 Score=43.91 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=32.9
Q ss_pred cceEeEEeeeceeeeccc--cCCCcchhHHHHHHHHHhhc
Q psy3534 228 KLIRFAVRSLGWVEISEH--DLTPERSSKAVNKCIVDLSL 265 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEE--DLaPGKSSvAVNnCIrQLSy 265 (282)
+.+.|.|+.||+|||.+. .|..++-.-.+..||+.|-.
T Consensus 48 ~gv~f~vkYLGs~eV~~~~r~~~~~~g~~v~~eAi~rv~~ 87 (207)
T 1n3h_A 48 PGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCE 87 (207)
T ss_dssp TCEEEEEEEECEEECCCCSSCSSSCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEecceEEeccccccCCccchHHHHHHHHHHHHH
Confidence 567999999999999976 78888888888999999864
No 58
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=80.19 E-value=1.4 Score=36.95 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=27.4
Q ss_pred eEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL 265 (282)
Q Consensus 230 ~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy 265 (282)
.+|.|..||+||++. -+.--.||.+|+.|-.
T Consensus 16 ~~f~~kyLGsv~V~~-----~~G~dVln~Ai~~l~~ 46 (144)
T 2dyq_A 16 QKYEALYMGTLPVTK-----AMGMDVLNEAIGTLTA 46 (144)
T ss_dssp CCCEEEEEEEEEESS-----SCCHHHHHHHHHHHHC
T ss_pred hEEEEEEeccEEecC-----ccCHHHHHHHHHHHHh
Confidence 489999999999998 5778999999999943
No 59
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=79.56 E-value=1.9 Score=35.83 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=25.6
Q ss_pred cceEeEEeeeceeeeccccCCCcchhH--HHHHHHHHhh
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSK--AVNKCIVDLS 264 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSv--AVNnCIrQLS 264 (282)
..+.|.||.||++|+. +.=.++.+.+ .+..||+.|-
T Consensus 7 ~Gv~F~vkYLGs~eV~-s~r~~~~~~r~~~~~eAi~ri~ 44 (162)
T 4dbb_A 7 DGIIFAANYLGSTQLL-SDKTPSKNVRMMQAQEAVSRIK 44 (162)
T ss_dssp CEEEEEEEEEEEEEEE-ESSCCCHHHHHHHHHHHHHTCC
T ss_pred CCcEEEeEEEeEEEEc-CCCCCCcchhHHHHHHHHHHHH
Confidence 5689999999999998 3445554432 3467777664
No 60
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=78.08 E-value=2.2 Score=35.33 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=27.2
Q ss_pred cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL 265 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy 265 (282)
..+.|.|+.||.+||.+. +..-+++.||+.|--
T Consensus 40 g~~~f~vkYLGs~~V~~~-----~g~~~~~~Ai~~lk~ 72 (168)
T 3f0w_A 40 GTCSFPVRYLGHVEVEES-----RGMHVCEDAVKKLKA 72 (168)
T ss_dssp TCEEEEEEEEEEEEESCS-----CCHHHHHHHHHHHHT
T ss_pred CceEEEEEEeeEEEECCC-----CCHHHHHHHHHHHHh
Confidence 345899999999999882 567889999999843
No 61
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=71.63 E-value=1.7 Score=32.61 Aligned_cols=28 Identities=39% Similarity=0.860 Sum_probs=16.7
Q ss_pred CCCCCCCCccccc--cCC----c---CEEEEeeCCCcc
Q psy3534 87 AEEQLPPGWERHE--DND----G---PYYWHIKSGTIQ 115 (282)
Q Consensus 87 ~~~~LPPGWer~s--ds~----G---~YYwhv~Tg~tQ 115 (282)
..+.||+||+|.. +.+ | +||+. |+|+--
T Consensus 9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~s-P~Gkr~ 45 (72)
T 2ky8_A 9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKF 45 (72)
T ss_dssp ECSSSCTTCEEEEEECCSSTTTTCEEEEEEC-TTCCEE
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEEC-CCCCEe
Confidence 4568999998332 443 3 67764 455433
No 62
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=69.40 E-value=4.6 Score=33.91 Aligned_cols=32 Identities=28% Similarity=0.633 Sum_probs=18.9
Q ss_pred CCCCCCCCCCccc--cccCC----c---CEEEEeeCCCcccC
Q psy3534 85 VEAEEQLPPGWER--HEDND----G---PYYWHIKSGTIQRD 117 (282)
Q Consensus 85 ~~~~~~LPPGWer--~sds~----G---~YYwhv~Tg~tQWe 117 (282)
...++.||+||+| +.+.+ | +||+. ++|+--.-
T Consensus 32 ~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~S-P~GKkfRS 72 (133)
T 1ub1_A 32 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFRS 72 (133)
T ss_dssp SSCCCCBTTBCEEEEEECCCSSSCCSEEEEEEC-TTSCEESS
T ss_pred ccCCCCCCCCCEEEEEEecCCCCCCceeEEEEC-CCCCeeeC
Confidence 3456789999983 22444 3 67764 34554433
No 63
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=63.04 E-value=7.5 Score=31.67 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=24.8
Q ss_pred cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL 265 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy 265 (282)
+.+.|.|+.||.+|+.+. |....+-.+|+.|-.
T Consensus 16 ~gv~f~vkYLGs~eV~~~-----~g~~v~~eA~~~i~~ 48 (152)
T 1ntv_A 16 EGVRYKAKLIGIDEVSAA-----RGDKLCQDSMMKLKG 48 (152)
T ss_dssp TCEEEEEEEEEEEECSSS-----CCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCeEEecCC-----CCchHHHHHHHHHHH
Confidence 457999999999999874 345556677777654
No 64
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=63.02 E-value=7.9 Score=31.90 Aligned_cols=32 Identities=13% Similarity=0.389 Sum_probs=24.1
Q ss_pred cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhh
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLS 264 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLS 264 (282)
+.+.|.|+.||.+|+.+. |+...+-.+|+.|-
T Consensus 15 ~gv~f~vkYLGs~~V~~~-----~g~~~~~eA~~~i~ 46 (160)
T 1p3r_A 15 DGVKYKAKLIGIDDVPDA-----RGDKMSQDSMMKLK 46 (160)
T ss_dssp TCEEEEEEEEEEEEESSS-----CCHHHHHHHHHHHH
T ss_pred CCeEEEEEeceeEEecCC-----CChHHHHHHHHHHH
Confidence 347999999999999874 55656666666664
No 65
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=61.05 E-value=3.9 Score=30.96 Aligned_cols=33 Identities=33% Similarity=0.612 Sum_probs=19.7
Q ss_pred CCCCCCCCCccccc--cCC----c---CEEEEeeCCCcccCCC
Q psy3534 86 EAEEQLPPGWERHE--DND----G---PYYWHIKSGTIQRDPP 119 (282)
Q Consensus 86 ~~~~~LPPGWer~s--ds~----G---~YYwhv~Tg~tQWe~P 119 (282)
...+.||+||+|.. +.+ | +||+. +||+--.-.+
T Consensus 6 ~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~s-P~Gkk~RS~~ 47 (75)
T 1d9n_A 6 LDCPALGPGWKRREVFRKSGATCGRSDTYYQS-PTGDRIRSKV 47 (75)
T ss_dssp EECTTTCSSCEEEECSSSSSCTTCCCCEEEEC-SSSCEECSTH
T ss_pred ccCCCCCCCCEEEEEEecCCCCCCceEEEEEC-CCCCeeecHH
Confidence 35688999998332 333 3 56664 3666554443
No 66
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=50.78 E-value=0.59 Score=38.02 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=24.6
Q ss_pred CCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF 121 (282)
Q Consensus 91 LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~ 121 (282)
+|.|||+..++.| +||.++.+.+..=.+|.|
T Consensus 46 ~p~~we~~~~~~~lV~~vn~~~d~~~pLP~GW 77 (109)
T 3l4h_A 46 DARNFERYQHNRDLVNFINMFADTRLELPRGW 77 (109)
T ss_dssp CTHHHHHHTTCHHHHHHHHTTCCTTSCCCTTE
T ss_pred CCcChhhhcCcCCceEEeccCCCCCCCCCCCC
Confidence 6999999999999 999999886544444444
No 67
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=47.02 E-value=9.6 Score=30.30 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=18.3
Q ss_pred CCCCCCCCCCccc--cccCC----c---CEEEEeeCCCccc
Q psy3534 85 VEAEEQLPPGWER--HEDND----G---PYYWHIKSGTIQR 116 (282)
Q Consensus 85 ~~~~~~LPPGWer--~sds~----G---~YYwhv~Tg~tQW 116 (282)
.-.++.||+||++ +.+.+ | +||+. +||+--.
T Consensus 18 ~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~s-P~GkkfR 57 (97)
T 3c2i_A 18 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFR 57 (97)
T ss_dssp CCCCTTSCTTCEEEEEECCSSTTTTCEEEEEEC-TTSCEEC
T ss_pred ccCCCCCCCCCEEEEEEecCCCCCCcceEEEEC-CCCCEEE
Confidence 3456789999983 22444 3 67764 3554443
No 68
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=47.00 E-value=8.5 Score=28.54 Aligned_cols=10 Identities=50% Similarity=1.225 Sum_probs=7.5
Q ss_pred CCCCCCCccc
Q psy3534 88 EEQLPPGWER 97 (282)
Q Consensus 88 ~~~LPPGWer 97 (282)
-..||+||+|
T Consensus 3 ~~plp~GW~R 12 (69)
T 3vxv_A 3 HKPVPCGWER 12 (69)
T ss_dssp -CCSCTTCEE
T ss_pred CCcCCCCCEE
Confidence 3579999993
No 69
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=28.75 E-value=48 Score=30.56 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred cceEeEEeeeceeeeccccCCCcchh
Q psy3534 228 KLIRFAVRSLGWVEISEHDLTPERSS 253 (282)
Q Consensus 228 ~~~~FAVRSLGWVEmaEEDLaPGKSS 253 (282)
+++.|+|+.||-+|+. ..=.|-+++
T Consensus 7 ~gv~f~~kylG~~~v~-s~~~~~~~~ 31 (388)
T 3suz_A 7 DGIIFAANYLGSTQLL-SERNPSKNI 31 (388)
T ss_dssp HCEEEEEEEEEEEEEE-ECSSCCHHH
T ss_pred CCcEEeeeEeeeeecc-CCCCCCccc
Confidence 4589999999999998 444555555
No 70
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=25.23 E-value=33 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=17.9
Q ss_pred CCccccccCCcCEEEEeeCCCc
Q psy3534 93 PGWERHEDNDGPYYWHIKSGTI 114 (282)
Q Consensus 93 PGWer~sds~G~YYwhv~Tg~t 114 (282)
.|||...+..|.|||++..+..
T Consensus 23 agFEi~k~~~Gq~rFrLkA~NG 44 (83)
T 2k7i_A 23 YKFEIYQDKAGEYRFRFKASNG 44 (83)
T ss_dssp CEEEEEECTTSCEEEEECCTTS
T ss_pred ccEEEEEcCCCCEEEEEEECCC
Confidence 3599999999999999965443
Done!