RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3534
(282 letters)
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta
structure, phosphotyrosine binding domain; 2.20A {Homo
sapiens} PDB: 3d8e_A 3d8f_A
Length = 148
Score = 67.8 bits (165), Expect = 3e-14
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 232 FAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268
FAVRSLGWVE++E +L P RSS AVN CI LS +N
Sbjct: 5 FAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKN 41
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 58.1 bits (140), Expect = 6e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 84 SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEF 121
S + LPPGW + D G YYWH+ SG+ Q P +
Sbjct: 2 SSGSSGGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 39
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo sapiens}
SCOP: b.72.1.1
Length = 55
Score = 55.1 bits (132), Expect = 1e-10
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 83 SSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPE 120
++ E + LP GW R +D G YYWHI +GT Q +PP
Sbjct: 12 NAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPG 49
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW
domain, beta sheet, Fe65, protein binding; 1.33A {Homo
sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 54.3 bits (130), Expect = 2e-10
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 91 LPPGWERHEDNDGPYYWHIKSGTIQRDPPE 120
LP GW R +D G YYWHI +GT Q +PP
Sbjct: 4 LPAGWMRVQDTSGTYYWHIPTGTTQWEPPG 33
Score = 36.2 bits (83), Expect = 5e-04
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 137 ETVNNDGPYYWHIKSGTIQRDPPE 160
+ G YYWHI +GT Q +PP
Sbjct: 10 RVQDTSGTYYWHIPTGTTQWEPPG 33
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 42.3 bits (99), Expect = 9e-06
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG-P 144
W H+ DG YY++ ++ + P+ E E ++ G
Sbjct: 8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKT 67
Query: 145 YYWHIKSGTIQRDPPE 160
YY++ ++ + P+
Sbjct: 68 YYYNSQTKESRWAKPK 83
Score = 27.7 bits (61), Expect = 1.4
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 81 TLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120
L + + W+ ++ + G YY++ ++ + P+
Sbjct: 43 DLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPK 83
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 40.4 bits (94), Expect = 3e-05
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG-PYYWH 148
W ++G YY+ + SG Q + PE G + E ++ DG YY++
Sbjct: 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYN 62
Query: 149 IKSGTIQRDPPE 160
++G + + P+
Sbjct: 63 TETGESRWEKPD 74
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 38.7 bits (90), Expect = 1e-04
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 94 GWERHEDNDG-PYYWHIKSGTIQ-RDPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKS 151
W+ +D G YY++ + P E + A + YY++ +
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62
Query: 152 GTIQRDPPE 160
P
Sbjct: 63 RETSWTIPA 71
Score = 32.2 bits (73), Expect = 0.028
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 82 LSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120
L S E GW+ + DG YY++ + P
Sbjct: 32 LISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPA 71
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 38.7 bits (90), Expect = 2e-04
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDA-----ETVN 140
+ LP G+E+ G Y+ H ++G P + +
Sbjct: 6 SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNT 65
Query: 141 NDG-PYYWHIKSGTIQRDPP 159
G Y+ + T Q P
Sbjct: 66 ATGRVYFVDHNNRTTQFTDP 85
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 36.3 bits (85), Expect = 4e-04
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LPPGWE DN G YY + + + Q P
Sbjct: 1 GSPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 35.7 bits (83), Expect = 6e-04
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 84 SVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122
S LPPGWER D +G YY+++++ T + P
Sbjct: 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 35.4 bits (82), Expect = 9e-04
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LPPGW+ + G YY + + + P
Sbjct: 4 GSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERP 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 38/117 (32%)
Query: 16 TYYE------KPTPPRTLS-LSEKASCTPA--------QGASIPHVPGDLNNDLYAVPVK 60
Y +P ++ S L A QG + + +L DLY
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELR-DLYQTY-- 180
Query: 61 LRGASPLPPLLADLSPSLSSTL-----SSVEAEEQLPPG-----WERHEDN--DGPY 105
L+ DL + TL ++++AE+ G W + N D Y
Sbjct: 181 -------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Score = 36.2 bits (83), Expect = 0.012
Identities = 46/274 (16%), Positives = 68/274 (24%), Gaps = 106/274 (38%)
Query: 2 SQMVPSPDIYQRSATYYEK-PTPPRTLSLSEKASCTPAQGASI-----PHVPGD------ 49
P I + S E P+P LS+S + T Q H+P
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSP--MLSIS---NLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 50 LNN------------DLYAVPVKLRGAS----------P------------LP------- 68
L N LY + + LR A P LP
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 69 PLLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEP 128
LL S ++ L + +D P Y G+ R +
Sbjct: 430 HLLVPASDLINKDLVKNNVS------F-NAKDIQIPVY-DTFDGSDLRV-------LSGS 474
Query: 129 KTPLVKDAETVNNDGPYYW---------HIKSGTIQRDPPEFTYGKNEPKTPLVKDAETN 179
+ + D P W HI + P G L +
Sbjct: 475 ISERIVDCIIRL---PVKWETTTQFKATHI----LDFGP-----GGASGLGVLTHRN-KD 521
Query: 180 GSSSNSVLSMVTRSNTSSALEDLDGKRKEDLAFK 213
G+ +++ LD +D FK
Sbjct: 522 GTGVRVIVA-----------GTLDINPDDDYGFK 544
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI-1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 34.9 bits (80), Expect = 0.002
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 79 SSTLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
SS S +++E +LP GWE+ ED YY + Q + P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENP 43
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 35.2 bits (81), Expect = 0.003
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 80 STLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNE--PKTPLVKDA 136
S ++A LP GWE+ +D Y+ + K+ T Q + P + + PL
Sbjct: 2 SPEFHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGW 61
Query: 137 ETV--NNDGPYYWHIKSGTIQRDPP 159
E ++ + + P
Sbjct: 62 EIRYTAAGERFFVDHNTRRTTFEDP 86
Score = 31.0 bits (70), Expect = 0.11
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 76 PSLSSTLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
P S+ E LPPGWE G ++ + + P
Sbjct: 42 PRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 46/336 (13%), Positives = 84/336 (25%), Gaps = 131/336 (38%)
Query: 22 TPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGASPL-----PPLLAD--- 73
TP SL K L+ +P ++ +P + D
Sbjct: 299 TPDEVKSLLLKY----------------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 74 --------LSPSLSSTL-SSVEAEEQLPPGWERH---------EDNDGPY-----YWH-- 108
L++ + SS+ L P R P W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 109 ------------IKSGTIQRDPPEFTYG----------KNEPKTPLVK------------ 134
K +++ P E T K E + L +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 135 ---DAETVNNDGPYYWHI-----KSGTIQRDPPEFT-----YGKNEPKTPLVKDAETNGS 181
D D +Y HI +R F + E K ++ T +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMVFLDFRFLEQK---IRHDSTAWN 515
Query: 182 SSNSVLSMVTRSNTSSALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVE 241
+S S+L+ L+ L K + R + D L + +
Sbjct: 516 ASGSILNT---------LQQL--KFYKPYICDNDPKYERLVNAILDFLPKIEENLI---- 560
Query: 242 ISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQS 277
S++ ++ ++L I+ ++
Sbjct: 561 CSKY------------TDLLRIAL-MAEDEAIFEEA 583
Score = 31.7 bits (71), Expect = 0.33
Identities = 38/296 (12%), Positives = 86/296 (29%), Gaps = 70/296 (23%)
Query: 10 IYQRSATYYEKPTPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVP-----VKLRGA 64
+ T +P+ + + ++ + Y V +KLR A
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAK-------YNVSRLQPYLKLRQA 143
Query: 65 SPLPPLLADLSPSLSSTLS-------SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRD 117
L +L P+ + + + A + ++ D +W +
Sbjct: 144 ------LLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFW-LNLKNCNSP 195
Query: 118 -----PPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPL 172
+ + +P T +D ++ +IQ + K L
Sbjct: 196 ETVLEMLQKLLYQIDPNW-------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 173 ----VKDAET----NGSSSNSVLSMVTRSNTSSALEDLDGKRKEDLAFKRRSYPARAESD 224
V++A+ N S +L + TR + L ++ S +
Sbjct: 249 VLLNVQNAKAWNAFNLSCK--IL-LTTRF--KQVTDFLSAATTTHISLDHHS-MTLTPDE 302
Query: 225 TKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLG---RNHHSTI-YFQ 276
K L++ +++ DL E N + + + R+ +T ++
Sbjct: 303 VKSLLLK-------YLDCRPQDLPRE--VLTTNPRRLSI-IAESIRDGLATWDNWK 348
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 36.5 bits (84), Expect = 0.003
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 222 ESDTKDKL--IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHST 272
+T+D + F VR LG +E+ V + + + R H+
Sbjct: 6 SGETEDSILHQLFIVRFLGSMEVKSD-----DHPDVVYETMRQILAARAIHNI 53
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 33.6 bits (78), Expect = 0.003
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LPPGWER DN G YY + T P
Sbjct: 7 LPPGWERRVDNMGRIYYVDHFTRTTTWQRP 36
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 33.9 bits (78), Expect = 0.004
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 80 STLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
+ S + LPPGW G YY + T P
Sbjct: 1 GSSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHP 41
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 33.3 bits (77), Expect = 0.005
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LPPGWE+ D G YY D P
Sbjct: 3 SGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 37
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo
sapiens}
Length = 49
Score = 33.5 bits (77), Expect = 0.006
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 79 SSTLSSVEAEEQLPPGWERHEDNDG-PYY 106
SS S +++E +LP GWE+ ED YY
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYY 30
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 33.4 bits (77), Expect = 0.006
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 81 TLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
+ LPPGWE DG ++ + Q + P
Sbjct: 2 SPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 32.7 bits (75), Expect = 0.011
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 80 STLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
+ S + LP GWE +G P++ + T + P
Sbjct: 2 AMGPSEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDP 42
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB:
2lb2_A*
Length = 36
Score = 32.1 bits (74), Expect = 0.011
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LP GWE +D G YY + + T P
Sbjct: 1 GSPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRP 34
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 35.0 bits (80), Expect = 0.012
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 193 SNTSSALEDLDGKRKEDLAFKRRSYPARAESDT-KDKLIRFAVRSLGWVEISEHDLTPER 251
+ S+ DL + + R + +A+ D + F VR LG VE+ E R
Sbjct: 4 HHHHSSGVDLGTENLYFQSMASRPHQWQADEDAVRKGTCSFPVRYLGHVEVEES-----R 58
Query: 252 SSKAVNKCIVDLSLGRNH 269
+ L
Sbjct: 59 GMHVCEDAVKKLKAMGRK 76
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 32.2 bits (74), Expect = 0.014
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 88 EEQLPPGWERHEDNDG-PYY 106
+ LPPGWE +G P++
Sbjct: 6 QSFLPPGWEMRIAPNGRPFF 25
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 32.0 bits (73), Expect = 0.021
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 79 SSTLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
S + + + LP WE +G Y+ + T P
Sbjct: 3 SGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDP 44
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 49
Score = 31.8 bits (72), Expect = 0.021
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 79 SSTLSSVEAEEQLPPGWERHED-NDGPYYWHIKSGTIQRDPP 119
SS S E LPPGWER E G YY + Q P
Sbjct: 2 SSGSSGPLEREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 31.4 bits (72), Expect = 0.022
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
E LP GWE+ DG YY + K+ T P
Sbjct: 3 MEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 31.5 bits (72), Expect = 0.025
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LPPGWE G Y+ + T Q P
Sbjct: 3 LGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 32.7 bits (74), Expect = 0.035
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 60 KLRGASPLPPLLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDP 118
K+R + ++ + +LP GWE D G ++ S
Sbjct: 42 KVRRDARNFERYQHNRDLVNFINMFADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFID 101
Query: 119 P 119
P
Sbjct: 102 P 102
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR
{Homo sapiens}
Length = 54
Score = 31.3 bits (71), Expect = 0.035
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 80 STLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKTP 131
+ LP GWE+ D +G ++ + P + ++ T
Sbjct: 1 GSAKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTK 53
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 33.3 bits (76), Expect = 0.044
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 86 EAEEQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFT 122
LPP W R + Y+ + + DPP T
Sbjct: 3 STSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT 41
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription;
NMR {Oryzias latipes}
Length = 46
Score = 30.7 bits (70), Expect = 0.051
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 81 TLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
+ +S A LP GWE+ +G YY + K+ T P
Sbjct: 2 SPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDP 41
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 30.3 bits (69), Expect = 0.065
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 86 EAEEQLPPGWERHEDNDG-PYY 106
LP GWE DG Y+
Sbjct: 3 SGSSGLPYGWEEAYTADGIKYF 24
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 32.5 bits (74), Expect = 0.071
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 88 EEQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFTY---GKNEPKTP 131
EE+LPPGWE + G YY++ + Q + P GKN P
Sbjct: 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEP 55
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 29.9 bits (68), Expect = 0.075
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
EE LPP W +G ++ S P
Sbjct: 8 EEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDP 40
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {}
SCOP: k.22.1.1
Length = 37
Score = 29.8 bits (68), Expect = 0.081
Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 91 LPPGWERHEDNDG-PYY 106
LPPGW+ ++ ++G YY
Sbjct: 4 LPPGWDEYKTHNGKTYY 20
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group
IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 30.3 bits (68), Expect = 0.083
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 87 AEEQLPPGWERHEDN--DGPYYWHIKSGTIQRDPPEFT 122
LP GWE N + PYY++ + + +PP T
Sbjct: 4 VNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 40
Score = 29.5 bits (67), Expect = 0.097
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 87 AEEQLPPGWERHEDNDG-PYY 106
LP GWE DG PY+
Sbjct: 4 GSSGLPEGWEMRFTVDGIPYF 24
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex; NMR
{Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Length = 53
Score = 29.3 bits (66), Expect = 0.15
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 75 SPSLSSTLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
S + S+ E LPPGWE G ++ + + P
Sbjct: 3 LGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 29.1 bits (66), Expect = 0.18
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
+ LP GWE + + G Y+ + T P
Sbjct: 6 DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 31.2 bits (70), Expect = 0.30
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTY 123
+ WER + PYY + ++ T D P+ T
Sbjct: 8 LSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTE 45
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 28.1 bits (62), Expect = 0.51
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 95 WERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKT 130
W ++G YY+ + SG Q + PE G + +
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTS 45
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 29.2 bits (65), Expect = 1.0
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 216 SYPARAESDTKDKL--IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHST 272
R T+D + F VR LG +E+ V + + + R H+
Sbjct: 13 GLVPRGSHMTEDSILHQLFIVRFLGSMEVKSD-----DHPDVVYETMRQILAARAIHNI 66
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR
{Homo sapiens}
Length = 116
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 150 KSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLDGK 205
+ G I+ + +P L D ET + +S + +A++ DGK
Sbjct: 30 QIGIIKTNKKT-----GQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 28.4 bits (63), Expect = 2.0
Identities = 5/39 (12%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268
+++ + +G ++ + + S ++ K + GR+
Sbjct: 17 VKYKAKLIGIDDVPDARGD-KMSQDSMMKLKGMAAAGRS 54
>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomic center
for structural genomics, JCSG; HET: MSE; 1.59A
{Parabacteroides distasonis atcc 8503}
Length = 241
Score = 28.7 bits (63), Expect = 2.2
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 94 GWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKN 126
GW + D P W ++ G+I +
Sbjct: 34 GWRGYCRQDVPLGWVVEDGSITYKGSDNKADTG 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative, RNA recognition; NMR {Homo sapiens}
Length = 99
Score = 26.9 bits (60), Expect = 2.8
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 150 KSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLDGK 205
+ G I+ + +P L D ET + +S + +A++ DGK
Sbjct: 36 QIGIIKTNKKT-----GQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 28.1 bits (63), Expect = 2.9
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 190 VTRSNTSSALEDLDGKRKEDLAF-----KRRSYPARAESDTKDKLIRFAVR 235
+ S+ AL + + +LA R Y + E + K+ +
Sbjct: 141 IGESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTT 191
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport,
CF(0), stator, transport, acetylation, hydrogen ION
transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Length = 214
Score = 28.2 bits (62), Expect = 2.9
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 143 GPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSM-----VTRSNTSS 197
G ++ + K + + S V V R+N +
Sbjct: 75 GASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAM 134
Query: 198 ALEDLDGKRKEDLA--FKRR-SYPARAESDTKDKLIRFAVRSLGWVEIS-EHDLTPERSS 253
ALE +R + K R Y ++ + K + WVE ++ ++
Sbjct: 135 ALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMIN---WVEKRVVQSISAQQEK 191
Query: 254 KAVNKCIVDL 263
+ + KCI DL
Sbjct: 192 ETIAKCIADL 201
>3osd_A Putative glycosyl hydrolase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.80A {Bacteroides
thetaiotaomicron} PDB: 3nmb_A
Length = 265
Score = 28.0 bits (61), Expect = 3.7
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 94 GWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAE----TVNNDGPYYWHI 149
GW + + P W I+ G I+ + ++ L+ + + +
Sbjct: 49 GWRGYGKDRVPSKWTIEDGCIKFNGSGGGEAQDGDGGDLIFAHKFKNFELEMEWKVSKGG 108
Query: 150 KSGTIQRDPPEFTYGKNEP 168
SG + K+
Sbjct: 109 NSGIFYLAQEVTSKDKDGN 127
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 25.2 bits (55), Expect = 4.1
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 83 SSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120
S + W H+ DG YY++ ++ + P+
Sbjct: 2 SRRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD 40
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats,
helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS
response, DNA binding protein; 1.80A {Escherichia coli}
Length = 159
Score = 26.9 bits (60), Expect = 5.8
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 190 VTRSNTSSALEDLDG---KRKEDLAFKRRSYPARAESDTKDKLIRFAVR 235
++R T A+ + D D A ++ P K K+ RF +
Sbjct: 94 ISREATEKAMREADIDWAALARDQATRKYGEPLPTVFSEKVKIQRFLLY 142
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment,
WW domain, triple-standed beta-sheet, alpha-helix,
nucleus, phosphorylation; NMR {Homo sapiens}
Length = 52
Score = 25.0 bits (54), Expect = 5.9
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 88 EEQLPPGWERH--EDNDGPYYWHIKSGTIQRDPP 119
EE + GWE+ + PYY++ + + P
Sbjct: 8 EELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMP 41
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces
cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae}
SCOP: b.72.1.1
Length = 27
Score = 24.3 bits (52), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 93 PGWERHEDNDGPYYWHIKSGTIQRDPP 119
PGWE +N P Y++ + T PP
Sbjct: 1 PGWEIIHENGRPLYYNAEQKTKLHYPP 27
>3tj0_A Nucleoprotein; RNA-binding, HOMO-oligomerization, transcription
regulation, RNA binding protein; 3.23A {Influenza b
virus}
Length = 562
Score = 27.2 bits (59), Expect = 7.9
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 149 IKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLDGKRKE 208
I +GTI + P E T G + P+++ A T SN + +++ ED G++ +
Sbjct: 11 INTGTIDKTPEEITSGTSGTTRPIIRPA-TLAPPSNKRTRNPSPERATTSSEDDVGRKTQ 69
Query: 209 D 209
Sbjct: 70 K 70
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 26.8 bits (60), Expect = 9.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 8 PDIYQRSATYYEKPTPPRTL 27
+ Y RS TY KP P T
Sbjct: 72 VETYIRSGTYSRKPLLPYTP 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.384
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,232,386
Number of extensions: 236003
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 68
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.5 bits)