RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3534
(282 letters)
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor
protein-binding family B member 1, APBB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 57.6 bits (139), Expect = 4e-12
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 91 LPPGWERHEDNDGPYYWHIKSGTIQRDPP 119
LP GW R +D G YYWHI +GT Q +PP
Sbjct: 3 LPAGWMRVQDTSGTYYWHIPTGTTQWEPP 31
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding
family B member 3, APBB3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 26
Score = 40.7 bits (95), Expect = 4e-06
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 91 LPPGWERHEDNDGPYYWHIKSGTIQ 115
LPPGW + D G YYWH+ SG+ Q
Sbjct: 2 LPPGWRKIHDAAGTYYWHVPSGSTQ 26
Score = 26.1 bits (57), Expect = 0.57
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 143 GPYYWHIKSGTIQ 155
G YYWH+ SG+ Q
Sbjct: 14 GTYYWHVPSGSTQ 26
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 38.2 bits (89), Expect = 4e-05
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 83 SSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LPPGWE DG ++ + Q + P
Sbjct: 4 VDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 46
Score = 37.8 bits (88), Expect = 6e-05
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
+ LP GWE + + G Y+ + T P
Sbjct: 6 DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 36.6 bits (85), Expect = 1e-04
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LP GWE+ +D Y+ + K+ T Q + P
Sbjct: 13 LPDGWEKKIQSDNRVYFVNHKNRTTQWEDP 42
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 36.2 bits (84), Expect = 2e-04
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 90 QLPPGWERHEDNDG--PYYWHIKSGTIQRDPP 119
+LPPGWE+ YY++ + Q + P
Sbjct: 1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 32
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 35.0 bits (81), Expect = 3e-04
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
LPPGWE G ++ + + P
Sbjct: 3 LPPGWEIRYTAAGERFFVDHNTRRTTFEDP 32
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 32.8 bits (74), Expect = 0.023
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 230 IRFAVRSLGWVEISEHDLTPERSS-----KAVNKCIVDLSLGRNHHST 272
I FA LG ++ + +AV++ + L ++
Sbjct: 8 IIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKA 55
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 30.2 bits (68), Expect = 0.030
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 94 GWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122
GW+ + DG YY++ + P F
Sbjct: 15 GWKAAKTADGKVYYYNPTTRETSWTIPAFE 44
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 148
Score = 30.3 bits (68), Expect = 0.11
Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGR 267
+++ + +G ++ + S ++ K + GR
Sbjct: 17 VKYKAKLIGIDDVPDARGDKM-SQDSMMKLKGMAAAGR 53
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 28.2 bits (63), Expect = 0.12
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120
W ++ DG YY++ ++ + P+
Sbjct: 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQ 34
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 135
Score = 29.2 bits (65), Expect = 0.29
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTI 273
F+V+ LG VE+ E R + + + L R
Sbjct: 15 CSFSVKYLGCVEVFES-----RGMQVCEEALKVLRQSRRRPVRG 53
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 152
Score = 28.1 bits (62), Expect = 0.71
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 218 PARAESDTKDKL----IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGR 267
R+E+ + +R+ + +G E+S + ++ K ++ R
Sbjct: 2 QDRSEATLIKRFKGEGVRYKAKLIGIDEVSAARGD-KLCQDSMMKLKGVVAGAR 54
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 27
Score = 25.8 bits (56), Expect = 0.73
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 93 PGWERHEDNDGPYYWHIKSGTIQRDPP 119
PGWE +N P Y++ + T PP
Sbjct: 1 PGWEIIHENGRPLYYNAEQKTKLHYPP 27
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Length = 156
Score = 28.1 bits (62), Expect = 0.73
Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 5/47 (10%)
Query: 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQ 276
F V+ LG VE+ E R + L
Sbjct: 26 CSFPVKYLGHVEVDES-----RGMHICEDAVKRLKATGKKAVKAVLW 67
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.2 bits (55), Expect = 1.3
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 95 WERHEDNDG-PYYWHIKSGTIQRDPPE 120
W ++G YY+ + SG Q + PE
Sbjct: 3 WVEGITSEGYHYYYDLISGASQWEKPE 29
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 25.5 bits (55), Expect = 7.3
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 42 SIPHVPGDLNNDLYAVPVKLRGASPLPPLLADLSPSLSSTLSSVEA 87
S+ V +L N + + + P +LA++ +++ +
Sbjct: 195 SMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEI---ITNQIPKYSN 237
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.384
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,043,382
Number of extensions: 46163
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 20
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)