BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3537
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 32 DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
DSD + R + +H + TAR+ NI VV+ KL+VHG++ +R+ADASV+P +
Sbjct: 492 DSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPD 551
Query: 92 ANIHATCVMIGEKCADLIK 110
I + +GEKCAD+IK
Sbjct: 552 CRIQNSVYAVGEKCADMIK 570
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 28 GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIADAS 84
G +D+ + I++ ++ YH T RMG D + S ++ +L+V G+ +R+ADAS
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEM--SPLDPELRVKGVTGLRVADAS 501
Query: 85 VMPYTVNANIHATCVMIGEKCADLIK 110
VMP V N + T +MIGE+CADLI+
Sbjct: 502 VMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 28 GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIADAS 84
G +D+ + I++ ++ YH T RMG D + S ++ +L+V G+ +R+ADAS
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEM--SPLDPELRVKGVTGLRVADAS 501
Query: 85 VMPYTVNANIHATCVMIGEKCADLIK 110
VMP V N + T +MIGE+CADLI+
Sbjct: 502 VMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 61.6 bits (148), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 28 GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIADAS 84
G +D+ + I++ ++ YH T RMG D + S ++ +L+V G+ +R+ADAS
Sbjct: 444 GVEAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEM--SPLDPELRVKGVTGLRVADAS 501
Query: 85 VMPYTVNANIHATCVMIGEKCADLIK 110
VMP V N + T +MIGE+CADLI+
Sbjct: 502 VMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 41 IKRRSSSYYHLSSTARMGDNILT-SVVNYKLQVHGLENVRIADASVMPYTVNANIHATCV 99
I+ +++ +H TA M + VV+ L+V G++ +RI D S++P+ NA+
Sbjct: 493 IRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIY 552
Query: 100 MIGEKCADLIK 110
++G++ ADLIK
Sbjct: 553 LVGKQGADLIK 563
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 32 DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
+ DD+ I R +++H T RMG + +VV+ L++ L+N+ + DAS+MP
Sbjct: 448 EMDDF----IARSVITHHHPCGTCRMGKDP-DAVVDANLRLKALDNLFVVDASIMPNLTA 502
Query: 92 ANIHATCVMIGEKCADLIKQY 112
IHA + I E A +QY
Sbjct: 503 GPIHAAVLAIAETFA---RQY 520
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 22 DAIVCDGFHYDSD-DYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRI 80
+ I D YD+D W I YH T M + VV+ +V+G++ +R+
Sbjct: 487 ETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRV 546
Query: 81 ADASVMPYTVNANIHATCVMIGEKCADLI 109
D S+ P +++++ + K +D I
Sbjct: 547 IDGSIPPTQMSSHVMTVFYAMALKISDAI 575
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 33 SDDYWKCTIKRRS-SSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
+DD T R S +SY+H G ++ V++ +V G+ +R+ D S PYT
Sbjct: 441 TDDAAFETFCRESVASYWHYH-----GGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPA 495
Query: 92 ANIHATCVMIG 102
++ +M+G
Sbjct: 496 SHPQGFYLMLG 506
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 33 SDDYWKCTIKRRS-SSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
+DD T R S +SY+H G ++ V++ +V G+ +R+ D S PYT
Sbjct: 441 TDDAAFETFCRESVASYWHYH-----GGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPA 495
Query: 92 ANIHATCVMIG 102
++ +M+G
Sbjct: 496 SHPQGFYLMLG 506
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 46 SSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKC 105
+SY+H +G+ V++ +V G+ +R+ D S PY+ ++ +M+G
Sbjct: 456 ASYWHYHGGCLVGE-----VLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYV 510
Query: 106 ADLIKQ 111
I Q
Sbjct: 511 GSKILQ 516
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 33 SDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNA 92
+DY+ I S ++Y L S M D++L ++ +V D Y N
Sbjct: 141 GEDYYLREISGGSRNFYPLKSRQEMYDSLLAGII----------DVSFMDIGTAEYVTN- 189
Query: 93 NIHATCVMIGE 103
NI+ ++GE
Sbjct: 190 NIYCNLTLVGE 200
>pdb|2L2F|A Chain A, Nmr Structure Of Gzcvnh (Gibberella Zeae Cvnh)
Length = 108
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 58 GDNILTSVVNYKLQVHGLENVRIADASVMPY---TVNANIHATCVMIGEKCADLI 109
G+N S N L + G +N+ + A + P V AN++ + IG C LI
Sbjct: 52 GENFSGSASNITLDIEGDDNIPVLRAELNPMDGDPVEANVNLS-ERIGNDCGTLI 105
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1 MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSD 34
M L+ +E LN+L +P T A+ HY S+
Sbjct: 377 MTTLSALEAVLNYLKFPTTQGAAMQAAWDHYRSE 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,376,550
Number of Sequences: 62578
Number of extensions: 110080
Number of successful extensions: 386
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 17
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)