Query psy3537
Match_columns 117
No_of_seqs 103 out of 1115
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:12:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 5.6E-32 1.2E-36 230.5 9.3 113 2-114 502-617 (623)
2 PF05199 GMC_oxred_C: GMC oxid 100.0 1.2E-31 2.6E-36 188.2 7.3 104 1-105 38-144 (144)
3 TIGR01810 betA choline dehydro 100.0 1.8E-30 4E-35 217.1 9.8 108 2-113 422-530 (532)
4 PRK02106 choline dehydrogenase 100.0 7.2E-30 1.6E-34 214.8 9.7 107 2-113 429-535 (560)
5 PLN02785 Protein HOTHEAD 99.9 1.3E-27 2.9E-32 203.6 10.1 107 1-113 461-580 (587)
6 COG2303 BetA Choline dehydroge 99.9 4.9E-26 1.1E-30 192.3 8.4 107 2-112 430-536 (542)
7 TIGR02462 pyranose_ox pyranose 99.8 3.4E-20 7.4E-25 157.4 7.3 68 47-114 477-544 (544)
8 COG1252 Ndh NADH dehydrogenase 90.0 0.74 1.6E-05 38.6 5.4 51 63-113 279-331 (405)
9 PTZ00318 NADH dehydrogenase-li 86.4 1.8 3.9E-05 35.5 5.4 49 65-113 298-347 (424)
10 TIGR03169 Nterm_to_SelD pyridi 86.1 1.7 3.7E-05 34.4 5.0 49 65-113 261-310 (364)
11 KOG2495|consensus 80.2 3 6.5E-05 35.8 4.3 55 51-111 331-390 (491)
12 TIGR02734 crtI_fam phytoene de 74.2 13 0.00029 30.9 6.6 39 72-114 455-493 (502)
13 PF13807 GNVR: G-rich domain o 68.6 7.7 0.00017 24.8 3.3 33 74-106 37-69 (82)
14 PRK04176 ribulose-1,5-biphosph 65.7 30 0.00066 26.7 6.6 65 49-115 188-256 (257)
15 PRK12839 hypothetical protein; 57.2 28 0.0006 30.2 5.5 62 48-113 502-568 (572)
16 PRK12845 3-ketosteroid-delta-1 56.7 25 0.00054 30.4 5.1 50 60-111 509-563 (564)
17 TIGR02733 desat_CrtD C-3',4' d 55.5 37 0.00081 28.1 5.9 35 73-111 456-490 (492)
18 PRK12837 3-ketosteroid-delta-1 54.6 31 0.00066 29.2 5.2 56 51-110 449-509 (513)
19 PRK12842 putative succinate de 51.4 52 0.0011 28.3 6.2 62 48-113 501-567 (574)
20 PRK06134 putative FAD-binding 49.9 27 0.00059 30.1 4.3 63 47-113 504-571 (581)
21 PRK12843 putative FAD-binding 49.7 35 0.00076 29.4 4.9 53 60-114 516-573 (578)
22 TIGR02730 carot_isom carotene 48.7 33 0.00072 28.6 4.5 37 73-113 456-492 (493)
23 PRK12844 3-ketosteroid-delta-1 43.8 39 0.00084 29.1 4.3 61 49-113 485-550 (557)
24 PRK12835 3-ketosteroid-delta-1 39.7 1E+02 0.0022 26.7 6.3 52 60-113 514-570 (584)
25 TIGR00292 thiazole biosynthesi 39.6 66 0.0014 24.8 4.6 63 50-114 188-254 (254)
26 TIGR01292 TRX_reduct thioredox 39.5 50 0.0011 24.7 3.9 43 65-112 256-299 (300)
27 PRK07121 hypothetical protein; 37.3 76 0.0017 26.5 5.0 47 66-112 434-490 (492)
28 COG2018 Uncharacterized distan 30.1 72 0.0016 22.5 3.1 27 84-110 34-64 (119)
29 PRK07843 3-ketosteroid-delta-1 29.4 73 0.0016 27.3 3.7 60 49-112 492-556 (557)
30 PRK08274 tricarballylate dehyd 29.0 88 0.0019 25.7 4.0 50 62-113 407-461 (466)
31 PRK06481 fumarate reductase fl 28.0 1.8E+02 0.0039 24.5 5.8 47 64-112 452-502 (506)
32 TIGR02485 CobZ_N-term precorri 27.2 1.1E+02 0.0023 25.0 4.2 51 60-112 374-429 (432)
33 PRK09754 phenylpropionate diox 26.6 78 0.0017 25.5 3.3 44 65-110 258-307 (396)
34 PRK12834 putative FAD-binding 25.3 1.9E+02 0.0041 24.6 5.5 57 50-110 483-547 (549)
35 cd01445 TST_Repeats Thiosulfat 22.9 32 0.00068 24.1 0.3 53 32-85 78-133 (138)
36 PRK08275 putative oxidoreducta 22.8 1.9E+02 0.0041 24.7 5.0 56 47-110 346-401 (554)
37 PF11393 IcmL: Macrophage kill 22.5 83 0.0018 21.2 2.3 32 82-113 1-32 (108)
38 TIGR03385 CoA_CoA_reduc CoA-di 21.1 1.6E+02 0.0034 23.9 4.0 45 65-110 252-302 (427)
39 PLN00128 Succinate dehydrogena 20.4 3.1E+02 0.0067 24.2 5.9 47 66-112 405-465 (635)
40 PRK07057 sdhA succinate dehydr 20.4 2.9E+02 0.0062 24.0 5.7 48 64-111 363-424 (591)
No 1
>KOG1238|consensus
Probab=99.97 E-value=5.6e-32 Score=230.54 Aligned_cols=113 Identities=35% Similarity=0.609 Sum_probs=104.7
Q ss_pred hHHHHHHcCcccccCcccccccc--cCCCCCCCCHHHHHHHHhcccCccccccCCccccC-CCCCccccCCCeEeccCCe
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVDAI--VCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENV 78 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL 78 (117)
|.+.+++++++|+++.......+ .|......+|++|+||+|..+.|.||++|||+||+ .|+++|||+++||||++||
T Consensus 502 ~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~L 581 (623)
T KOG1238|consen 502 RTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGL 581 (623)
T ss_pred HHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCc
Confidence 66889999999999998765433 27666789999999999999999999999999999 8999999999999999999
Q ss_pred EEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 79 RIADASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 79 ~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
||+|+||||.+|++||++|+||||||+|++|+++|.
T Consensus 582 RVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~ 617 (623)
T KOG1238|consen 582 RVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWL 617 (623)
T ss_pred eEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999984
No 2
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=1.2e-31 Score=188.24 Aligned_cols=104 Identities=32% Similarity=0.449 Sum_probs=84.9
Q ss_pred ChHHHHHHcCcccccCccccccc-c--cCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCC
Q psy3537 1 MNDLNTMEMTLNFLNWPKTMVDA-I--VCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLEN 77 (117)
Q Consensus 1 ~~~~~~i~~~~~~~~~~~~~~~~-~--~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~n 77 (117)
+|.+++++.++ |+++...+... . .++.....++++|++|+++...+++|++|||+||+++..+|||++|||||++|
T Consensus 38 ~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~n 116 (144)
T PF05199_consen 38 IKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRN 116 (144)
T ss_dssp HHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBS
T ss_pred HHHHHHHHhhh-hcccccccccccccccccccccccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeee
Confidence 36788999888 87775543221 1 13444668899999999999999999999999999888899999999999999
Q ss_pred eEEecCCCCCCCCCCChHHHHHHHHHHH
Q psy3537 78 VRIADASVMPYTVNANIHATCVMIGEKC 105 (117)
Q Consensus 78 L~V~DaSv~P~~~~~np~~t~~~~a~r~ 105 (117)
|||+|+|+||+.+++||++|+||+|+|+
T Consensus 117 L~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 117 LRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp EEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred EEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 9999999999999999999999999996
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.97 E-value=1.8e-30 Score=217.08 Aligned_cols=108 Identities=28% Similarity=0.404 Sum_probs=98.9
Q ss_pred hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccC-CCCCccccCCCeEeccCCeEE
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVRI 80 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL~V 80 (117)
|.+++++++++|+.+...+. .|+....+|++|++|+|+...+.+|++|||+||+ ++.+||||+++||||++||||
T Consensus 422 ~~~~~i~~~~~~~~~~~~~~----~p~~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrV 497 (532)
T TIGR01810 422 RVTREILKQKALDPYRGGEI----SPGPEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRV 497 (532)
T ss_pred HHHHHHHcCcchhhcccccc----CCCCCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEE
Confidence 67899999999988765443 3777778999999999999999999999999998 788999999999999999999
Q ss_pred ecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 81 ADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 81 ~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+|+||||.+|++||++|+||+|||+||+|+++.
T Consensus 498 vDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 498 VDASIMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred eeeccCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999998753
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=99.96 E-value=7.2e-30 Score=214.82 Aligned_cols=107 Identities=29% Similarity=0.437 Sum_probs=97.4
Q ss_pred hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEe
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIA 81 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~ 81 (117)
|.+++|+++++++++...+. .|+....++++|++|+++...+++|++|||+||+++ +||||+++||||++||||+
T Consensus 429 ~~~~~i~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~-~sVVD~~~rV~Gv~nLrVv 503 (560)
T PRK02106 429 RLTREIMAQPALDPYRGREI----SPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDP-MAVVDPEGRVHGVEGLRVV 503 (560)
T ss_pred HHHHHHHcChhhhhcccccc----CCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCC-CeeECCCCEEeccCCeEEe
Confidence 67889999999988765443 376667889999999999999999999999999855 8999999999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 82 DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 82 DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
|+||||+.+++||++|+||+|||+|+.|++++
T Consensus 504 DaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 504 DASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred eccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999876
No 5
>PLN02785 Protein HOTHEAD
Probab=99.95 E-value=1.3e-27 Score=203.64 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=91.6
Q ss_pred ChHHHHHHcCcccccCcccccc-------------cccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCcccc
Q psy3537 1 MNDLNTMEMTLNFLNWPKTMVD-------------AIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVN 67 (117)
Q Consensus 1 ~~~~~~i~~~~~~~~~~~~~~~-------------~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD 67 (117)
+|.+++|+++++|+++...+.. .+..|. ...++++|++|+|++..+.||++|||+|| +|||
T Consensus 461 ~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG-----~VVD 534 (587)
T PLN02785 461 IRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVD 534 (587)
T ss_pred HHHHHHHHcChhhhhhccccccccccccccccccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC-----CeEC
Confidence 3678999999999887633210 000132 24678999999999999999999999998 6999
Q ss_pred CCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 68 YKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 68 ~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+++||||++||||+|+||||.+|++||++|+||+|||+|++|+++.
T Consensus 535 ~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 535 QNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998875
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.93 E-value=4.9e-26 Score=192.35 Aligned_cols=107 Identities=29% Similarity=0.337 Sum_probs=97.5
Q ss_pred hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEe
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIA 81 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~ 81 (117)
+..++++.++++..+...+. .|+....+++++.+|++....+.+|++|||+||.++..+|+|+++||||++||||+
T Consensus 430 ~~~r~i~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~Vv 505 (542)
T COG2303 430 RLTREIIGQPALDARRKAEL----APGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVV 505 (542)
T ss_pred HHHHHHhcCccchhhHHHhh----cCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEe
Confidence 56788888888888877665 38888999999999999999999999999999987777777799999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 82 DASVMPYTVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 82 DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
|+|+||+++++||++|++|+|+|+|++|+++
T Consensus 506 DaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 506 DASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred CcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999873
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.81 E-value=3.4e-20 Score=157.43 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=65.2
Q ss_pred ccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 47 SYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 47 ~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
.++|++|||+||.++.++|||+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|+++++
T Consensus 477 ~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 477 LALHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred ccccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999999999999999999999999999999999998763
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=89.97 E-value=0.74 Score=38.61 Aligned_cols=51 Identities=29% Similarity=0.197 Sum_probs=36.4
Q ss_pred CccccCCCeEeccCCeEEe-cCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHh
Q psy3537 63 TSVVNYKLQVHGLENVRIA-DASVMPYTVNANIHA-TCVMIGEKCADLIKQYW 113 (117)
Q Consensus 63 ~~VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~-t~~~~a~r~a~~i~~~~ 113 (117)
.=+||+++++.|.+++|++ |++.++..-...|++ -.+.-|+.+|..|++++
T Consensus 279 rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l 331 (405)
T COG1252 279 RLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARL 331 (405)
T ss_pred CEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999 999998750011222 23456677777777765
No 9
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.37 E-value=1.8 Score=35.54 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=35.5
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.||+.+|+.+.+|+|++ |++-++..+........+.-|..+|+.|.+.+
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999 88887654322233345667788888887765
No 10
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=86.13 E-value=1.7 Score=34.43 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=34.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.||+.+|..+.+|+|++ |++.++..+........+.-|..+|..|.+.+
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 57778888889999999 88877655443333445666777777776654
No 11
>KOG2495|consensus
Probab=80.15 E-value=3 Score=35.79 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=36.0
Q ss_pred ccCCccccCCCCCc----cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy3537 51 LSSTARMGDNILTS----VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQ 111 (117)
Q Consensus 51 ~~GT~~Mg~~~~~~----VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~ 111 (117)
+.++--|-.-++++ .||+++||.|++|+|-+ |++.+|..+ | ..-+|++=+..+.+
T Consensus 331 p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~---~---tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 331 PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLK---P---TAQVAEQQGAYLAK 390 (491)
T ss_pred hhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCc---c---HHHHHHHHHHHHHH
Confidence 33444555544444 89999999999999988 888555544 3 33456655555443
No 12
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=74.19 E-value=13 Score=30.86 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=27.0
Q ss_pred EeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 72 VHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 72 V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
-..++|||.+.+|++|-.. . .-++.=|..+|+.|.++.+
T Consensus 455 ~t~i~gLyl~G~~~~pG~G---v-~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPGAG---V-PGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred CCCCCCEEEeCCCCCCCCC---H-HHHHHHHHHHHHHHHhhcc
Confidence 3578999999999987321 1 2234567778888877764
No 13
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=68.64 E-value=7.7 Score=24.79 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=26.9
Q ss_pred ccCCeEEecCCCCCCCCCCChHHHHHHHHHHHH
Q psy3537 74 GLENVRIADASVMPYTVNANIHATCVMIGEKCA 106 (117)
Q Consensus 74 Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a 106 (117)
...+++|+|..+.|..|......-++++|--++
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 367899999999999998888877777775444
No 14
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=65.73 E-value=30 Score=26.70 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=46.2
Q ss_pred ccccCCccccC-CCCCccccCCCeEeccCCeEEecCC---CCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537 49 YHLSSTARMGD-NILTSVVNYKLQVHGLENVRIADAS---VMPYTVNANIHATCVMIGEKCADLIKQYWEK 115 (117)
Q Consensus 49 ~H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL~V~DaS---v~P~~~~~np~~t~~~~a~r~a~~i~~~~~~ 115 (117)
.-..|--.|.. ..+..||+...+| +.||+|+.=+ +....--+.+-.-++.-++|+|+.|.++++.
T Consensus 188 ~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 188 IEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 33446666665 5566899999999 7899999644 3333333455566666899999999998864
No 15
>PRK12839 hypothetical protein; Provisional
Probab=57.23 E-value=28 Score=30.16 Aligned_cols=62 Identities=11% Similarity=-0.042 Sum_probs=41.2
Q ss_pred cccccCCccccCCCCCccccCCCeEeccCCeEEec---CCCCCC-C-CCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 48 YYHLSSTARMGDNILTSVVNYKLQVHGLENVRIAD---ASVMPY-T-VNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 48 ~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P~-~-~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.+|..|..+. ++..-|+|.++++ +.|||.+. ++++-. - .+++.....+..+..+++.+.+.-
T Consensus 502 ~~~T~GGl~i--n~~~qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~ 568 (572)
T PRK12839 502 SFGTFAGLVA--DGKSRVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGST 568 (572)
T ss_pred ccccCCCccC--CCCceEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 3444455444 3445677777665 78999995 355532 1 247778889999999999886643
No 16
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=56.65 E-value=25 Score=30.43 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=33.6
Q ss_pred CCCCccccCCCeEeccCCeEEec---CCCCC-CCCC-CChHHHHHHHHHHHHHHHHH
Q psy3537 60 NILTSVVNYKLQVHGLENVRIAD---ASVMP-YTVN-ANIHATCVMIGEKCADLIKQ 111 (117)
Q Consensus 60 ~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P-~~~~-~np~~t~~~~a~r~a~~i~~ 111 (117)
++..-|+|.++++ +.|||.+. ++++- .-++ ++.....+..+..+++.+.+
T Consensus 509 d~~~qVLd~dg~p--I~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 509 DERARVLREDGSV--IDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCceEECCCCCC--CCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 3444566666654 78999995 45553 3333 77788888899988887643
No 17
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=55.48 E-value=37 Score=28.13 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=23.8
Q ss_pred eccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy3537 73 HGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQ 111 (117)
Q Consensus 73 ~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~ 111 (117)
..++|||.|.+|++|-.. . ..++.=|..+|+.|.+
T Consensus 456 t~i~gLyl~G~~~~pG~G---v-~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 456 TPVKGLWLCGDSIHPGEG---T-AGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCeEEecCccCCCCc---H-HHHHHHHHHHHHHHhh
Confidence 368999999999988311 1 2234567777777754
No 18
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=54.56 E-value=31 Score=29.23 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=37.2
Q ss_pred ccCCccccCCCCCccccCCCeEeccCCeEEec---CCCC-CCCC-CCChHHHHHHHHHHHHHHHH
Q psy3537 51 LSSTARMGDNILTSVVNYKLQVHGLENVRIAD---ASVM-PYTV-NANIHATCVMIGEKCADLIK 110 (117)
Q Consensus 51 ~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~D---aSv~-P~~~-~~np~~t~~~~a~r~a~~i~ 110 (117)
..|.+++ +...-|+|.++++ +.|||.+. ++++ ..-+ +++.....+..+..++..+.
T Consensus 449 T~GGl~i--n~~~qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa 509 (513)
T PRK12837 449 TKGGLRT--DTAARVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMA 509 (513)
T ss_pred eCCCceE--CCCceEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHh
Confidence 3344444 3445677777776 68999994 3455 2223 36778888999998888774
No 19
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=51.41 E-value=52 Score=28.27 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=40.8
Q ss_pred cccccCCccccCCCCCccccCCCeEeccCCeEEec---CCCCCCC-C-CCChHHHHHHHHHHHHHHHHHHh
Q psy3537 48 YYHLSSTARMGDNILTSVVNYKLQVHGLENVRIAD---ASVMPYT-V-NANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 48 ~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P~~-~-~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
..+..|..++ ++..-|+|.++++ +.|||.+. ++++-.. + .++.....+..+..+++.+.+..
T Consensus 501 ~~~T~GGl~i--d~~~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 501 DLGTFDGLRT--DVTGEVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred ccccCCCcCC--CCCceEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 3344455544 4455677777765 68999996 3454321 2 36778888999999998886654
No 20
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=49.91 E-value=27 Score=30.12 Aligned_cols=63 Identities=14% Similarity=0.001 Sum_probs=42.5
Q ss_pred ccccccCCccccCCCCCccccCCCeEeccCCeEEec---CCCCCC-C-CCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 47 SYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIAD---ASVMPY-T-VNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 47 ~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P~-~-~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
..++..|..++ ++..-|+|.++++ +.|||.+. ++++-. - .+++.....+..+..+++.+.+..
T Consensus 504 ~~~~T~GGl~i--d~~~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 504 GCLGTFAGLKT--DADARVLDQAGQP--IPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred cccccCCCccC--CCCCceECCCCCC--cCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 34445566665 4556688888875 78999996 344421 1 246677888888998888886654
No 21
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=49.73 E-value=35 Score=29.42 Aligned_cols=53 Identities=15% Similarity=0.015 Sum_probs=34.2
Q ss_pred CCCCccccCCCeEeccCCeEEec---CCCCCCC--CCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 60 NILTSVVNYKLQVHGLENVRIAD---ASVMPYT--VNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 60 ~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P~~--~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
++..-|+|.++++ +.|||.+. ++++... ..++.....+..+..+++.+.+..+
T Consensus 516 n~~~qVld~dg~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 516 DASARVLNADGQP--ISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CCCceEECCCCCC--cCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 4455667776665 78999985 3444321 2355667788888888887765543
No 22
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=48.65 E-value=33 Score=28.58 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=26.0
Q ss_pred eccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 73 HGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 73 ~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
-.++|||.+.+|++|-. .. ..+++-|..+|+.|.+++
T Consensus 456 t~i~gLyl~G~~~~pG~---Gv-~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPGQ---GL-NAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCCCeEEecCcCCCCC---CH-HHHHHHHHHHHHHHHhhc
Confidence 46899999999998831 12 223456778888887664
No 23
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=43.76 E-value=39 Score=29.06 Aligned_cols=61 Identities=15% Similarity=-0.024 Sum_probs=38.3
Q ss_pred ccccCCccccCCCCCccccCCCeEeccCCeEEec---CCCCCC-CCC-CChHHHHHHHHHHHHHHHHHHh
Q psy3537 49 YHLSSTARMGDNILTSVVNYKLQVHGLENVRIAD---ASVMPY-TVN-ANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 49 ~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P~-~~~-~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.+..|..+. ++..-|+|.++++ +.|||.+. ++++-. -++ ++.....+..+..+++.+.+..
T Consensus 485 ~~T~GGl~i--n~~~qVld~~g~p--IpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~ 550 (557)
T PRK12844 485 VGTSGGLLT--DEHARVLREDGSV--IPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGAR 550 (557)
T ss_pred cEECCCccC--CCCceEECCCCCC--ccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhcc
Confidence 333444443 3444566666664 78999995 345432 233 6677888888888888876554
No 24
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=39.69 E-value=1e+02 Score=26.72 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=33.9
Q ss_pred CCCCccccCCCeEeccCCeEEec---CCCCCCC-CC-CChHHHHHHHHHHHHHHHHHHh
Q psy3537 60 NILTSVVNYKLQVHGLENVRIAD---ASVMPYT-VN-ANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 60 ~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P~~-~~-~np~~t~~~~a~r~a~~i~~~~ 113 (117)
++..-|+|.++++ +.|||.+. ++++-.. ++ ++.....+..+..+++.+.+..
T Consensus 514 n~~~qVLd~~g~p--IpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 514 DEHARVLREDDSV--IPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CCCceEECCCCCC--ccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 3444566666665 68999995 4555322 22 4567777888888888876654
No 25
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=39.63 E-value=66 Score=24.85 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=43.4
Q ss_pred cccCCccccC-CCCCccccCCCeEeccCCeEEecCCC---CCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 50 HLSSTARMGD-NILTSVVNYKLQVHGLENVRIADASV---MPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 50 H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL~V~DaSv---~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
+..|--.|.. ..+..||+...+| +.||+|+.=++ ....--+.+-.-++.-+.|+|+.|.++++
T Consensus 188 ~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 188 KLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 3445555554 4456899999999 78999996443 33333345556666689999999988763
No 26
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=39.47 E-value=50 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=28.1
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
.||+.++. +.+|+|++ |++-.+ .......+.=|+.+|..|.+.
T Consensus 256 ~v~~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 256 VTDEGMRT-SVPGVFAAGDVRDKG----YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred EECCCCcc-CCCCEEEeecccCcc----hhhhhhhhhhHHHHHHHHHhh
Confidence 46777775 89999999 655421 123445667777888777653
No 27
>PRK07121 hypothetical protein; Validated
Probab=37.33 E-value=76 Score=26.48 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=32.2
Q ss_pred ccCC-CeEec-----cCCeEEec---CCCCCC-CCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 66 VNYK-LQVHG-----LENVRIAD---ASVMPY-TVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 66 VD~~-~~V~G-----v~nL~V~D---aSv~P~-~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
+|.+ +||.. +.|||.+. ++++-. -++++.....+..+..+++.+.++
T Consensus 434 id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 434 VDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred ECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 5555 55554 78999995 344432 235778888888999888887654
No 28
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=30.06 E-value=72 Score=22.52 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=16.0
Q ss_pred CCCCCCCCCCh----HHHHHHHHHHHHHHHH
Q psy3537 84 SVMPYTVNANI----HATCVMIGEKCADLIK 110 (117)
Q Consensus 84 Sv~P~~~~~np----~~t~~~~a~r~a~~i~ 110 (117)
+-+|.....+. +++++..|+|+++.|-
T Consensus 34 ~~~p~~~d~e~vaA~~a~~~g~~er~~~~l~ 64 (119)
T COG2018 34 AELPGNVDAEIVAAMAATALGLAERAADELG 64 (119)
T ss_pred ecCCCcccHHHHHHHHHHHHHHhHHHHHHhC
Confidence 33555555444 5667777777777663
No 29
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=29.41 E-value=73 Score=27.33 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=37.2
Q ss_pred ccccCCccccCCCCCccccCCCeEeccCCeEEec---CCCCCC-CCC-CChHHHHHHHHHHHHHHHHHH
Q psy3537 49 YHLSSTARMGDNILTSVVNYKLQVHGLENVRIAD---ASVMPY-TVN-ANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 49 ~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~D---aSv~P~-~~~-~np~~t~~~~a~r~a~~i~~~ 112 (117)
++..|..+. ++..-|+|.++++ +.|||.+. ++++-. -++ ++.....+..+..+++.+.++
T Consensus 492 ~~T~GGl~i--d~~~qVld~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 492 LGTKGGLRT--DVRGRVLRDDGSV--IEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred ceeCCCceE--CCCceEECCCCCC--cCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 344444444 4455677777765 78999993 234432 222 556677788888888877543
No 30
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=29.01 E-value=88 Score=25.73 Aligned_cols=50 Identities=12% Similarity=-0.104 Sum_probs=30.4
Q ss_pred CCccccCCCeEeccCCeEEec---CC-CCCC-CCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 62 LTSVVNYKLQVHGLENVRIAD---AS-VMPY-TVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 62 ~~~VVD~~~~V~Gv~nL~V~D---aS-v~P~-~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
..-|+|.++++ ++|||.+. ++ ++-. -++++..+..+..+..+++.+.+..
T Consensus 407 ~~~vl~~~g~~--I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~ 461 (466)
T PRK08274 407 DARVRFADGRP--SPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHA 461 (466)
T ss_pred CceEECCCCCC--CCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 33445555443 79999995 33 5532 2345666666777777777765543
No 31
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=27.96 E-value=1.8e+02 Score=24.54 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=30.1
Q ss_pred ccccCCCeEeccCCeEEec---CCCCC-CCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 64 SVVNYKLQVHGLENVRIAD---ASVMP-YTVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 64 ~VVD~~~~V~Gv~nL~V~D---aSv~P-~~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
-|+|.++++ ++|||.+. ++++- .-++++..+.++..+..+++.+.+.
T Consensus 452 qVld~~g~p--I~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 452 EVLKKDGSP--ITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred eEEcCCCCE--eCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 344444443 78999993 34442 2345677888888888888877554
No 32
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=27.23 E-value=1.1e+02 Score=25.01 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=32.0
Q ss_pred CCCCccccCCCeEeccCCeEEec---C-CCCCCC-CCCChHHHHHHHHHHHHHHHHHH
Q psy3537 60 NILTSVVNYKLQVHGLENVRIAD---A-SVMPYT-VNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 60 ~~~~~VVD~~~~V~Gv~nL~V~D---a-Sv~P~~-~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
+...-|+|.++++ ++|||.+. + +++-.. .+++.....+..+..+++.+.+.
T Consensus 374 d~~~~Vl~~~g~~--I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 374 DATARVRLNDAVA--PDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCceEECCCCCC--CCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4445566666664 58999996 2 233221 23566677788888888877554
No 33
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=26.61 E-value=78 Score=25.51 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=30.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCC----hHH-HHHHHHHHHHHHHH
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNAN----IHA-TCVMIGEKCADLIK 110 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~n----p~~-t~~~~a~r~a~~i~ 110 (117)
+||++++. ..+|+|.+ |...+|.. .+. +++ ..+.-|..+|+.|.
T Consensus 258 ~vd~~~~t-s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 258 VIDEACRT-CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred EECCCCcc-CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhc
Confidence 58888887 78999999 88777754 332 222 35556677777764
No 34
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=25.26 E-value=1.9e+02 Score=24.64 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=34.5
Q ss_pred cccCCccccCCCCCccccCCCeEeccCCeEEe--cCCCC------CCCCCCChHHHHHHHHHHHHHHHH
Q psy3537 50 HLSSTARMGDNILTSVVNYKLQVHGLENVRIA--DASVM------PYTVNANIHATCVMIGEKCADLIK 110 (117)
Q Consensus 50 H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~--DaSv~------P~~~~~np~~t~~~~a~r~a~~i~ 110 (117)
+..|..+. +...-|+|.++++ +.|||.+ +++++ +....++.....+..+..+++.+.
T Consensus 483 ~T~GGl~i--d~~~qVld~dg~p--IpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa 547 (549)
T PRK12834 483 KTLGGLET--DLDSRVLGADGTP--LPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAA 547 (549)
T ss_pred EEccCEeE--CCCCceeCCCCCE--eCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHh
Confidence 33444443 4555677777766 6899999 33221 112235567777888888877654
No 35
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=22.86 E-value=32 Score=24.06 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCHHHHHHHHhcccC-ccccccCCccc--cCCCCCccccCCCeEeccCCeEEecCCC
Q psy3537 32 DSDDYWKCTIKRRSS-SYYHLSSTARM--GDNILTSVVNYKLQVHGLENVRIADASV 85 (117)
Q Consensus 32 ~~~~~~~~~i~~~~~-~~~H~~GT~~M--g~~~~~~VVD~~~~V~Gv~nL~V~DaSv 85 (117)
.+.+++++++.+.-. ..-|..--|.= + .-..+.+=--++..|.+|++|.|||.
T Consensus 78 p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~-g~~A~r~~~~l~~~G~~~v~ildGG~ 133 (138)
T cd01445 78 PSEAEFAAMFEAKGIDLDKHLIATDGDDLG-GFTACHIALAARLCGHPDVAILDGGF 133 (138)
T ss_pred CCHHHHHHHHHHcCCCCCCeEEEECCCCCc-chHHHHHHHHHHHcCCCCeEEeCCCH
Confidence 345677777765432 22333322310 0 00001222246788999999999985
No 36
>PRK08275 putative oxidoreductase; Provisional
Probab=22.79 E-value=1.9e+02 Score=24.74 Aligned_cols=56 Identities=16% Similarity=0.016 Sum_probs=34.4
Q ss_pred ccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy3537 47 SYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIK 110 (117)
Q Consensus 47 ~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~ 110 (117)
...|.+|...||- =.||.+++- .++|||.+.-... .+.|..+..+..|.++++.+.
T Consensus 346 ~~~~~~g~~~~Gg----i~~d~~~~t-~i~gl~a~Ge~~~---~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 346 SEIGFCSGHSASG----VWVNEKAET-TVPGLYAAGDMAS---VPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CCceeecccccCc----EEECCCCcc-CCCCEEECcccCC---chhHHHHHHHHHHHHHHHHHH
Confidence 3456667677762 356877774 6999999944322 113555556666666666553
No 37
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=22.53 E-value=83 Score=21.24 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 82 DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 82 DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
||.|+|..|-..|..+--.+...+.+.|.+.+
T Consensus 1 ~gri~~l~pl~~P~~s~~~v~~wa~~ai~~~f 32 (108)
T PF11393_consen 1 NGRIIPLVPLDEPAVSDAEVLQWAQEAITAAF 32 (108)
T ss_pred CCceeecCCCCCcccCHHHHHHHHHHHHHHHh
Confidence 68899999999998888888888888777654
No 38
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=21.14 E-value=1.6e+02 Score=23.90 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=27.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCC----hH-HHHHHHHHHHHHHHH
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNAN----IH-ATCVMIGEKCADLIK 110 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~n----p~-~t~~~~a~r~a~~i~ 110 (117)
.||+.++. ..+|+|++ |+.-+|...... |. .....-|..+|+.|.
T Consensus 252 ~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 252 WVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred EECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 46777775 78999999 887776654332 11 223344555555553
No 39
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=20.41 E-value=3.1e+02 Score=24.19 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=31.4
Q ss_pred ccCCCeEe---------ccCCeEEecCCCC--CCC---CCCChHHHHHHHHHHHHHHHHHH
Q psy3537 66 VNYKLQVH---------GLENVRIADASVM--PYT---VNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 66 VD~~~~V~---------Gv~nL~V~DaSv~--P~~---~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
+|.+++|. .++|||.+.--.. ..- .++|..+..+..|.++++.+.+.
T Consensus 405 vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 405 TNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred cCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 67777763 4899999943221 111 23578888888899998887543
No 40
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.37 E-value=2.9e+02 Score=23.99 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.7
Q ss_pred cc-ccCCCeEe--------ccCCeEEecCCCCCC-----CCCCChHHHHHHHHHHHHHHHHH
Q psy3537 64 SV-VNYKLQVH--------GLENVRIADASVMPY-----TVNANIHATCVMIGEKCADLIKQ 111 (117)
Q Consensus 64 ~V-VD~~~~V~--------Gv~nL~V~DaSv~P~-----~~~~np~~t~~~~a~r~a~~i~~ 111 (117)
|+ +|.+++|. .++|||.+.-...-. -.++|..+..+..|.++++.+.+
T Consensus 363 Gi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 363 GIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred CeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44 67777774 389999984322211 12347778888888888887643
Done!