Query psy3537
Match_columns 117
No_of_seqs 103 out of 1115
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 19:13:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9t_A Choline dehydrogenase a 100.0 6.5E-33 2.2E-37 233.8 9.3 111 1-115 464-575 (577)
2 3fim_B ARYL-alcohol oxidase; A 100.0 2E-32 6.8E-37 230.4 8.9 108 1-112 456-565 (566)
3 3qvp_A Glucose oxidase; oxidor 100.0 1.2E-32 4.3E-37 232.6 7.3 111 1-115 468-581 (583)
4 1gpe_A Protein (glucose oxidas 100.0 4E-32 1.4E-36 228.3 7.4 111 2-116 473-586 (587)
5 3t37_A Probable dehydrogenase; 100.0 2E-31 6.9E-36 217.3 8.9 103 2-110 419-521 (526)
6 2jbv_A Choline oxidase; alcoho 100.0 3.8E-31 1.3E-35 220.4 8.4 109 2-114 422-531 (546)
7 1kdg_A CDH, cellobiose dehydro 100.0 5E-30 1.7E-34 212.0 7.2 87 27-114 458-544 (546)
8 1ju2_A HydroxynitrIle lyase; f 99.9 3.9E-28 1.3E-32 201.9 9.1 107 2-114 404-519 (536)
9 1n4w_A CHOD, cholesterol oxida 99.9 2.9E-24 9.8E-29 176.9 5.5 67 44-115 436-502 (504)
10 1coy_A Cholesterol oxidase; ox 99.9 4.5E-23 1.5E-27 170.0 6.4 65 44-113 441-505 (507)
11 3pl8_A Pyranose 2-oxidase; sub 99.9 5.9E-22 2E-26 167.8 7.1 70 46-115 544-615 (623)
12 3hyw_A Sulfide-quinone reducta 83.6 2.3 7.9E-05 33.4 6.0 50 65-114 276-333 (430)
13 4g6h_A Rotenone-insensitive NA 81.2 1.1 3.9E-05 36.3 3.4 44 65-111 354-398 (502)
14 4dgk_A Phytoene dehydrogenase; 73.9 1.5 5.2E-05 34.5 2.1 43 68-114 450-492 (501)
15 3f8d_A Thioredoxin reductase ( 73.5 7.6 0.00026 27.9 5.7 46 65-113 270-316 (323)
16 3h28_A Sulfide-quinone reducta 67.7 12 0.0004 29.1 6.0 50 65-114 276-333 (430)
17 3sx6_A Sulfide-quinone reducta 66.2 13 0.00044 29.0 6.0 49 65-113 287-343 (437)
18 3h8l_A NADH oxidase; membrane 64.0 13 0.00044 28.5 5.5 47 64-113 288-335 (409)
19 1fl2_A Alkyl hydroperoxide red 55.7 25 0.00087 25.2 5.6 44 65-113 260-304 (310)
20 3r9u_A Thioredoxin reductase; 52.5 27 0.00093 24.9 5.3 45 65-114 267-312 (315)
21 2q0l_A TRXR, thioredoxin reduc 51.1 31 0.001 24.8 5.4 45 65-114 264-309 (311)
22 3vrd_B FCCB subunit, flavocyto 50.1 33 0.0011 25.9 5.6 46 65-113 275-323 (401)
23 3lzw_A Ferredoxin--NADP reduct 46.6 33 0.0011 24.6 5.0 46 65-113 268-314 (332)
24 2ywl_A Thioredoxin reductase r 45.9 44 0.0015 22.1 5.3 43 66-113 127-170 (180)
25 4at0_A 3-ketosteroid-delta4-5a 44.4 24 0.00084 28.1 4.3 49 60-110 455-507 (510)
26 2q7v_A Thioredoxin reductase; 43.6 49 0.0017 23.9 5.6 44 65-113 267-311 (325)
27 1vdc_A NTR, NADPH dependent th 43.3 44 0.0015 24.2 5.3 45 65-113 277-322 (333)
28 3ab1_A Ferredoxin--NADP reduct 41.1 46 0.0016 24.6 5.1 46 65-113 281-327 (360)
29 2zbw_A Thioredoxin reductase; 40.1 52 0.0018 23.8 5.2 46 65-113 270-316 (335)
30 1lqt_A FPRA; NADP+ derivative, 36.5 26 0.00088 27.8 3.2 45 65-113 341-386 (456)
31 3cty_A Thioredoxin reductase; 35.4 79 0.0027 22.7 5.6 45 65-114 271-316 (319)
32 2a87_A TRXR, TR, thioredoxin r 34.0 79 0.0027 23.0 5.4 45 65-113 270-315 (335)
33 4a9w_A Monooxygenase; baeyer-v 32.9 46 0.0016 24.0 3.9 47 65-113 303-351 (357)
34 3fbs_A Oxidoreductase; structu 32.2 83 0.0028 22.0 5.1 44 65-114 248-292 (297)
35 1qo8_A Flavocytochrome C3 fuma 31.8 63 0.0022 26.1 4.9 47 66-112 507-562 (566)
36 1trb_A Thioredoxin reductase; 31.0 87 0.003 22.3 5.1 38 72-113 275-313 (320)
37 1hyu_A AHPF, alkyl hydroperoxi 27.4 1.1E+02 0.0037 24.5 5.5 44 65-113 471-515 (521)
38 1cjc_A Protein (adrenodoxin re 27.2 44 0.0015 26.5 3.1 46 65-114 349-395 (460)
39 3itj_A Thioredoxin reductase 1 24.6 1.9E+02 0.0065 20.5 6.0 43 67-114 292-335 (338)
40 1y56_A Hypothetical protein PH 24.5 1.3E+02 0.0043 23.8 5.4 42 65-114 335-377 (493)
41 1d4d_A Flavocytochrome C fumar 23.9 70 0.0024 26.0 3.8 47 66-112 512-568 (572)
42 3ntd_A FAD-dependent pyridine 23.5 86 0.003 24.9 4.2 47 64-111 285-337 (565)
43 1y0p_A Fumarate reductase flav 22.4 99 0.0034 24.9 4.4 47 66-112 512-567 (571)
44 3nlc_A Uncharacterized protein 21.5 75 0.0026 26.2 3.5 44 65-113 498-542 (549)
45 2cul_A Glucose-inhibited divis 20.8 1.3E+02 0.0045 20.9 4.4 34 74-113 197-231 (232)
46 2bc0_A NADH oxidase; flavoprot 20.6 1E+02 0.0035 24.2 4.0 46 65-111 309-360 (490)
No 1
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=99.98 E-value=6.5e-33 Score=233.78 Aligned_cols=111 Identities=31% Similarity=0.433 Sum_probs=103.4
Q ss_pred ChHHHHHH-cCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeE
Q psy3537 1 MNDLNTME-MTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVR 79 (117)
Q Consensus 1 ~~~~~~i~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~ 79 (117)
+|.+++|+ ++++|+++...+. .|+....+|++|++|+|+...+.+|++|||+||+++.+||||++|||||++|||
T Consensus 464 ~~~~~~i~~~~~~~~~~~~~e~----~p~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~Lr 539 (577)
T 3q9t_A 464 IRFSYDLLFKGEGFKDLVESEY----PWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLR 539 (577)
T ss_dssp HHHHHHHHHHSTTGGGTEEEEE----SSCCCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTTTCSBCTTCBBTTCBSEE
T ss_pred HHHHHHHHHhChhhhhcccccc----CCCCCcCCHHHHHHHHHhccccccccccceecCCCCCCceECCCCeEeCCCCcE
Confidence 36789999 9999999887665 377788999999999999999999999999999988899999999999999999
Q ss_pred EecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537 80 IADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK 115 (117)
Q Consensus 80 V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~ 115 (117)
|+|+||||.+|++||++|+||+|||+||.|++++++
T Consensus 540 VvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~~~~ 575 (577)
T 3q9t_A 540 VADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHKD 575 (577)
T ss_dssp ECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred EeecccccCCCCCccHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999998864
No 2
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=99.97 E-value=2e-32 Score=230.37 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=100.1
Q ss_pred ChHHHHHHcCcccccCcccccccccCCC-CCCCCHHHHHHHHhcccCccccccCCccccCCCCC-ccccCCCeEeccCCe
Q psy3537 1 MNDLNTMEMTLNFLNWPKTMVDAIVCDG-FHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILT-SVVNYKLQVHGLENV 78 (117)
Q Consensus 1 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~-~VVD~~~~V~Gv~nL 78 (117)
+|.+++|+++++|+++...+. .|+ ....+|++|++|+|+...+.+|++|||+||+++.+ +|||++|||||++||
T Consensus 456 ~~~~~~i~~~~~~~~~~~~~~----~P~~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~L 531 (566)
T 3fim_B 456 VKSNLRFLSGQAWADFVIRPF----DPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGL 531 (566)
T ss_dssp HHHHHHHHTSGGGTTTEEEES----SGGGSCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSE
T ss_pred HHHHHHHHhCcccCCcccccc----CCCcccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCc
Confidence 378899999999999986655 376 67889999999999999999999999999997777 999999999999999
Q ss_pred EEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 79 RIADASVMPYTVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 79 ~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
||+|+||||.++++||++|+||+|||+||.|+++
T Consensus 532 rVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~ 565 (566)
T 3fim_B 532 RIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565 (566)
T ss_dssp EECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred EEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999875
No 3
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=99.97 E-value=1.2e-32 Score=232.55 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=100.4
Q ss_pred ChHHHHHHcCcccccCcccccccccCCCCC---CCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCC
Q psy3537 1 MNDLNTMEMTLNFLNWPKTMVDAIVCDGFH---YDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLEN 77 (117)
Q Consensus 1 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~n 77 (117)
+|.+|+|+++++|+++...+.. |+.. ..+|++|++|+|+...+.+|++|||+||+++.++|||++|||||++|
T Consensus 468 ~~~~~~i~~~~~~~~~~~~~~~----pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~ 543 (583)
T 3qvp_A 468 TQLARNISNSGAMQTYFAGETI----PGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQG 543 (583)
T ss_dssp HHHHHHHHTSTTHHHHEEEEEE----SGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBS
T ss_pred HHHHHHHHhCcchhhccccccC----CCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCCCceECCCCeEecCCC
Confidence 3788999999999988765432 5432 47899999999999999999999999999878899999999999999
Q ss_pred eEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537 78 VRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK 115 (117)
Q Consensus 78 L~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~ 115 (117)
|||+|+||||.++++||++|+||+|||+||.|++++++
T Consensus 544 LrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~~~ 581 (583)
T 3qvp_A 544 LRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYAS 581 (583)
T ss_dssp EEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeecccCCCCCCcCcHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999864
No 4
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=99.97 E-value=4e-32 Score=228.30 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=100.9
Q ss_pred hHHHHHHcCcccccCcccccccccCCCCCC---CCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCe
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHY---DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENV 78 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL 78 (117)
|.+++|+++++|+++...+.. |+... .+|++|++|+|+...+.+|++|||+||+++.+||||++|||||++||
T Consensus 473 ~~~~~i~~~~~~~~~~~~~~~----pg~~~~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~~sVVD~~lrV~Gv~nL 548 (587)
T 1gpe_A 473 KLARDLTSQGAMKEYFAGETL----PGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGL 548 (587)
T ss_dssp HHHHHHHTSTTHHHHEEEEEE----SGGGSCTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSE
T ss_pred HHHHHHHcCcchhhhcccccC----CCccccCCCCHHHHHHHHHHhcCcccCccCccccCCCCCCceECCCCEEECCCCc
Confidence 678999999999988765432 54443 79999999999999999999999999998889999999999999999
Q ss_pred EEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhc
Q psy3537 79 RIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKS 116 (117)
Q Consensus 79 ~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~~ 116 (117)
||+|+||||+++++||++|+||+|||+||.|++++++|
T Consensus 549 rVvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~~~~~ 586 (587)
T 1gpe_A 549 RVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKS 586 (587)
T ss_dssp EECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeccCCCCCCcchHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999998775
No 5
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=99.97 E-value=2e-31 Score=217.28 Aligned_cols=103 Identities=26% Similarity=0.343 Sum_probs=93.1
Q ss_pred hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEe
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIA 81 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~ 81 (117)
|.+++|+++++|+.+...+. .|+. ..+++++++|+|+...+.+|++|||+||+++ +||||++|||||++||||+
T Consensus 419 ~~~r~i~~~~~~~~~~~~~~----~pg~-~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d~-~sVVD~~~rV~Gv~nL~Vv 492 (526)
T 3t37_A 419 EASRTIGHRDELAGWREREL----LPGT-PNSAAEMDDFIARSVITHHHPCGTCRMGKDP-DAVVDANLRLKALDNLFVV 492 (526)
T ss_dssp HHHHHHHTCGGGTTTEEEEC----SSCC-CCSHHHHHHHHHHHEEECSCCBCTTCBCSST-TCSBCTTCBBTTCSSEEEC
T ss_pred HHHHHHHcChhhhhcccccc----CCCC-CCCHHHHHHHHHhcCccCcccCccccCCCCC-CccCCCCCEEcCCCCeEEE
Confidence 67889999999999887655 2653 3689999999999999999999999999765 8999999999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy3537 82 DASVMPYTVNANIHATCVMIGEKCADLIK 110 (117)
Q Consensus 82 DaSv~P~~~~~np~~t~~~~a~r~a~~i~ 110 (117)
|+||||+++++||++|+||||||+||+--
T Consensus 493 DaSv~P~~~~~np~~ti~aiAEkaAd~~~ 521 (526)
T 3t37_A 493 DASIMPNLTAGPIHAAVLAIAETFARQYH 521 (526)
T ss_dssp SGGGCSSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred EcCcccCCcChHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999753
No 6
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=99.97 E-value=3.8e-31 Score=220.38 Aligned_cols=109 Identities=31% Similarity=0.502 Sum_probs=96.6
Q ss_pred hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccC-CCCCccccCCCeEeccCCeEE
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVRI 80 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL~V 80 (117)
|.+++|+++++|+++...+. .|+....+|++|++|+++...+.+|++|||+||+ ++.++|||++|||||++||||
T Consensus 422 ~~~~~i~~~~~~~~~~~~~~----~p~~~~~sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrV 497 (546)
T 2jbv_A 422 RKAREIAAQPAMAEWTGREL----SPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRV 497 (546)
T ss_dssp HHHHHHHTSGGGTTTEEEEE----ESCTTCCSHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEE
T ss_pred HHHHHHHcCcchhhcccccc----cCCCCCCCHHHHHHHHHhcCCcccccccccccCCCCCCCceECCCCEEECCCCeEE
Confidence 67899999999998876544 3777888999999999999999999999999997 678899999999999999999
Q ss_pred ecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 81 ADASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 81 ~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
+|+||||+++++||++|+||+|||+||.|++++.
T Consensus 498 vDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~ 531 (546)
T 2jbv_A 498 ADASVMPEHVTVNPNITVMMIGERCADLIRSARA 531 (546)
T ss_dssp CSGGGCSSCCSSCCHHHHHHHHHHHHHHC-----
T ss_pred eecccCCCCCCcchHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998874
No 7
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=99.96 E-value=5e-30 Score=211.97 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHH
Q psy3537 27 DGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCA 106 (117)
Q Consensus 27 p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a 106 (117)
|+. ..+++++++|+++...+.+|++|||+||+++.++|||++|||||++||||+|+||||+++++||++|+||+|||+|
T Consensus 458 p~~-~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraA 536 (546)
T 1kdg_A 458 PDV-TQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAA 536 (546)
T ss_dssp SCT-TSCHHHHHHHSCGGGGCCSCCBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHhcCcccccccceecCCCCCCeeECCCCeEccCCCcEEeEecccCCCCCccHHHHHHHHHHHHH
Confidence 443 3678999999999889999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy3537 107 DLIKQYWE 114 (117)
Q Consensus 107 ~~i~~~~~ 114 (117)
|.|+++++
T Consensus 537 d~I~~~~~ 544 (546)
T 1kdg_A 537 AKILALAG 544 (546)
T ss_dssp HHHHHSTT
T ss_pred HHHHhhcC
Confidence 99998875
No 8
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=99.95 E-value=3.9e-28 Score=201.86 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=90.3
Q ss_pred hHHHHHHcCcccccCcccccc-ccc-------CCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEe
Q psy3537 2 NDLNTMEMTLNFLNWPKTMVD-AIV-------CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVH 73 (117)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~~~~-~~~-------~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~ 73 (117)
|.+++|+++++|+++...+.. .+. .|. ...+|++|++|+|+...+.+|++|||+|| +|||++||||
T Consensus 404 ~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~p~-~~~~d~~~~~~ir~~~~t~~H~~GTcrMG-----~VVD~~lrV~ 477 (536)
T 1ju2_A 404 KKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPK-DQTDDAAFETFCRESVASYWHYHGGCLVG-----KVLDGDFRVT 477 (536)
T ss_dssp HHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCS-CTTCHHHHHHHHHHHCEECSCCEESSCBT-----TTBCTTSBBT
T ss_pred HHHHHHHcCccchhhhccccccCCCccccccCCCc-ccCCHHHHHHHHHhccCccccCcCccCCc-----cEECCCCeEc
Confidence 678999999999988765420 000 021 24689999999999999999999999999 6999999999
Q ss_pred ccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHH-HHhh
Q psy3537 74 GLENVRIADASVMPYTVNANIHATCVMIGEKCADLIK-QYWE 114 (117)
Q Consensus 74 Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~-~~~~ 114 (117)
|++||||+|+||||.++++||++|+||+|||+|+.|+ ++|+
T Consensus 478 Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~~~ 519 (536)
T 1ju2_A 478 GINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSA 519 (536)
T ss_dssp TCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999887765 4443
No 9
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=99.89 E-value=2.9e-24 Score=176.86 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=63.2
Q ss_pred ccCccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537 44 RSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK 115 (117)
Q Consensus 44 ~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~ 115 (117)
...+.+|++|||+|| +|||++|||||++||||+|+||||+++++||++|+||+|||+||.|++++.+
T Consensus 436 ~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~~ 502 (504)
T 1n4w_A 436 ADDFCYHPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 502 (504)
T ss_dssp ECSEESSCBCSSCTT-----TTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCccccccCCceee-----eEECCCCeEeccCCeEEeeccccCCCCCcChHHHHHHHHHHHHHHHHHhhcc
Confidence 456889999999999 7999999999999999999999999999999999999999999999998864
No 10
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=99.87 E-value=4.5e-23 Score=170.03 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=61.3
Q ss_pred ccCccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 44 RSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 44 ~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
...+++|++|||+|| +|||++|||||++||||+|+||||+++++||++|+||+|||+||.|+++.
T Consensus 441 ~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd~I~~~~ 505 (507)
T 1coy_A 441 GDDFTYHPLGGVLLN-----KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSD 505 (507)
T ss_dssp BCSEESCCBCSSCTT-----TTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccCCcchh-----heECCCCeEeccCCeEEeechhccCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999 49999999999999999999999999999999999999999999998764
No 11
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=99.85 E-value=5.9e-22 Score=167.78 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=66.7
Q ss_pred CccccccCCccccCC-CCCccc-cCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537 46 SSYYHLSSTARMGDN-ILTSVV-NYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK 115 (117)
Q Consensus 46 ~~~~H~~GT~~Mg~~-~~~~VV-D~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~ 115 (117)
.+++|++|||+||.+ +.+||| |+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|++++++
T Consensus 544 ~~~~H~~gt~~mg~~~~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~~~ 615 (623)
T 3pl8_A 544 GLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTP 615 (623)
T ss_dssp TTTCCCBCTTCBCSSTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCcccCCCceeCCCCCCCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHhhc
Confidence 357999999999997 899998 9999999999999999999999999999999999999999999999865
No 12
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=83.59 E-value=2.3 Score=33.36 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=37.4
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCC-----CCCh--HHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTV-----NANI--HATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~-----~~np--~~t~~~~a~r~a~~i~~~~~ 114 (117)
+||+.+|+-+.+|+|.+ |++-+|... ...| ......-|.-+|+.|.+++.
T Consensus 276 ~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~ 333 (430)
T 3hyw_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999 998888642 2222 33456678888888887653
No 13
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=81.20 E-value=1.1 Score=36.33 Aligned_cols=44 Identities=25% Similarity=0.168 Sum_probs=34.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQ 111 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~ 111 (117)
+||+.+|+.+.+|+|.+ |++..|..+.+ -..+.-|..+|+.|..
T Consensus 354 ~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a---~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 354 AVNDFLQVKGSNNIFAIGDNAFAGLPPTA---QVAHQEAEYLAKNFDK 398 (502)
T ss_dssp EBCTTSBBTTCSSEEECGGGEESSSCCCH---HHHHHHHHHHHHHHHH
T ss_pred eECCccccCCCCCEEEEEcccCCCCCCch---HHHHHHHHHHHHHHHH
Confidence 58999999999999999 99888866643 2345667777777754
No 14
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=73.87 E-value=1.5 Score=34.49 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=23.7
Q ss_pred CCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 68 YKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 68 ~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
+..+...++|||.|.+|++|-. . ..-++.-|..+|+.|.+++.
T Consensus 450 P~~~~t~i~gLyl~G~~t~pG~---G-v~ga~~SG~~aA~~il~dL~ 492 (501)
T 4dgk_A 450 PHNRDKTITNLYLVGAGTHPGA---G-IPGVIGSAKATAGLMLEDLI 492 (501)
T ss_dssp ------CCTTEEECCCH----------HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCEEEECCCCCCcc---c-HHHHHHHHHHHHHHHHHHhc
Confidence 3344567899999999988731 1 11223448999999998874
No 15
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=73.52 E-value=7.6 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=31.5
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.||++++. .++|||++ |+.-.| +........+.-|..+|..|.+.+
T Consensus 270 ~vd~~~~t-~~~~vya~GD~~~~~--~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 270 KVDEWMRT-SVPGVFAAGDCTSAW--LGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp CCCTTCBC-SSTTEEECSTTBSTT--TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcee-cCCCEEEcceecCCC--CcccceeehhhHHHHHHHHHHHHH
Confidence 46777775 78999999 776665 233445556666777777776655
No 16
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=67.69 E-value=12 Score=29.07 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=35.7
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCC-------CCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTV-------NANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~-------~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
.||+.+|.-+.+|+|.+ |+.-+|... ..........-|..+|+.|.+.+.
T Consensus 276 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~ 333 (430)
T 3h28_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCccccCCCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 57788888899999999 877776421 112345566778888888887663
No 17
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=66.20 E-value=13 Score=28.97 Aligned_cols=49 Identities=14% Similarity=0.029 Sum_probs=35.3
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCC-----C--CChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTV-----N--ANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~-----~--~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.||+.+|.-+.+|+|.+ |+.-+|... . .........-|..+|+.|.+.+
T Consensus 287 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l 343 (437)
T 3sx6_A 287 LVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL 343 (437)
T ss_dssp CBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 57888888899999999 887776421 1 1234556667788888888775
No 18
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=63.96 E-value=13 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=33.3
Q ss_pred ccccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 64 SVVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 64 ~VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
=.||+.+|+.+.+|+|++ |++-+|.. ........-|..+|..|...+
T Consensus 288 i~vd~~~~~~~~~~vfa~GD~~~~~~~---~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 288 IPTDLNMVSIKYDNVYAVGDANSMTVP---KLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp BCBBTTSBBSSCTTEEECGGGBTTCCS---CCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCcccccCCCCCEEEeehhccCCCC---cHHHHHHHHHHHHHHHHHHHh
Confidence 357888888899999999 77665422 233445666777888887765
No 19
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=55.65 E-value=25 Score=25.22 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=30.5
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||++++ -.++|+|++ |+.-.|. ......+.-|..+|..|.+.+
T Consensus 260 ~vd~~~~-t~~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 260 IIDAKCE-TNVKGVFAAGDCTTVPY----KQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp CCCTTCB-CSSTTEEECSTTBSCSS----CCHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCc-cCCCCEEEeecccCCcc----hhhhhhHhhHHHHHHHHHHHH
Confidence 5677777 578899999 6665542 234455667788888887665
No 20
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=52.47 E-value=27 Score=24.88 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=30.2
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
.||+.++. .++|+|++ |+.-.| .......+.-|..+|..|.+.+.
T Consensus 267 ~vd~~~~t-~~~~v~a~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 312 (315)
T 3r9u_A 267 SVDLKMQT-SVAGLFAAGDLRKDA----PKQVICAAGDGAVAALSAMAYIE 312 (315)
T ss_dssp CCCTTCBC-SSTTEEECGGGBTTC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCccc-CCCCEEEeecccCCc----hhhhhhHHhhHHHHHHHHHHHHH
Confidence 57777776 88999999 654322 23344556677888888776553
No 21
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=51.07 E-value=31 Score=24.79 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=29.4
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
+||++++. .++|+|++ |+.-.| .......+.-|..+|..|.+.+.
T Consensus 264 ~vd~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 309 (311)
T 2q0l_A 264 VVDFSMKT-NVQGLFAAGDIRIFA----PKQVVCAASDGATAALSVISYLE 309 (311)
T ss_dssp CCCTTCBC-SSTTEEECSTTBTTC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccc-CCCCeEEcccccCcc----hHHHHHHHHhHHHHHHHHHHHHh
Confidence 56777775 78999999 665442 11234455667788888876654
No 22
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=50.11 E-value=33 Score=25.94 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=31.7
Q ss_pred cccCC-CeEeccCCeEEe-cCC-CCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYK-LQVHGLENVRIA-DAS-VMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~-~~V~Gv~nL~V~-DaS-v~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.||++ +|.-+.+|+|.+ |+. ..|... .......-|.-+|+.|.+.+
T Consensus 275 ~VD~~tl~~t~~p~VfAiGDva~~~~~pk---~a~~A~~qa~v~A~ni~~~l 323 (401)
T 3vrd_B 275 PVDIRTFESSLQPGIHVIGDACNAAPMPK---SAYSANSQAKVAAAAVVALL 323 (401)
T ss_dssp CBCTTTCBBSSSTTEEECGGGBCCTTSCB---SHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcceecCCCCEEEecccccCCCCCc---hHHHHHHHHHHHHHHHHHHh
Confidence 57876 788999999999 754 344332 23445666777888887765
No 23
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=46.58 E-value=33 Score=24.60 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=29.1
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.||+.++. .++|||++ |+.-+|..+ ......+.-|..+|..|.+.+
T Consensus 268 ~vd~~~~t-~~~~vya~GD~~~~~~~~--~~~~~A~~~g~~aa~~i~~~l 314 (332)
T 3lzw_A 268 VVKSTMET-NIEGFFAAGDICTYEGKV--NLIASGFGEAPTAVNNAKAYM 314 (332)
T ss_dssp ECCTTSBC-SSTTEEECGGGEECTTCC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCce-ecCCEEEccceecCCCCc--ceEeeehhhHHHHHHHHHHhh
Confidence 46777775 78999999 665554322 123344455777777776655
No 24
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=45.89 E-value=44 Score=22.05 Aligned_cols=43 Identities=12% Similarity=-0.201 Sum_probs=28.4
Q ss_pred ccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 66 VNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 66 VD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
||+.++. ..+|+|++ |..-.|. + .....+.-|..+|..|...+
T Consensus 127 vd~~~~t-~~~~i~a~GD~~~~~~-~---~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 127 TDEGGRT-SYPRVYAAGVARGKVP-G---HAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp CCTTCBC-SSTTEEECGGGGTCCS-C---CHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCc-CCCCEEEeecccCcch-h---hHHHHHHhHHHHHHHHHHHh
Confidence 6777776 77899998 6655542 1 23345556777787776654
No 25
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=44.37 E-value=24 Score=28.11 Aligned_cols=49 Identities=8% Similarity=0.023 Sum_probs=34.0
Q ss_pred CCCCccccCCCeEeccCCeEEec---CCCC-CCCCCCChHHHHHHHHHHHHHHHH
Q psy3537 60 NILTSVVNYKLQVHGLENVRIAD---ASVM-PYTVNANIHATCVMIGEKCADLIK 110 (117)
Q Consensus 60 ~~~~~VVD~~~~V~Gv~nL~V~D---aSv~-P~~~~~np~~t~~~~a~r~a~~i~ 110 (117)
+...-|+|.++++ ++|||.+. ++++ ..-+++|..+..+..|.++++.+.
T Consensus 455 d~~~~Vl~~~g~~--I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa 507 (510)
T 4at0_A 455 TVNSEVLHVSGEP--IPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAA 507 (510)
T ss_dssp CTTCEEEBTTSSE--EEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCCC--cCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHH
Confidence 4445566666655 78999994 3565 333467788888888988888764
No 26
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=43.62 E-value=49 Score=23.94 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=28.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||++++. ..+|+|.+ |+.-.| .......+.-|..+|..|...+
T Consensus 267 ~vd~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 267 DVRDEIYT-NIPMLFAAGDVSDYI----YRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp CCBTTTBC-SSTTEEECSTTTCSS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcc-CCCCEEEeecccCcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56777774 67899999 665443 1234455666777777776655
No 27
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=43.30 E-value=44 Score=24.16 Aligned_cols=45 Identities=18% Similarity=0.005 Sum_probs=27.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||++...-..+|+|++ |+.-.| .......+.-|..+|..|.+.+
T Consensus 277 ~vd~~~~~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 322 (333)
T 1vdc_A 277 VTKPGTTQTSVPGVFAAGDVQDKK----YRQAITAAGTGCMAALDAEHYL 322 (333)
T ss_dssp CCCTTSCBCSSTTEEECGGGGCSS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EechhhcccCCCCEEEeeeccCCC----chhHHHHHHhHHHHHHHHHHHH
Confidence 34554444578899999 665544 1234445566777777776655
No 28
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=41.10 E-value=46 Score=24.57 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=29.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||+.++. .++|||++ |+.-+|..+ ......+.-|..+|..|...+
T Consensus 281 ~vd~~~~t-~~~~vya~GD~~~~~~~~--~~~~~A~~~g~~aa~~i~~~l 327 (360)
T 3ab1_A 281 VVDSHMKT-SVDGLYAAGDIAYYPGKL--KIIQTGLSEATMAVRHSLSYI 327 (360)
T ss_dssp ECCTTSBC-SSTTEEECSTTEECTTCC--CSHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCcC-CCCCEEEecCccCCCCcc--ceeehhHHHHHHHHHHHHhhc
Confidence 56777775 78999999 766555321 223334455677777776554
No 29
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=40.13 E-value=52 Score=23.78 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=28.6
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.||++++ -.++|+|++ |+.-+|..+ ......+.-|..+|..|...+
T Consensus 270 ~vd~~~~-t~~~~vya~GD~~~~~~~~--~~~~~A~~~g~~aa~~i~~~l 316 (335)
T 2zbw_A 270 KVDTTMA-TSIPGVYACGDIVTYPGKL--PLIVLGFGEAAIAANHAAAYA 316 (335)
T ss_dssp ECCTTCB-CSSTTEEECSTTEECTTCC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCC-CCCCCEEEeccccccCcch--hhhhhhHHHHHHHHHHHHHHh
Confidence 4666666 367899999 766655322 223334455777777776654
No 30
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=36.47 E-value=26 Score=27.83 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=29.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||..+||-++.|+|++ |+.--|... ..+.+.-|..+|+.|.+++
T Consensus 341 ~vn~~~rvt~~pgvya~GD~~~gp~~~----i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 341 IPNVGGRINGSPNEYVVGWIKRGPTGV----IGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp CCEETTEETTCSSEEECTHHHHCSCSC----TTHHHHHHHHHHHHHHHHH
T ss_pred eECCCCcCCCCCCEEEEeccCCCCchh----HHHHHHHHHHHHHHHHHHH
Confidence 56888998899999999 554334321 1244566777777776654
No 31
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=35.40 E-value=79 Score=22.73 Aligned_cols=45 Identities=22% Similarity=0.040 Sum_probs=28.7
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
+||+.++ -..+|+|++ |+.-.| .......+.-|..+|..|.+.+.
T Consensus 271 ~vd~~~~-t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 271 VVDSRQR-TSVPGVYAAGDVTSGN----FAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp CCCTTCB-CSSTTEEECSTTBTTC----CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCc-cCCCCEEEeecccCcc----hhhHHHHHHHHHHHHHHHHHHhh
Confidence 4566665 467899999 655433 12244556677788888877653
No 32
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=34.01 E-value=79 Score=23.03 Aligned_cols=45 Identities=18% Similarity=0.025 Sum_probs=26.8
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||++...-..+|+|++ |+.-.| .......+.-|..+|..|.+.+
T Consensus 270 ~vd~~~~~t~~~~iya~GD~~~~~----~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 270 LVQGRTTSTSLPGVFAAGDLVDRT----YRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp CCSTTSSBCSSTTEEECGGGTCCS----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCccCCCCEEEeeecCCcc----HHHHHHHHHhHHHHHHHHHHHh
Confidence 34554445578899999 665443 1223444555677777766554
No 33
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=32.87 E-value=46 Score=23.98 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=28.4
Q ss_pred cccCC-CeEeccCCeEEec-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYK-LQVHGLENVRIAD-ASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~-~~V~Gv~nL~V~D-aSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||+. +..-+.+|+|.+. +-+.- +........+.-|..+|..|.+.+
T Consensus 303 ~vd~~~l~~t~~~~vya~Gd~d~~~--~~~~~~~~A~~~g~~~a~~i~~~l 351 (357)
T 4a9w_A 303 EVDGSGLRALAVPSVWLLGYGDWNG--MASATLIGVTRYAREAVRQVTAYC 351 (357)
T ss_dssp CBCTTSCBBSSCTTEEECSSCGGGS--TTCSSTTTHHHHHHHHHHHHHHHT
T ss_pred cccCCcccCCCCCCeEEeccccccc--cchhhhhhhHHHHHHHHHHHHHHH
Confidence 45665 4667899999995 22221 111222235677888888887665
No 34
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=32.21 E-value=83 Score=21.99 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=28.5
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
.||++++ -..+|+|++ |+.-.| ......+.-|..+|..|.+.+.
T Consensus 248 ~vd~~~~-t~~~~vya~GD~~~~~-----~~~~~A~~~g~~aa~~i~~~l~ 292 (297)
T 3fbs_A 248 VTDPMKQ-TTARGIFACGDVARPA-----GSVALAVGDGAMAGAAAHRSIL 292 (297)
T ss_dssp CCCTTCB-CSSTTEEECSGGGCTT-----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCc-cCCCCEEEEeecCCch-----HHHHHHHHhHHHHHHHHHHHHh
Confidence 4566655 467899999 665543 2344556667778887776653
No 35
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=31.84 E-value=63 Score=26.07 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=31.3
Q ss_pred ccCCCeEe-----ccCCeEEec---CCCCC-CCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 66 VNYKLQVH-----GLENVRIAD---ASVMP-YTVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 66 VD~~~~V~-----Gv~nL~V~D---aSv~P-~~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
+|.++||. -++|||.+. ++++- .-+++|..+..+..|.++++.+.+.
T Consensus 507 vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~ 562 (566)
T 1qo8_A 507 INTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKH 562 (566)
T ss_dssp BCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 55555553 378999994 34442 2235677778888888888887654
No 36
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=30.96 E-value=87 Score=22.33 Aligned_cols=38 Identities=18% Similarity=-0.006 Sum_probs=24.9
Q ss_pred EeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 72 VHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 72 V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.-..+|+|++ |+.-.| .......+.-|..+|..|.+.+
T Consensus 275 ~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 313 (320)
T 1trb_A 275 QTSIPGVFAAGDVMDHI----YRQAITSAGTGCMAALDAERYL 313 (320)
T ss_dssp BCSSTTEEECGGGGCSS----SCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEcccccCCc----chhhhhhhccHHHHHHHHHHHH
Confidence 4457899999 665443 1234556667788888887665
No 37
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=27.41 E-value=1.1e+02 Score=24.49 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=29.0
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
+||+.++. .+.|+|.+ |+.-.|. ......+.-|..+|..|.+.+
T Consensus 471 ~Vd~~~~t-s~p~VfA~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 471 IIDAKCET-SVKGVFAAGDCTTVPY----KQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp CCCTTCBC-SSTTEEECSTTBCCSS----CCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCC-CCCCEEEeecccCCCc----ceeeehHHhHHHHHHHHHHHH
Confidence 56777775 78999999 6665552 234455666667777766554
No 38
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=27.21 E-value=44 Score=26.47 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=30.9
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
+||..+|+-++.|+|++ |+.--|.. ...+.+.-|..+|+.|.+++.
T Consensus 349 ~vn~~~rt~~~p~vya~Gd~~~g~~~----~i~~a~~~g~~aa~~i~~~l~ 395 (460)
T 1cjc_A 349 VPNMEGRVVDVPGLYCSGWVKRGPTG----VITTTMTDSFLTGQILLQDLK 395 (460)
T ss_dssp CCEETTEETTCTTEEECTHHHHCTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred eECCCCcCcCCCCEEEEEeCCcCCCc----cHHHHHHHHHHHHHHHHHHHH
Confidence 56888888878999999 55433321 133567777778887776653
No 39
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=24.59 E-value=1.9e+02 Score=20.48 Aligned_cols=43 Identities=14% Similarity=-0.075 Sum_probs=28.2
Q ss_pred cCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 67 NYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 67 D~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
|..++ -..+|+|++ |+.-.| .......+.-|..+|..|.+.+.
T Consensus 292 ~~~~~-t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l~ 335 (338)
T 3itj_A 292 PGSSL-TSVPGFFAAGDVQDSK----YRQAITSAGSGCMAALDAEKYLT 335 (338)
T ss_dssp TTSSB-CSSTTEEECGGGGCSS----CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccccc-cCCCCEEEeeccCCCC----ccceeeehhhhHHHHHHHHHHHh
Confidence 44444 478999999 554422 22345667778888888877664
No 40
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=24.48 E-value=1.3e+02 Score=23.81 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=29.9
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYWE 114 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~ 114 (117)
+||++++ ..+|+|++ |+.-++ ...+.+.-|..+|+.|...++
T Consensus 335 ~vd~~~~--s~~~vya~GD~~~~~------~~~~A~~~g~~aa~~i~~~lg 377 (493)
T 1y56_A 335 VLDEYHR--IKDGIYVAGSAVSIK------PHYANYLEGKLVGAYILKEFG 377 (493)
T ss_dssp CCCTTSE--EETTEEECSTTTCCC------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccC--cCCCEEEEeccCCcc------CHHHHHHHHHHHHHHHHHHcC
Confidence 4788888 88999999 554332 345667778888888876553
No 41
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=23.87 E-value=70 Score=25.98 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=32.0
Q ss_pred ccCCCeEe------ccCCeEEec---CCCCC-CCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 66 VNYKLQVH------GLENVRIAD---ASVMP-YTVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 66 VD~~~~V~------Gv~nL~V~D---aSv~P-~~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
+|.++||. -++|||.+. ++++- .-+++|..+..+..|.++++.+.+.
T Consensus 512 id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~ 568 (572)
T 1d4d_A 512 IDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKF 568 (572)
T ss_dssp BCTTCEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHH
Confidence 56666653 378899984 34442 2246778888888999998887654
No 42
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=23.51 E-value=86 Score=24.86 Aligned_cols=47 Identities=19% Similarity=0.045 Sum_probs=31.5
Q ss_pred ccccCCCeEeccCCeEEe-cCCCCCCCCCCCh-----HHHHHHHHHHHHHHHHH
Q psy3537 64 SVVNYKLQVHGLENVRIA-DASVMPYTVNANI-----HATCVMIGEKCADLIKQ 111 (117)
Q Consensus 64 ~VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np-----~~t~~~~a~r~a~~i~~ 111 (117)
=+||+.++. ..+|+|.+ |+.-+|....+.+ ....+.-|..+|+.|..
T Consensus 285 i~vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 337 (565)
T 3ntd_A 285 IKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFG 337 (565)
T ss_dssp BCCCTTCBC-SSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EEECCCccc-CCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcC
Confidence 357777776 78999999 7776766554433 33455667777777753
No 43
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=22.41 E-value=99 Score=24.87 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=32.0
Q ss_pred ccCCCeEe-----ccCCeEEec---CCCCC-CCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537 66 VNYKLQVH-----GLENVRIAD---ASVMP-YTVNANIHATCVMIGEKCADLIKQY 112 (117)
Q Consensus 66 VD~~~~V~-----Gv~nL~V~D---aSv~P-~~~~~np~~t~~~~a~r~a~~i~~~ 112 (117)
+|.++||. -++|||.+. ++++- .-+++|..+..+..|.++++.+.+.
T Consensus 512 id~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~ 567 (571)
T 1y0p_A 512 IDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKY 567 (571)
T ss_dssp BCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCceEECCCCCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHH
Confidence 55556653 378999984 34443 2245777888888899988887654
No 44
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=21.45 E-value=75 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.022 Sum_probs=30.1
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.+|++++-..++|||.| |++=.. .--....+-+.++|+.|.+.+
T Consensus 498 ~~~~~~~~~~~~gly~~GegaG~a-----~gi~~Aa~~G~~~a~~i~~~~ 542 (549)
T 3nlc_A 498 KRGKDFQSVNLKGFYPAGEGAGYA-----GGILSAGIDGIKVAEAVARDI 542 (549)
T ss_dssp CCTTTTSCTTCBTEEECHHHHTSC-----CSHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCceECCcCCEEEccccCChh-----hHHHHHHHHHHHHHHHHHHHh
Confidence 47888887789999999 664222 223445667778888776655
No 45
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=20.83 E-value=1.3e+02 Score=20.86 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=25.9
Q ss_pred ccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537 74 GLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW 113 (117)
Q Consensus 74 Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~ 113 (117)
.+.|||++ |+. . .+....++.-|.++|+.|.+++
T Consensus 197 ~~p~iya~G~~a-~-----~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 197 RLEGLYAVGLCV-R-----EGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TSBSEEECGGGT-S-----CCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccceeeeecc-c-----CccHHHHHHHHHHHHHHHHhhc
Confidence 78999999 555 2 2255566888999999998775
No 46
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=20.58 E-value=1e+02 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=30.2
Q ss_pred cccCCCeEeccCCeEEe-cCCCCCCCCCC-----ChHHHHHHHHHHHHHHHHH
Q psy3537 65 VVNYKLQVHGLENVRIA-DASVMPYTVNA-----NIHATCVMIGEKCADLIKQ 111 (117)
Q Consensus 65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~-----np~~t~~~~a~r~a~~i~~ 111 (117)
+||+++|. ..+|+|.+ |+.-.|..+.. ........-|..+|+.|..
T Consensus 309 ~Vd~~~~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g 360 (490)
T 2bc0_A 309 LVNKRQET-SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACG 360 (490)
T ss_dssp CCCTTCBC-SSTTEEECGGGBCEEETTTTEEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EECCCccc-CCCCEEEeeeeEEeccccCCceeecccHHHHHHHHHHHHHHhcC
Confidence 67888887 78999999 77666544333 1234455666777777653
Done!