RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3537
         (117 letters)



>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 62.2 bits (150), Expect = 3e-13
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 54  TARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113
              M    +  VV+   +V+G++ +R+ D S+ P  +++++      +  K +D I + +
Sbjct: 322 LCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 381

Query: 114 EKS 116
              
Sbjct: 382 ASM 384


>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 57.7 bits (138), Expect = 1e-11
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 31  YDSDDYWKCTIKRRSSSYYHLSSTARMGDN--ILTSVVNYKLQVHGLENVRIADASVMPY 88
                                  + RMG +       VN   +V G +N+ +     +P 
Sbjct: 289 NSGFGQLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPT 348

Query: 89  TVNANIHATCVMIGEKCADLIKQYWEKS 116
              AN   T + +  K  + IKQ +  S
Sbjct: 349 AYGANPTLTAMSLAIKSCEYIKQNFTPS 376


>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
           flavocytochrome cellobiose dehydrogenase (CDH),
           FAD-binding domain {Fungus (Phanerochaete chrysosporium)
           [TaxId: 5306]}
          Length = 360

 Score = 57.0 bits (136), Expect = 2e-11
 Identities = 15/71 (21%), Positives = 31/71 (43%)

Query: 39  CTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATC 98
             +  ++           +G +  ++VV+  ++V G  N+ I DA ++P+    N   T 
Sbjct: 283 AALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTL 342

Query: 99  VMIGEKCADLI 109
           +   E+ A  I
Sbjct: 343 MSAAEQAAAKI 353


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 55.7 bits (133), Expect = 6e-11
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 62  LTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKS 116
           L  VV+   +V+G + +R+ D S+ P  V++++      +  K AD I   + KS
Sbjct: 336 LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKS 390


>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 196

 Score = 33.2 bits (75), Expect = 0.003
 Identities = 3/29 (10%), Positives = 9/29 (31%)

Query: 26  CDGFHYDSDDYWKCTIKRRSSSYYHLSST 54
            +     +   W   + +     +H  S+
Sbjct: 168 YNLVQNATLSQWSDYVLQNFRPNWHAVSS 196


>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
           [TaxId: 5061]}
          Length = 196

 Score = 32.0 bits (72), Expect = 0.010
 Identities = 5/29 (17%), Positives = 7/29 (24%)

Query: 26  CDGFHYDSDDYWKCTIKRRSSSYYHLSST 54
            +  +      W   I       YH   T
Sbjct: 168 DNLAYDADLSAWTEYIPYHFRPNYHGVGT 196


>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
           dulcis) [TaxId: 3755]}
          Length = 170

 Score = 29.3 bits (65), Expect = 0.080
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 30  HYDSDDYWKCTIKRRSSSYYHLS 52
               D  ++   +   +SY+H  
Sbjct: 146 DQTDDAAFETFCRESVASYWHYH 168


>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 41

 Score = 22.6 bits (48), Expect = 5.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 33 SDDYWKCT 40
          S+D W+CT
Sbjct: 1  SEDEWQCT 8


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.414 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,761
Number of extensions: 16838
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 10
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)