Query psy3538
Match_columns 89
No_of_seqs 144 out of 1279
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:14:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 3.8E-24 8.1E-29 154.0 7.2 59 31-89 2-60 (371)
2 KOG0713|consensus 99.9 9.9E-23 2.1E-27 144.3 7.1 61 29-89 12-72 (336)
3 KOG0721|consensus 99.9 1.1E-21 2.5E-26 132.1 8.3 86 3-88 69-154 (230)
4 PRK14288 chaperone protein Dna 99.8 8E-21 1.7E-25 137.4 6.8 57 32-88 2-58 (369)
5 cd06257 DnaJ DnaJ domain or J- 99.8 2.9E-20 6.3E-25 101.0 7.0 55 34-88 1-55 (55)
6 smart00271 DnaJ DnaJ molecular 99.8 9.6E-20 2.1E-24 100.6 7.2 57 33-89 1-58 (60)
7 PRK14296 chaperone protein Dna 99.8 5.1E-20 1.1E-24 133.3 6.8 57 32-89 3-59 (372)
8 PRK14286 chaperone protein Dna 99.8 8.6E-20 1.9E-24 132.1 7.2 58 32-89 3-60 (372)
9 PRK14279 chaperone protein Dna 99.8 9.6E-20 2.1E-24 132.6 7.1 58 32-89 8-65 (392)
10 PF00226 DnaJ: DnaJ domain; I 99.8 5.2E-19 1.1E-23 99.0 6.5 55 34-88 1-56 (64)
11 PRK14285 chaperone protein Dna 99.8 3.3E-19 7.1E-24 128.8 7.1 57 33-89 3-59 (365)
12 PRK14295 chaperone protein Dna 99.8 4.8E-19 1E-23 128.9 6.9 58 32-89 8-65 (389)
13 PRK14282 chaperone protein Dna 99.8 5.7E-19 1.2E-23 127.7 7.2 58 32-89 3-61 (369)
14 PRK14277 chaperone protein Dna 99.8 5.8E-19 1.3E-23 128.3 7.2 57 32-88 4-60 (386)
15 PRK14294 chaperone protein Dna 99.8 6.7E-19 1.4E-23 127.2 7.3 58 31-88 2-59 (366)
16 PRK14301 chaperone protein Dna 99.8 6.9E-19 1.5E-23 127.4 7.2 58 32-89 3-60 (373)
17 PRK14297 chaperone protein Dna 99.8 7.7E-19 1.7E-23 127.4 7.3 58 32-89 3-60 (380)
18 PRK14287 chaperone protein Dna 99.8 7.7E-19 1.7E-23 127.1 7.1 57 32-89 3-59 (371)
19 PRK10767 chaperone protein Dna 99.8 8.3E-19 1.8E-23 126.8 7.2 58 32-89 3-60 (371)
20 PRK14299 chaperone protein Dna 99.8 9.6E-19 2.1E-23 123.1 7.1 56 32-88 3-58 (291)
21 PRK14283 chaperone protein Dna 99.8 7E-19 1.5E-23 127.5 6.6 57 32-89 4-60 (378)
22 KOG0716|consensus 99.8 8.1E-19 1.8E-23 121.5 6.0 59 31-89 29-87 (279)
23 KOG0691|consensus 99.8 1.1E-18 2.5E-23 122.9 6.7 57 32-88 4-60 (296)
24 PTZ00037 DnaJ_C chaperone prot 99.8 8.9E-19 1.9E-23 128.6 6.3 55 30-88 25-79 (421)
25 PRK14284 chaperone protein Dna 99.8 1.4E-18 3E-23 126.5 7.0 56 33-88 1-56 (391)
26 PRK14276 chaperone protein Dna 99.8 1.2E-18 2.6E-23 126.4 6.5 56 32-88 3-58 (380)
27 PRK14281 chaperone protein Dna 99.8 1.4E-18 3.1E-23 126.7 6.9 56 33-88 3-58 (397)
28 PRK14298 chaperone protein Dna 99.8 1.6E-18 3.5E-23 125.7 6.7 57 32-89 4-60 (377)
29 KOG0712|consensus 99.8 1.3E-18 2.8E-23 124.2 6.0 54 32-88 3-56 (337)
30 PRK14278 chaperone protein Dna 99.8 1.7E-18 3.6E-23 125.6 6.6 56 33-89 3-58 (378)
31 PRK14291 chaperone protein Dna 99.8 1.9E-18 4.1E-23 125.5 6.6 56 32-88 2-57 (382)
32 PRK14280 chaperone protein Dna 99.7 2.3E-18 5E-23 124.8 6.5 56 32-88 3-58 (376)
33 KOG0717|consensus 99.7 2.5E-18 5.5E-23 125.9 6.4 61 29-89 4-65 (508)
34 PRK14289 chaperone protein Dna 99.7 5.8E-18 1.3E-22 123.0 7.2 58 32-89 4-61 (386)
35 PRK14290 chaperone protein Dna 99.7 7.2E-18 1.6E-22 121.8 6.9 57 33-89 3-60 (365)
36 PRK10266 curved DNA-binding pr 99.7 1.1E-17 2.5E-22 118.4 6.4 56 32-88 3-58 (306)
37 KOG0715|consensus 99.7 1.2E-17 2.5E-22 117.7 6.3 58 30-88 40-97 (288)
38 TIGR02349 DnaJ_bact chaperone 99.7 1.2E-17 2.6E-22 120.1 6.4 55 34-89 1-55 (354)
39 PRK14300 chaperone protein Dna 99.7 1.3E-17 2.9E-22 120.7 6.2 56 33-89 3-58 (372)
40 COG5407 SEC63 Preprotein trans 99.7 2.4E-17 5.2E-22 121.1 6.4 88 1-88 65-158 (610)
41 PRK14292 chaperone protein Dna 99.7 3.5E-17 7.5E-22 118.4 6.9 55 33-88 2-56 (371)
42 PRK14293 chaperone protein Dna 99.7 3.3E-17 7.1E-22 118.7 6.3 55 33-88 3-57 (374)
43 PTZ00100 DnaJ chaperone protei 99.7 2.3E-16 5.1E-21 98.0 8.7 56 28-87 60-115 (116)
44 PHA03102 Small T antigen; Revi 99.7 6.3E-17 1.4E-21 104.9 5.2 55 31-89 3-59 (153)
45 KOG0719|consensus 99.7 1.2E-16 2.7E-21 109.0 6.0 60 29-88 10-71 (264)
46 COG2214 CbpA DnaJ-class molecu 99.7 3.3E-16 7.2E-21 103.1 6.8 58 31-88 4-62 (237)
47 PTZ00341 Ring-infected erythro 99.6 2.8E-16 6E-21 123.3 6.9 58 31-89 571-628 (1136)
48 KOG0718|consensus 99.6 6.3E-16 1.4E-20 113.7 6.3 60 30-89 6-68 (546)
49 PRK09430 djlA Dna-J like membr 99.6 9.5E-16 2.1E-20 107.0 6.7 59 30-88 197-262 (267)
50 PRK05014 hscB co-chaperone Hsc 99.6 3.8E-15 8.3E-20 98.2 6.7 57 33-89 1-64 (171)
51 KOG0722|consensus 99.6 4.8E-15 1E-19 102.7 5.7 59 29-88 29-87 (329)
52 TIGR03835 termin_org_DnaJ term 99.6 7.7E-15 1.7E-19 113.2 6.9 55 33-88 2-56 (871)
53 PRK03578 hscB co-chaperone Hsc 99.6 1.4E-14 3.1E-19 95.9 7.0 59 31-89 4-69 (176)
54 PRK01356 hscB co-chaperone Hsc 99.5 1.6E-14 3.6E-19 94.8 6.9 57 33-89 2-63 (166)
55 PRK00294 hscB co-chaperone Hsc 99.5 2.2E-14 4.8E-19 94.8 6.8 59 31-89 2-67 (173)
56 PHA02624 large T antigen; Prov 99.5 2.3E-14 5.1E-19 108.9 5.2 57 29-89 7-65 (647)
57 KOG0720|consensus 99.4 1.3E-13 2.7E-18 101.4 5.4 57 31-88 233-289 (490)
58 KOG1150|consensus 99.4 5E-13 1.1E-17 89.9 5.8 61 28-88 48-109 (250)
59 KOG0624|consensus 99.4 5.4E-13 1.2E-17 96.4 5.5 62 28-89 389-453 (504)
60 KOG0550|consensus 99.3 1.3E-12 2.8E-17 95.6 4.5 61 29-89 369-430 (486)
61 PRK01773 hscB co-chaperone Hsc 99.3 1.5E-11 3.2E-16 81.3 6.8 57 33-89 2-65 (173)
62 KOG0714|consensus 99.3 5.2E-12 1.1E-16 86.6 4.5 57 32-88 2-59 (306)
63 TIGR00714 hscB Fe-S protein as 99.0 6.3E-10 1.4E-14 72.5 6.3 46 44-89 2-52 (157)
64 KOG0568|consensus 99.0 4.6E-10 9.9E-15 77.5 5.1 59 28-87 42-101 (342)
65 KOG1789|consensus 98.9 2.4E-09 5.2E-14 85.9 6.0 57 28-87 1276-1336(2235)
66 KOG0723|consensus 98.9 6.7E-09 1.4E-13 63.5 6.0 61 24-88 47-107 (112)
67 COG5269 ZUO1 Ribosome-associat 98.8 7.1E-09 1.5E-13 72.9 4.1 58 31-88 41-103 (379)
68 COG1076 DjlA DnaJ-domain-conta 98.0 5.7E-06 1.2E-10 54.6 2.9 55 32-86 112-173 (174)
69 KOG0431|consensus 97.7 5.2E-05 1.1E-09 56.8 4.7 51 35-85 390-447 (453)
70 PF03656 Pam16: Pam16; InterP 97.5 0.00034 7.4E-09 44.3 5.0 40 29-68 54-93 (127)
71 KOG3192|consensus 97.3 0.00061 1.3E-08 44.5 4.6 59 30-88 5-70 (168)
72 COG1076 DjlA DnaJ-domain-conta 96.3 0.0029 6.3E-08 41.7 2.3 55 34-88 2-63 (174)
73 PF13446 RPT: A repeated domai 95.2 0.068 1.5E-06 29.3 4.5 29 31-59 3-31 (62)
74 PF11833 DUF3353: Protein of u 94.5 0.15 3.2E-06 34.4 5.6 37 42-86 1-37 (194)
75 PF14687 DUF4460: Domain of un 92.0 0.73 1.6E-05 28.5 5.4 44 44-87 5-52 (112)
76 KOG0724|consensus 89.8 0.56 1.2E-05 33.6 3.9 44 45-88 4-51 (335)
77 KOG3442|consensus 85.1 6.1 0.00013 25.1 6.0 39 30-68 56-94 (132)
78 COG5552 Uncharacterized conser 80.8 8.8 0.00019 22.3 5.5 35 34-68 4-38 (88)
79 PF07709 SRR: Seven Residue Re 78.5 1.3 2.8E-05 17.3 0.9 13 75-87 2-14 (14)
80 COG2879 Uncharacterized small 65.8 15 0.00032 20.6 3.5 29 52-82 26-54 (65)
81 PF12434 Malate_DH: Malate deh 59.0 14 0.0003 17.2 2.2 17 47-63 10-26 (28)
82 PF15178 TOM_sub5: Mitochondri 55.0 25 0.00054 18.5 3.0 24 36-59 2-25 (51)
83 PF10041 DUF2277: Uncharacteri 54.2 42 0.0009 19.5 6.6 34 35-68 5-38 (78)
84 PF08447 PAS_3: PAS fold; Int 51.9 4.9 0.00011 22.2 0.0 30 32-65 5-35 (91)
85 KOG3960|consensus 47.4 17 0.00037 25.8 2.1 16 73-88 127-142 (284)
86 KOG2320|consensus 42.8 48 0.001 26.4 4.1 36 42-86 398-433 (651)
87 PF00076 RRM_1: RNA recognitio 41.9 22 0.00048 18.4 1.7 22 39-60 4-25 (70)
88 PF04282 DUF438: Family of unk 40.8 21 0.00046 20.3 1.5 26 39-64 7-32 (71)
89 COG0089 RplW Ribosomal protein 40.7 27 0.00059 21.0 2.0 22 38-59 25-46 (94)
90 PTZ00043 cytochrome c oxidase 40.2 68 0.0015 22.6 4.2 48 37-87 84-132 (268)
91 PRK13798 putative OHCU decarbo 39.3 77 0.0017 20.7 4.2 28 57-84 66-109 (166)
92 TIGR03180 UraD_2 OHCU decarbox 37.9 85 0.0018 20.4 4.2 15 70-84 90-104 (158)
93 PF03820 Mtc: Tricarboxylate c 37.3 42 0.0009 24.3 2.9 39 28-66 25-69 (308)
94 PF11590 DNAPolymera_Pol: DNA 36.6 58 0.0012 16.5 2.5 17 71-87 25-41 (41)
95 cd01780 PLC_epsilon_RA Ubiquit 35.3 47 0.001 19.9 2.5 37 30-66 8-44 (93)
96 PF09628 YvfG: YvfG protein; 35.1 84 0.0018 17.5 3.5 40 48-87 27-66 (68)
97 CHL00030 rpl23 ribosomal prote 34.2 40 0.00088 20.1 2.1 21 38-58 23-43 (93)
98 TIGR03759 conj_TIGR03759 integ 32.7 1.4E+02 0.003 20.5 4.7 39 17-59 23-61 (200)
99 COG3195 Uncharacterized protei 32.6 53 0.0011 21.9 2.6 43 42-84 41-117 (176)
100 PRK00810 nifW nitrogenase stab 32.3 79 0.0017 19.6 3.2 33 28-60 14-51 (113)
101 COG0547 TrpD Anthranilate phos 32.0 30 0.00066 25.4 1.5 41 24-64 114-160 (338)
102 TIGR03164 UHCUDC OHCU decarbox 31.4 1.2E+02 0.0026 19.6 4.2 14 71-84 91-104 (157)
103 KOG0718|consensus 31.4 47 0.001 25.8 2.5 33 28-60 66-109 (546)
104 CHL00185 ycf59 magnesium-proto 30.6 2E+02 0.0044 21.3 5.5 57 28-84 245-302 (351)
105 smart00872 Alpha-mann_mid Alph 30.1 1.1E+02 0.0023 17.1 4.0 25 45-69 42-66 (79)
106 PF06767 Sif: Sif protein; In 29.4 1.2E+02 0.0026 22.4 4.1 31 51-81 44-74 (337)
107 TIGR03636 L23_arch archaeal ri 28.6 59 0.0013 18.6 2.1 21 38-58 18-38 (77)
108 PF03206 NifW: Nitrogen fixati 28.6 77 0.0017 19.3 2.7 58 28-85 10-73 (105)
109 smart00362 RRM_2 RNA recogniti 28.5 63 0.0014 16.1 2.1 21 38-58 4-24 (72)
110 PF08673 RsbU_N: Phosphoserine 27.9 1.3E+02 0.0027 17.2 3.8 43 42-84 32-74 (77)
111 smart00360 RRM RNA recognition 27.7 68 0.0015 15.8 2.1 20 39-58 2-21 (71)
112 PF13337 Lon_2: Putative ATP-d 27.3 2.3E+02 0.005 21.9 5.5 36 36-71 385-423 (457)
113 PF04328 DUF466: Protein of un 26.8 1.2E+02 0.0026 16.7 4.1 27 52-80 26-52 (65)
114 PF00591 Glycos_transf_3: Glyc 26.6 1.3E+02 0.0029 20.5 3.9 34 24-57 40-73 (252)
115 KOG3242|consensus 26.1 54 0.0012 22.3 1.8 33 55-87 158-193 (208)
116 PRK13654 magnesium-protoporphy 26.0 2.7E+02 0.0059 20.7 5.5 39 28-66 249-287 (355)
117 PRK05738 rplW 50S ribosomal pr 25.9 68 0.0015 18.9 2.1 21 38-58 24-44 (92)
118 PF09349 OHCU_decarbox: OHCU d 25.9 1.7E+02 0.0036 18.8 4.1 15 70-84 93-107 (159)
119 PF04967 HTH_10: HTH DNA bindi 25.4 30 0.00065 18.4 0.4 28 31-58 25-52 (53)
120 cd01047 ACSF Aerobic Cyclase S 25.2 2.8E+02 0.0061 20.4 5.7 39 28-66 229-267 (323)
121 KOG3767|consensus 24.6 93 0.002 22.9 2.9 28 40-67 61-88 (328)
122 TIGR00824 EIIA-man PTS system, 24.5 1.4E+02 0.0029 18.1 3.3 33 33-65 27-59 (116)
123 cd00590 RRM RRM (RNA recogniti 24.2 83 0.0018 15.7 2.1 20 38-57 4-23 (74)
124 PF10475 DUF2450: Protein of u 24.0 1.6E+02 0.0036 20.6 4.1 32 47-88 181-212 (291)
125 PF04796 RepA_C: Plasmid encod 23.6 2.1E+02 0.0046 18.7 4.2 54 7-60 7-64 (161)
126 TIGR02029 AcsF magnesium-proto 23.5 3.1E+02 0.0067 20.3 5.6 39 28-66 239-277 (337)
127 PF14893 PNMA: PNMA 23.4 72 0.0016 23.4 2.2 23 35-57 20-42 (331)
128 KOG1647|consensus 23.3 81 0.0018 22.1 2.3 33 28-60 111-144 (255)
129 PF14706 Tnp_DNA_bind: Transpo 23.2 1.4E+02 0.003 16.2 2.9 38 49-88 16-55 (58)
130 cd00084 HMG-box High Mobility 22.9 1.2E+02 0.0027 15.4 2.6 32 51-87 12-43 (66)
131 PRK10613 hypothetical protein; 22.8 34 0.00073 19.6 0.3 11 46-56 64-74 (74)
132 cd01390 HMGB-UBF_HMG-box HMGB- 22.6 1.2E+02 0.0027 15.6 2.6 29 54-87 15-43 (66)
133 PF00427 PBS_linker_poly: Phyc 22.2 83 0.0018 20.0 2.1 18 48-65 12-29 (131)
134 PF10769 DUF2594: Protein of u 21.9 36 0.00078 19.5 0.3 11 46-56 64-74 (74)
135 cd01388 SOX-TCF_HMG-box SOX-TC 21.7 1.4E+02 0.003 16.2 2.8 31 52-87 14-44 (72)
136 PRK14548 50S ribosomal protein 21.6 94 0.002 18.1 2.1 21 38-58 25-45 (84)
137 smart00427 H2B Histone H2B. 21.5 1.9E+02 0.0042 17.1 4.2 14 55-68 8-21 (89)
138 PF11608 Limkain-b1: Limkain b 21.5 1.2E+02 0.0025 18.2 2.4 26 37-62 6-31 (90)
139 PLN02641 anthranilate phosphor 21.4 71 0.0015 23.4 1.8 33 25-57 113-145 (343)
140 PRK09498 sifA secreted effecto 20.8 2.4E+02 0.0053 20.7 4.3 30 52-81 45-74 (336)
141 PF13373 DUF2407_C: DUF2407 C- 20.7 2.4E+02 0.0052 18.0 4.1 37 47-83 16-54 (140)
142 PRK07394 hypothetical protein; 20.5 74 0.0016 23.2 1.8 25 32-56 131-156 (342)
143 PF08989 DUF1896: Domain of un 20.5 2.4E+02 0.0052 18.3 3.9 29 55-83 16-44 (144)
144 PF04719 TAFII28: hTAFII28-lik 20.4 93 0.002 18.4 1.9 14 44-57 77-90 (90)
145 COG4930 Predicted ATP-dependen 20.3 3.4E+02 0.0075 21.3 5.2 26 46-71 415-440 (683)
146 PF00276 Ribosomal_L23: Riboso 20.3 1E+02 0.0023 18.0 2.1 22 37-58 23-44 (91)
147 PF14259 RRM_6: RNA recognitio 20.1 66 0.0014 16.8 1.2 18 40-57 5-22 (70)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.8e-24 Score=154.01 Aligned_cols=59 Identities=49% Similarity=0.832 Sum_probs=56.3
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
...|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|||.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~ 60 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 46899999999999999999999999999999999997799999999999999999983
No 2
>KOG0713|consensus
Probab=99.88 E-value=9.9e-23 Score=144.33 Aligned_cols=61 Identities=44% Similarity=0.667 Sum_probs=58.2
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
....+|+|+||||+.+|+..|||+|||+||+++|||||+++|.|.+.|+.|+.||++|||.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDp 72 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDP 72 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCH
Confidence 3467999999999999999999999999999999999999999999999999999999984
No 3
>KOG0721|consensus
Probab=99.86 E-value=1.1e-21 Score=132.14 Aligned_cols=86 Identities=30% Similarity=0.478 Sum_probs=80.0
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhhcccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHH
Q psy3538 3 PFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAA 82 (89)
Q Consensus 3 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~A 82 (89)
..|..+++++|+++.+...............|||+||||+++++.+|||++||+|++++||||+++.++.++.|..|++|
T Consensus 69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA 148 (230)
T KOG0721|consen 69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA 148 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence 45788999999999999988888888888999999999999999999999999999999999998767789999999999
Q ss_pred HHHhhC
Q psy3538 83 YEVLGE 88 (89)
Q Consensus 83 y~~L~d 88 (89)
|+.|+|
T Consensus 149 Y~aLTD 154 (230)
T KOG0721|consen 149 YQALTD 154 (230)
T ss_pred HHHhcc
Confidence 999997
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8e-21 Score=137.35 Aligned_cols=57 Identities=42% Similarity=0.752 Sum_probs=54.3
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|||+||||+++||.+|||+|||+|+++||||+++++++++++|++|++||++|+|
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd 58 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSD 58 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999999998667899999999999999998
No 5
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.83 E-value=2.9e-20 Score=101.01 Aligned_cols=55 Identities=47% Similarity=0.802 Sum_probs=52.3
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
|||++|||+++++.++||++|+++++++|||++++.+.+.+.|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999998657789999999999999987
No 6
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.81 E-value=9.6e-20 Score=100.60 Aligned_cols=57 Identities=49% Similarity=0.799 Sum_probs=53.4
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC-cHHHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG-SEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|+|+||||+++++.++||++|+++++.+|||++++ .+.+.+.|+.|++||++|+|.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999999999999999999999999986 578999999999999999973
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.1e-20 Score=133.32 Aligned_cols=57 Identities=42% Similarity=0.621 Sum_probs=53.7
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~ 59 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDK 59 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCH
Confidence 4799999999999999999999999999999999975 77999999999999999983
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.6e-20 Score=132.10 Aligned_cols=58 Identities=45% Similarity=0.763 Sum_probs=54.8
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.+|||+|||+++++||||+++++++++++|++|++||++|+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 4799999999999999999999999999999999987678999999999999999983
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.6e-20 Score=132.62 Aligned_cols=58 Identities=36% Similarity=0.672 Sum_probs=55.2
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.+|||+|||+++++||||++++++.++++|++|++||++|+|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~ 65 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDP 65 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcch
Confidence 4799999999999999999999999999999999987788999999999999999983
No 10
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.78 E-value=5.2e-19 Score=99.03 Aligned_cols=55 Identities=51% Similarity=0.815 Sum_probs=51.7
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH-HHHHHHHHHHHHHHHhhC
Q psy3538 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE-AAAKKFREITAAYEVLGE 88 (89)
Q Consensus 34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d 88 (89)
|+|+||||+++++.++||++|+++++++|||++++.. .+.+.|..|++||++|+|
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~ 56 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSD 56 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999987754 689999999999999987
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.3e-19 Score=128.82 Aligned_cols=57 Identities=44% Similarity=0.708 Sum_probs=54.5
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||++|||+++|+.+|||+|||+++++||||++++++.++++|++|++||++|+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD 59 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 699999999999999999999999999999999987788999999999999999983
No 12
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4.8e-19 Score=128.87 Aligned_cols=58 Identities=45% Similarity=0.796 Sum_probs=54.8
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||++|+|.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence 4799999999999999999999999999999999987678999999999999999983
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=5.7e-19 Score=127.67 Aligned_cols=58 Identities=48% Similarity=0.749 Sum_probs=54.0
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.+|||+|||+|+++||||+++++ +.++++|++|++||++|+|.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~ 61 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcCh
Confidence 47999999999999999999999999999999999754 66899999999999999983
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=5.8e-19 Score=128.27 Aligned_cols=57 Identities=51% Similarity=0.846 Sum_probs=54.4
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|||+||||+++++.+|||+|||+++++||||++++++.++++|++|++||++|+|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d 60 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCC
Confidence 369999999999999999999999999999999998777899999999999999998
No 15
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.7e-19 Score=127.21 Aligned_cols=58 Identities=45% Similarity=0.767 Sum_probs=54.9
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...|||+||||+++|+.+|||+|||+++++||||++++++.+++.|++|++||++|+|
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d 59 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSD 59 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhcc
Confidence 3579999999999999999999999999999999998777899999999999999998
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.9e-19 Score=127.45 Aligned_cols=58 Identities=41% Similarity=0.733 Sum_probs=54.9
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++++.++||+|||++++++|||+++++++++++|++|++||++|+|.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch
Confidence 4799999999999999999999999999999999987778999999999999999983
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.7e-19 Score=127.40 Aligned_cols=58 Identities=43% Similarity=0.755 Sum_probs=54.8
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.++||+|||+++++||||++++++.++++|++|++||++|+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 4699999999999999999999999999999999987778999999999999999983
No 18
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.7e-19 Score=127.12 Aligned_cols=57 Identities=40% Similarity=0.725 Sum_probs=53.5
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||++|||+++|+.+|||+|||+++++||||++++ ++++++|++|++||++|+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~ 59 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDP 59 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcH
Confidence 4699999999999999999999999999999999975 77899999999999999983
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=8.3e-19 Score=126.83 Aligned_cols=58 Identities=47% Similarity=0.800 Sum_probs=54.6
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.++||+|||++++++|||++++++.++++|++|++||++|+|.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcch
Confidence 4799999999999999999999999999999999987677999999999999999973
No 20
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=9.6e-19 Score=123.15 Aligned_cols=56 Identities=45% Similarity=0.758 Sum_probs=53.2
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|||+||||+++|+.+|||+|||++++++|||++++ +.++++|++|++||++|+|
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d 58 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSD 58 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999975 7789999999999999997
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7e-19 Score=127.54 Aligned_cols=57 Identities=44% Similarity=0.740 Sum_probs=54.1
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||++|||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+|+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~ 60 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDD 60 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchh
Confidence 5799999999999999999999999999999999986 77999999999999999984
No 22
>KOG0716|consensus
Probab=99.76 E-value=8.1e-19 Score=121.52 Aligned_cols=59 Identities=39% Similarity=0.674 Sum_probs=56.2
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
...|.|+|||++++++.++||++||++++++|||+++++|++.++|++||+||++|+|.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP 87 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh
Confidence 35789999999999999999999999999999999999999999999999999999984
No 23
>KOG0691|consensus
Probab=99.76 E-value=1.1e-18 Score=122.93 Aligned_cols=57 Identities=46% Similarity=0.796 Sum_probs=55.8
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|||+||||+.+++..+|+++||..++++||||||++|.+.+.|+.|.+||++|+|
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D 60 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSD 60 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999999999999999999999999998
No 24
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.76 E-value=8.9e-19 Score=128.58 Aligned_cols=55 Identities=38% Similarity=0.634 Sum_probs=51.2
Q ss_pred CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
....|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+|
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD 79 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSD 79 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhcc
Confidence 346899999999999999999999999999999999864 5899999999999998
No 25
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.4e-18 Score=126.51 Aligned_cols=56 Identities=46% Similarity=0.843 Sum_probs=53.7
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.|||+||||+++|+.++||+|||+++++||||++++++.++++|++|++||++|+|
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d 56 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD 56 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999999999999778899999999999999998
No 26
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.2e-18 Score=126.44 Aligned_cols=56 Identities=46% Similarity=0.813 Sum_probs=53.2
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|||+||||+++|+.+|||+|||+++++||||++++ +.++++|++|++||++|+|
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d 58 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSD 58 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999986 6789999999999999998
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.4e-18 Score=126.66 Aligned_cols=56 Identities=43% Similarity=0.752 Sum_probs=53.8
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.|||+||||+++++.++||+|||++++++|||++++++.++++|++|++||++|+|
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d 58 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSN 58 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999998777889999999999999998
No 28
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.6e-18 Score=125.71 Aligned_cols=57 Identities=42% Similarity=0.730 Sum_probs=53.6
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||+||||+++|+.+|||+|||+++++||||++++ +.++++|++|++||++|+|.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~ 60 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDA 60 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcch
Confidence 4699999999999999999999999999999999975 67899999999999999983
No 29
>KOG0712|consensus
Probab=99.75 E-value=1.3e-18 Score=124.18 Aligned_cols=54 Identities=46% Similarity=0.790 Sum_probs=52.1
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...+|+||||+++|+.+|||+|||+|+++||||||++ +.++|++|..||++|||
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSD 56 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999998 89999999999999998
No 30
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.7e-18 Score=125.63 Aligned_cols=56 Identities=45% Similarity=0.719 Sum_probs=53.2
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||+||||+++|+.++||+|||+++++||||++++ ++++++|++|++||++|+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~ 58 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDP 58 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchh
Confidence 699999999999999999999999999999999985 77999999999999999973
No 31
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.9e-18 Score=125.47 Aligned_cols=56 Identities=52% Similarity=0.821 Sum_probs=53.3
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|||+||||+++|+.++||+|||+++++||||++++ +.++++|++|++||++|+|
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd 57 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSD 57 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999999986 6789999999999999998
No 32
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.3e-18 Score=124.82 Aligned_cols=56 Identities=54% Similarity=0.853 Sum_probs=53.1
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|||+||||+++|+.++||+|||+++++||||++++ +.++++|++|++||++|+|
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d 58 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSD 58 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999999999999999999875 6789999999999999998
No 33
>KOG0717|consensus
Probab=99.75 E-value=2.5e-18 Score=125.93 Aligned_cols=61 Identities=44% Similarity=0.657 Sum_probs=56.2
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.....+||+||||..+++..+||++||+++++||||++|+. +++.+.|+.|+.||+||||.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp 65 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDP 65 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcCh
Confidence 34567999999999999999999999999999999998765 78999999999999999984
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=5.8e-18 Score=123.00 Aligned_cols=58 Identities=45% Similarity=0.721 Sum_probs=55.1
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|||++|||+++++.+|||+|||++++++|||+++++++++++|++|++||++|+|.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~ 61 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 4799999999999999999999999999999999987788999999999999999983
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=7.2e-18 Score=121.82 Aligned_cols=57 Identities=42% Similarity=0.730 Sum_probs=53.5
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH-HHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE-AAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||+||||+++|+.+|||+|||+|++++|||++++++ .++++|+.|++||++|+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh
Confidence 69999999999999999999999999999999998653 7999999999999999983
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.72 E-value=1.1e-17 Score=118.36 Aligned_cols=56 Identities=36% Similarity=0.659 Sum_probs=52.8
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..|+|++|||+++++.++||+|||++++++|||++++ +.++++|++|++||++|+|
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~ 58 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSD 58 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhh
Confidence 3699999999999999999999999999999999875 6789999999999999997
No 37
>KOG0715|consensus
Probab=99.72 E-value=1.2e-17 Score=117.72 Aligned_cols=58 Identities=48% Similarity=0.797 Sum_probs=54.1
Q ss_pred CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
....|||+||||+++++..|||+||++|+++||||.+.+ +++.++|++|.+|||+|+|
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd 97 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSD 97 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcC
Confidence 333499999999999999999999999999999999998 5899999999999999997
No 38
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.72 E-value=1.2e-17 Score=120.10 Aligned_cols=55 Identities=49% Similarity=0.851 Sum_probs=51.7
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
|||+||||+++++.++||+|||++++++|||++++ +.++++|++|++||++|+|.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhCh
Confidence 69999999999999999999999999999999974 66899999999999999983
No 39
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=120.69 Aligned_cols=56 Identities=45% Similarity=0.771 Sum_probs=52.5
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||+||||+++++.+|||+|||+++++||||++++ +.++++|++|++||++|+|.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~ 58 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDE 58 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhH
Confidence 699999999999999999999999999999999874 66889999999999999973
No 40
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.70 E-value=2.4e-17 Score=121.10 Aligned_cols=88 Identities=25% Similarity=0.462 Sum_probs=79.8
Q ss_pred CCCchhHHHHHHHHHHHHhhhhhhhhc-ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC-----cHHHHH
Q psy3538 1 MYPFRNNVCNLTWAVVKYHRFSTSALY-SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG-----SEAAAK 74 (89)
Q Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-----~~~~~~ 74 (89)
+|..|..+.++||.++++..+..+.+. ......|+|+|||++.+++.++||++||+|+.++||||.+. .++.++
T Consensus 65 If~lR~If~ivgWl~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee 144 (610)
T COG5407 65 IFKLRKIFTIVGWLVISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEE 144 (610)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHH
Confidence 356789999999999999998888866 66778999999999999999999999999999999999876 267999
Q ss_pred HHHHHHHHHHHhhC
Q psy3538 75 KFREITAAYEVLGE 88 (89)
Q Consensus 75 ~f~~i~~Ay~~L~d 88 (89)
.+++|++||..|+|
T Consensus 145 ~y~~ItkAY~~lTd 158 (610)
T COG5407 145 KYKTITKAYGLLTD 158 (610)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999999987
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.5e-17 Score=118.41 Aligned_cols=55 Identities=45% Similarity=0.799 Sum_probs=52.5
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.|||+||||+++++.++||+|||++++++|||++++ +.++++|+.|++||++|+|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d 56 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSD 56 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999985 7789999999999999998
No 42
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.3e-17 Score=118.73 Aligned_cols=55 Identities=45% Similarity=0.821 Sum_probs=52.4
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.|||+||||+++++.++||+|||++++++|||++++ +.++++|+.|++||++|+|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~ 57 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSD 57 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999875 6689999999999999997
No 43
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=98.00 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=50.4
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
...+..++|+||||+++++.++||++||++++++|||++++ .+.|++|++||++|.
T Consensus 60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 45556899999999999999999999999999999999754 578899999999985
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.68 E-value=6.3e-17 Score=104.92 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=50.2
Q ss_pred cccChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
+...+|+||||++++ +.++||+|||++++++|||++++ ++.|+.|++||++|+|.
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRES 59 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhH
Confidence 346789999999999 99999999999999999999875 57999999999999873
No 45
>KOG0719|consensus
Probab=99.67 E-value=1.2e-16 Score=109.00 Aligned_cols=60 Identities=37% Similarity=0.612 Sum_probs=54.6
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCC--CcHHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNK--GSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~--~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.....|+|+||||..+++..+|++||+++++++|||+++ +..++.+.|+.|+.||+||+|
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD 71 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD 71 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH
Confidence 345569999999999999999999999999999999995 346799999999999999987
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.3e-16 Score=103.10 Aligned_cols=58 Identities=43% Similarity=0.761 Sum_probs=54.7
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHH-HHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA-AAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~f~~i~~Ay~~L~d 88 (89)
...++|+||||+++++..+|+++||++++++|||++++++. +.+.|+.|++||++|+|
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd 62 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD 62 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhC
Confidence 45789999999999999999999999999999999998775 99999999999999997
No 47
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.65 E-value=2.8e-16 Score=123.32 Aligned_cols=58 Identities=34% Similarity=0.694 Sum_probs=54.2
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
...+||+||||+++|+..+||+|||++++++|||+++++ .+.++|+.|.+||++|||.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp 628 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDI 628 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCH
Confidence 457999999999999999999999999999999999874 6889999999999999983
No 48
>KOG0718|consensus
Probab=99.62 E-value=6.3e-16 Score=113.73 Aligned_cols=60 Identities=43% Similarity=0.730 Sum_probs=54.6
Q ss_pred CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc---HHHHHHHHHHHHHHHHhhCC
Q psy3538 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..+.|+|.+|||+++|+.+||++|||++++.|||||..++ +.|++.|+.|.+|||+|+|.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp 68 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDP 68 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcCh
Confidence 4456999999999999999999999999999999998753 45999999999999999994
No 49
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.62 E-value=9.5e-16 Score=107.05 Aligned_cols=59 Identities=36% Similarity=0.471 Sum_probs=52.5
Q ss_pred CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC---c----HHHHHHHHHHHHHHHHhhC
Q psy3538 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG---S----EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~----~~~~~~f~~i~~Ay~~L~d 88 (89)
....++|++|||++++|.++||++||++++++|||+..+ + +.++++|+.|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999643 1 4589999999999999974
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.59 E-value=3.8e-15 Score=98.19 Aligned_cols=57 Identities=21% Similarity=0.427 Sum_probs=49.8
Q ss_pred cChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||++|||+++ ++..+|+++||++++++|||+..+.+ .+.+.+..|++||++|+|+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 489999999995 68899999999999999999976532 2677899999999999985
No 51
>KOG0722|consensus
Probab=99.57 E-value=4.8e-15 Score=102.68 Aligned_cols=59 Identities=36% Similarity=0.569 Sum_probs=54.3
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
-...+|+|+||||+++++..+|.+|||+|++++|||++.+ +++.+.|..|.+||++|.|
T Consensus 29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd 87 (329)
T KOG0722|consen 29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKD 87 (329)
T ss_pred cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccc
Confidence 3567899999999999999999999999999999999998 5566999999999999986
No 52
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.56 E-value=7.7e-15 Score=113.22 Aligned_cols=55 Identities=42% Similarity=0.706 Sum_probs=52.5
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.|||+||||+++++.++||++||++++++|||++++ +.+.++|+.|++||++|+|
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSD 56 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSN 56 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999999999887 7788999999999999997
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=1.4e-14 Score=95.86 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=50.1
Q ss_pred cccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcHH-----HHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSEA-----AAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~ 89 (89)
...|||++|||+++ ++..+|+++|+++++++|||+.+..+. +.+.+..||+||++|+|.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 45799999999985 689999999999999999999875433 445568999999999974
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=1.6e-14 Score=94.80 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=49.3
Q ss_pred cChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||++|||+++ ++..+|+++||++++++|||+..+.. .+.+.+..|++||++|+|.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp 63 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDA 63 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 589999999986 78999999999999999999987532 2455688999999999973
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=2.2e-14 Score=94.75 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=51.7
Q ss_pred cccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~ 89 (89)
...|||++||++++ .+..+|+++||++++++|||+..+.+ .+.+.+..||+||++|+|.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p 67 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSP 67 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 46899999999996 67899999999999999999986542 3677899999999999973
No 56
>PHA02624 large T antigen; Provisional
Probab=99.50 E-value=2.3e-14 Score=108.86 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=51.8
Q ss_pred cCcccChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 29 SQAKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..+..++|++|||++++ +.++||++||++++++|||++++ ++.|+.|++||++|+|+
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcH
Confidence 34467999999999999 99999999999999999999765 68999999999999974
No 57
>KOG0720|consensus
Probab=99.45 E-value=1.3e-13 Score=101.41 Aligned_cols=57 Identities=32% Similarity=0.583 Sum_probs=54.5
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...|+|.+|||+.+++.++||+.||+++...|||||-. +.++|.|+.|+.||++|+|
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~ 289 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGD 289 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999984 8999999999999999987
No 58
>KOG1150|consensus
Probab=99.41 E-value=5e-13 Score=89.91 Aligned_cols=61 Identities=39% Similarity=0.585 Sum_probs=57.1
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d 88 (89)
++...-|+|+||.|.++.+.++||+.||+++...|||+|+++ +.+...|-.+.+||..|-|
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n 109 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLEN 109 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhC
Confidence 556788999999999999999999999999999999999998 7899999999999999865
No 59
>KOG0624|consensus
Probab=99.39 E-value=5.4e-13 Score=96.41 Aligned_cols=62 Identities=39% Similarity=0.594 Sum_probs=56.7
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhCC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d~ 89 (89)
......|||.||||.++++..||-+|||+++.+||||...+.+ .++.+|..|..|-++|+|.
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~ 453 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP 453 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence 4567789999999999999999999999999999999998853 4999999999999999983
No 60
>KOG0550|consensus
Probab=99.33 E-value=1.3e-12 Score=95.57 Aligned_cols=61 Identities=36% Similarity=0.666 Sum_probs=57.2
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.....+||.|||++.+++..+||++||++++.+|||++.++ .+++.+|+++-+||.+|+|+
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH
Confidence 45578999999999999999999999999999999999887 78999999999999999986
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=1.5e-11 Score=81.34 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=49.8
Q ss_pred cChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||++||+++. .+..+++++|+++.+++|||+..+. ..+.+....||+||++|+|.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdP 65 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDP 65 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 589999999985 8999999999999999999997654 23566789999999999984
No 62
>KOG0714|consensus
Probab=99.27 E-value=5.2e-12 Score=86.55 Aligned_cols=57 Identities=44% Similarity=0.764 Sum_probs=51.2
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d 88 (89)
..|+|.+|||.++++..+|++||+++++++|||+++.. ..++.+|.+|.+||++|+|
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~ 59 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSD 59 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCC
Confidence 47899999999999999999999999999999998774 3466689999999999987
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.05 E-value=6.3e-10 Score=72.51 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhCC
Q psy3538 44 EATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 44 ~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..+..+|+++|+++++++|||+.++. ..+.+.+..|++||++|+|.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCCh
Confidence 35789999999999999999996542 23778999999999999984
No 64
>KOG0568|consensus
Probab=99.02 E-value=4.6e-10 Score=77.48 Aligned_cols=59 Identities=31% Similarity=0.495 Sum_probs=52.3
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHH-Hhh
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYE-VLG 87 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~-~L~ 87 (89)
+......+|.+|||..+++.++++.+|..|++++|||.+.. +...++|++|.+||. +|+
T Consensus 42 ske~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 42 SKEKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred hHHHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999875 667899999999996 665
No 65
>KOG1789|consensus
Probab=98.91 E-value=2.4e-09 Score=85.87 Aligned_cols=57 Identities=30% Similarity=0.496 Sum_probs=49.4
Q ss_pred ccCcccChhhhhccCCC----CCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 28 SSQAKVNYYSHLQVGSE----ATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
...+..+.|+||+|+.+ -+.++||++|++++.+|||||||. ..+.|..+++|||.|+
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence 45667789999999863 245889999999999999999975 7899999999999986
No 66
>KOG0723|consensus
Probab=98.89 E-value=6.7e-09 Score=63.51 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=52.4
Q ss_pred hhhcccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 24 SALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 24 ~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
..+.+.++..+.-.||||+++++.+.||.++|++....|||++++ --.-..||||+++|..
T Consensus 47 GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS----PYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 47 GGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS----PYLASKINEAKDLLEG 107 (112)
T ss_pred cccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC----HHHHHHHHHHHHHHhc
Confidence 445578888999999999999999999999999999999999987 2344569999999863
No 67
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.1e-09 Score=72.95 Aligned_cols=58 Identities=33% Similarity=0.492 Sum_probs=51.0
Q ss_pred cccChhhhhccCC---CCCHHHHHHHHHHHHHhhCCCCC--CCcHHHHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGS---EATQNEIKASYYRLSKLYHPDKN--KGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPDk~--~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...|.|.+||++. .+++.+|.++.++.+.+||||+. +++-++.+.|.+|+.||++|+|
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D 103 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD 103 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhcc
Confidence 4589999999996 67889999999999999999995 3335689999999999999997
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=5.7e-06 Score=54.60 Aligned_cols=55 Identities=35% Similarity=0.471 Sum_probs=48.4
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-------HHHHHHHHHHHHHHHHh
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-------EAAAKKFREITAAYEVL 86 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~f~~i~~Ay~~L 86 (89)
..++|.+||+....+..+|+++|+++....|||+.... +...+.++.|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999999999999999999995331 56899999999999754
No 69
>KOG0431|consensus
Probab=97.73 E-value=5.2e-05 Score=56.79 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=39.6
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-------HHHHHHHHHHHHHHHH
Q psy3538 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-------EAAAKKFREITAAYEV 85 (89)
Q Consensus 35 ~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~f~~i~~Ay~~ 85 (89)
=|.=+++..=.+.++||++||+.++..||||.+.. --+++.|-.+.+|++.
T Consensus 390 ~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 390 GWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred CcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 34445555667999999999999999999998764 1267777888888765
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.46 E-value=0.00034 Score=44.28 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=29.3
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG 68 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~ 68 (89)
..+......||||++..+.++|.+.|.+|....+|+++++
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS 93 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS 93 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC
Confidence 3555688999999999999999999999999999999876
No 71
>KOG3192|consensus
Probab=97.28 E-value=0.00061 Score=44.53 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=47.7
Q ss_pred CcccChhhhhccCC--CCCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhC
Q psy3538 30 QAKVNYYSHLQVGS--EATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 30 ~~~~~~y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d 88 (89)
....++|.++|... ..+++.++-.|.-..++.|||+.... ..+.+....+++||.+|+|
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~ 70 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKD 70 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHh
Confidence 35678999998664 56777888899999999999994432 4577888999999999987
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0029 Score=41.70 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=42.0
Q ss_pred ChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhC
Q psy3538 34 NYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGE 88 (89)
Q Consensus 34 ~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d 88 (89)
+++..+|..+.. +.+.++..|+.+.+.+|||+....+ .+.+.+..++.||.+|.|
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~ 63 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKD 63 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHH
Confidence 345556665533 4567999999999999999987642 256788999999999876
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=95.19 E-value=0.068 Score=29.27 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=26.4
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHH
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSK 59 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~ 59 (89)
...++|++|||+++.+.+.|-.+|+....
T Consensus 3 ~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 3 DVEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred CHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999988
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=94.50 E-value=0.15 Score=34.44 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy3538 42 GSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86 (89)
Q Consensus 42 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L 86 (89)
+++|+.+||++|+.++..+|- ++ ++.-..|..||+.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~----gd----~~~~~~IEaAYD~I 37 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA----GD----EKSREAIEAAYDAI 37 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHHH
Confidence 578999999999999999993 22 35555688888764
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=92.03 E-value=0.73 Score=28.47 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCcHH----HHHHHHHHHHHHHHhh
Q psy3538 44 EATQNEIKASYYRLSKLYHPDKNKGSEA----AAKKFREITAAYEVLG 87 (89)
Q Consensus 44 ~a~~~~Ik~ayr~l~~~~HPDk~~~~~~----~~~~f~~i~~Ay~~L~ 87 (89)
..+..+++.+.|.+-++.|||..+..|+ -++-++.++.-.+.|+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 4567789999999999999998765432 3444555555444443
No 76
>KOG0724|consensus
Probab=89.78 E-value=0.56 Score=33.58 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCC----cHHHHHHHHHHHHHHHHhhC
Q psy3538 45 ATQNEIKASYYRLSKLYHPDKNKG----SEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 45 a~~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~~f~~i~~Ay~~L~d 88 (89)
++..+|+.+|+..+...||++... ....++.+++|.+||.+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~ 51 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDD 51 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 567789999999999999998742 13467889999999999985
No 77
>KOG3442|consensus
Probab=85.07 E-value=6.1 Score=25.08 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=34.5
Q ss_pred CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG 68 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~ 68 (89)
.+-.....||+|++....++|.+.|..|.....+.+++.
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 344567899999999999999999999999999999875
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=80.77 E-value=8.8 Score=22.29 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=28.1
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG 68 (89)
Q Consensus 34 ~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~ 68 (89)
|--+++|+++-++..||+.+-++.+++..--..++
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 44578999999999999999999998875544443
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=78.55 E-value=1.3 Score=17.28 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhh
Q psy3538 75 KFREITAAYEVLG 87 (89)
Q Consensus 75 ~f~~i~~Ay~~L~ 87 (89)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4667788887764
No 80
>COG2879 Uncharacterized small protein [Function unknown]
Probab=65.82 E-value=15 Score=20.56 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCCCCCCcHHHHHHHHHHHHH
Q psy3538 52 ASYYRLSKLYHPDKNKGSEAAAKKFREITAA 82 (89)
Q Consensus 52 ~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~A 82 (89)
..|.+-.++.|||+.+- ..+|.|.+-.+|
T Consensus 26 dnYVehmr~~hPd~p~m--T~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPPM--TYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCcc--cHHHHHHHHHHh
Confidence 35788889999999875 245555554443
No 81
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=58.96 E-value=14 Score=17.19 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy3538 47 QNEIKASYYRLSKLYHP 63 (89)
Q Consensus 47 ~~~Ik~ayr~l~~~~HP 63 (89)
.++.|.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 46789999999999994
No 82
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=54.97 E-value=25 Score=18.53 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.3
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHH
Q psy3538 36 YSHLQVGSEATQNEIKASYYRLSK 59 (89)
Q Consensus 36 y~iLgv~~~a~~~~Ik~ayr~l~~ 59 (89)
+.+=|+.+..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 356689999999999998887554
No 83
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=54.18 E-value=42 Score=19.48 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=28.0
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG 68 (89)
Q Consensus 35 ~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~ 68 (89)
--.+.|+.+-++.+||+.+=.+.+++..--..+.
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 3456788899999999999999999987666554
No 84
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=51.94 E-value=4.9 Score=22.22 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred ccChhhhhccCCCCCHHHH-HHHHHHHHHhhCCCC
Q psy3538 32 KVNYYSHLQVGSEATQNEI-KASYYRLSKLYHPDK 65 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~I-k~ayr~l~~~~HPDk 65 (89)
..+.+++||.+ ++++ ...........|||=
T Consensus 5 s~~~~~i~G~~----~~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYS----PEEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-----HHHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCC----HHHhccCCHHHHHhhcCHHH
Confidence 35678889884 4566 556677888899965
No 85
>KOG3960|consensus
Probab=47.42 E-value=17 Score=25.84 Aligned_cols=16 Identities=19% Similarity=0.598 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhC
Q psy3538 73 AKKFREITAAYEVLGE 88 (89)
Q Consensus 73 ~~~f~~i~~Ay~~L~d 88 (89)
..+++.||||+|+|+.
T Consensus 127 RRRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5678999999999973
No 86
>KOG2320|consensus
Probab=42.79 E-value=48 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy3538 42 GSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86 (89)
Q Consensus 42 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L 86 (89)
+..+.-++||.+++++.+.||| +++...+.+|.+.|
T Consensus 398 Ps~~~mEqvk~k~~~m~r~YSP---------~kkl~~Llk~ckLl 433 (651)
T KOG2320|consen 398 PSDVLMEQVKQKFTAMQRRYSP---------SKKLHALLKACKLL 433 (651)
T ss_pred CcHHHHHHHHHHHHHHHHhhCh---------HHHHHHHHHHHHHH
Confidence 3455567899999999999999 45555666666654
No 87
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=41.95 E-value=22 Score=18.37 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=17.9
Q ss_pred hccCCCCCHHHHHHHHHHHHHh
Q psy3538 39 LQVGSEATQNEIKASYYRLSKL 60 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l~~~ 60 (89)
=||+++++.++|++.|.+....
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTSTE
T ss_pred cCCCCcCCHHHHHHHHHHhhhc
Confidence 4789999999999999875443
No 88
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=40.76 E-value=21 Score=20.31 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.1
Q ss_pred hccCCCCCHHHHHHHHHHHHHhhCCC
Q psy3538 39 LQVGSEATQNEIKASYYRLSKLYHPD 64 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l~~~~HPD 64 (89)
..+..+.+.++||+.|.+......|-
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCHH
Confidence 45677889999999999998877773
No 89
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=40.66 E-value=27 Score=20.97 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=18.8
Q ss_pred hhccCCCCCHHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLSK 59 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~~ 59 (89)
+|.|+++|+..+||+|..++--
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~ 46 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFG 46 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 5789999999999999987753
No 90
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=40.23 E-value=68 Score=22.60 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=31.9
Q ss_pred hhhccCCCCCH-HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 37 SHLQVGSEATQ-NEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 37 ~iLgv~~~a~~-~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
.|=|-+.-.++ .-++++|++|++-.--..... ..+.++.+-|.|++|.
T Consensus 84 ~ir~e~~ll~~~~l~~ksykqla~d~gmqi~~~---~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 84 RIRGESTLLDPETLPKKSYKQLARDMGMQIVNE---PSEHMLGLLELYEYLK 132 (268)
T ss_pred eecccccccChhhcchHHHHHHHHHhCceecCC---chHHHHHHHHHHHhcC
Confidence 33343333343 458999999998765444332 3688888999999885
No 91
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=39.29 E-value=77 Score=20.75 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHhhCCCCCCC----------------cHHHHHHHHHHHHHHH
Q psy3538 57 LSKLYHPDKNKG----------------SEAAAKKFREITAAYE 84 (89)
Q Consensus 57 l~~~~HPDk~~~----------------~~~~~~~f~~i~~Ay~ 84 (89)
.+...|||-+.. ++...+.|..+|.+|+
T Consensus 66 ~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 66 EALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred HHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 356779998742 2457889999999996
No 92
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=37.88 E-value=85 Score=20.36 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy3538 70 EAAAKKFREITAAYE 84 (89)
Q Consensus 70 ~~~~~~f~~i~~Ay~ 84 (89)
+...+.|..+|.+|+
T Consensus 90 ~~~~~~L~~lN~~Y~ 104 (158)
T TIGR03180 90 EETRAALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788899999996
No 93
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=37.26 E-value=42 Score=24.33 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=27.8
Q ss_pred ccCcccChhhhh-----c-cCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy3538 28 SSQAKVNYYSHL-----Q-VGSEATQNEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 28 ~~~~~~~~y~iL-----g-v~~~a~~~~Ik~ayr~l~~~~HPDk~ 66 (89)
+..+-++.-++| | .+++.+.+++-+|.+-.-.-+|||.+
T Consensus 25 S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 25 SEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCC
Confidence 334444455555 2 23356899999999999999999985
No 94
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=36.61 E-value=58 Score=16.55 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy3538 71 AAAKKFREITAAYEVLG 87 (89)
Q Consensus 71 ~~~~~f~~i~~Ay~~L~ 87 (89)
+.++.-+.++.|+.+|.
T Consensus 25 ~eeEt~qkL~~AF~iLa 41 (41)
T PF11590_consen 25 EEEETRQKLRRAFDILA 41 (41)
T ss_dssp -HHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhhC
Confidence 45777888888888873
No 95
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=35.26 E-value=47 Score=19.94 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=25.4
Q ss_pred CcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy3538 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 66 (89)
-....+|.||-++...|..+|=+.=-..+++-+||-+
T Consensus 8 vs~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 8 VSPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 3557899999999988876654444444555577653
No 96
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=35.09 E-value=84 Score=17.46 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 48 NEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 48 ~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
..+..-||..+...-.|....+.....+++.+.|||+-.+
T Consensus 27 ~AmNaYYr~Vv~tlvqDqltKNa~vl~RiqHLdEAY~KV~ 66 (68)
T PF09628_consen 27 HAMNAYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYQKVK 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4577888888888888988777778999999999998653
No 97
>CHL00030 rpl23 ribosomal protein L23
Probab=34.18 E-value=40 Score=20.06 Aligned_cols=21 Identities=29% Similarity=0.214 Sum_probs=18.2
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
+|-|+++++..+||+|..++-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999998764
No 98
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=32.67 E-value=1.4e+02 Score=20.46 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=22.9
Q ss_pred HHhhhhhhhhcccCcccChhhhhccCCCCCHHHHHHHHHHHHH
Q psy3538 17 KYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSK 59 (89)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~ 59 (89)
....+..+++.+. +-||-.+|||.-..+.+ |+.|-++.-
T Consensus 23 ~~LmqG~rG~~SP--gLdPLtaLGIeArsd~E--RrryAEl~v 61 (200)
T TIGR03759 23 QQLMQGPRGVYSP--GLDPLTALGIEARSDEE--RRRYAELWV 61 (200)
T ss_pred HHHhcCCccCcCC--CCChhhhhccccCCHHH--HHHHHHHHH
Confidence 3334444454443 36999999998765544 555544443
No 99
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.63 E-value=53 Score=21.94 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHH-----------HHHhhCCCCCCC-----------------------cHHHHHHHHHHHHHHH
Q psy3538 42 GSEATQNEIKASYYR-----------LSKLYHPDKNKG-----------------------SEAAAKKFREITAAYE 84 (89)
Q Consensus 42 ~~~a~~~~Ik~ayr~-----------l~~~~HPDk~~~-----------------------~~~~~~~f~~i~~Ay~ 84 (89)
.+.++.+++..+... .+.+-|||-.+. .++-.++|..+|+||.
T Consensus 41 ~pf~s~~~l~~am~~~v~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~ 117 (176)
T COG3195 41 RPFASAEGLHAAMCRAVRAASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV 117 (176)
T ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 556666666666543 345779998631 1456889999999995
No 100
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=32.33 E-value=79 Score=19.60 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=18.9
Q ss_pred ccCcccChhhhhccCCCC-----CHHHHHHHHHHHHHh
Q psy3538 28 SSQAKVNYYSHLQVGSEA-----TQNEIKASYYRLSKL 60 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a-----~~~~Ik~ayr~l~~~ 60 (89)
.-.+.+++++.|||+-+. ..--|=+.|.+....
T Consensus 14 ~LssAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~ 51 (113)
T PRK00810 14 RLSSAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQ 51 (113)
T ss_pred HcccHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHh
Confidence 344567788888887543 233355555555443
No 101
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=31.98 E-value=30 Score=25.37 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.5
Q ss_pred hhhcccCcccChhhhhccCCCCCHHHHHHHHHHH------HHhhCCC
Q psy3538 24 SALYSSQAKVNYYSHLQVGSEATQNEIKASYYRL------SKLYHPD 64 (89)
Q Consensus 24 ~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l------~~~~HPD 64 (89)
+..++.....|-.+-|||+-..+.++++++..+. +-.|||.
T Consensus 114 rs~sSksGsaDvleaLGv~l~~~~e~~~~~l~~~g~~FlfAp~~hp~ 160 (338)
T COG0547 114 RSVSSKSGSADVLEALGVNLELSPEQAARALEETGIGFLFAPAYHPA 160 (338)
T ss_pred CCCCCCCcHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEEccccCHH
Confidence 3444666779999999999999999999998776 4556663
No 102
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=31.44 E-value=1.2e+02 Score=19.57 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q psy3538 71 AAAKKFREITAAYE 84 (89)
Q Consensus 71 ~~~~~f~~i~~Ay~ 84 (89)
...+.|..+|.+|+
T Consensus 91 ~~~~~L~~lN~~Y~ 104 (157)
T TIGR03164 91 EEFARFTRLNNAYR 104 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 45678888999996
No 103
>KOG0718|consensus
Probab=31.43 E-value=47 Score=25.81 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=24.1
Q ss_pred ccCcccChhhhhccC-----------CCCCHHHHHHHHHHHHHh
Q psy3538 28 SSQAKVNYYSHLQVG-----------SEATQNEIKASYYRLSKL 60 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~-----------~~a~~~~Ik~ayr~l~~~ 60 (89)
+.+...--|+.+|.. +..+++|||.-|+++.+.
T Consensus 66 sDp~kRaIYD~~G~qGL~t~gwEl~~r~~tpeEIreE~Erl~r~ 109 (546)
T KOG0718|consen 66 SDPQKRAIYDNYGEQGLKTEGWELGFRGKTPEEIREEYERLQRE 109 (546)
T ss_pred cChHHHHHHHHhhhccccccCceeecCCCCHHHHHHHHHHHHHH
Confidence 556666677777643 567999999999877653
No 104
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=30.65 E-value=2e+02 Score=21.35 Aligned_cols=57 Identities=7% Similarity=0.068 Sum_probs=34.7
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCC-CcHHHHHHHHHHHHHHH
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNK-GSEAAAKKFREITAAYE 84 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~~~~~~~~f~~i~~Ay~ 84 (89)
......+.|+.|||++..-..+|=+.-.+.+.+.-|-... ++|.-...+..+.++..
T Consensus 245 ~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~ 302 (351)
T CHL00185 245 NDLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANL 302 (351)
T ss_pred hhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHH
Confidence 4556789999999998654445555556667777776643 33444444444444333
No 105
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=30.10 E-value=1.1e+02 Score=17.10 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCc
Q psy3538 45 ATQNEIKASYYRLSKLYHPDKNKGS 69 (89)
Q Consensus 45 a~~~~Ik~ayr~l~~~~HPDk~~~~ 69 (89)
.+.++|..+++.+.+..|-|..++.
T Consensus 42 ~~~~~l~~~wk~ll~~q~HD~i~Gt 66 (79)
T smart00872 42 YPSEQLEELWKALLLNQFHDAITGT 66 (79)
T ss_pred CcHHHHHHHHHHHHHhcCcccCCcc
Confidence 4578899999999999999998873
No 106
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=29.44 E-value=1.2e+02 Score=22.37 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhCCCCCCCcHHHHHHHHHHHH
Q psy3538 51 KASYYRLSKLYHPDKNKGSEAAAKKFREITA 81 (89)
Q Consensus 51 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~ 81 (89)
.+|..-+...+|||.+++.++....|.++.+
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~LKe 74 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFELKE 74 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 5678888889999998886667777766654
No 107
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.62 E-value=59 Score=18.65 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.0
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
.+-|+++++..+||++..++-
T Consensus 18 ~F~V~~~anK~eIK~avE~lf 38 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLF 38 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567899999999999988773
No 108
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=28.55 E-value=77 Score=19.33 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=34.4
Q ss_pred ccCcccChhhhhccCCCC-----CHHHHHHHHHHHHHhhCCCCCCCcHHH-HHHHHHHHHHHHH
Q psy3538 28 SSQAKVNYYSHLQVGSEA-----TQNEIKASYYRLSKLYHPDKNKGSEAA-AKKFREITAAYEV 85 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a-----~~~~Ik~ayr~l~~~~HPDk~~~~~~~-~~~f~~i~~Ay~~ 85 (89)
.-.+.+++++.|||+-+. ..--|=+.|.+......+....++.+. ...=..+.+||+.
T Consensus 10 ~L~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~d 73 (105)
T PF03206_consen 10 KLSSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQD 73 (105)
T ss_pred hccCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344567889999998653 334477778777777766432222222 2223456677754
No 109
>smart00362 RRM_2 RNA recognition motif.
Probab=28.51 E-value=63 Score=16.05 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=17.0
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|-|++.+.+.++|++.+.+..
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcC
Confidence 457888999999999887653
No 110
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=27.94 E-value=1.3e+02 Score=17.25 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHH
Q psy3538 42 GSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYE 84 (89)
Q Consensus 42 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~ 84 (89)
..+.++++|-.-.++.+...-|+....-..+.+...++..+|.
T Consensus 32 ~~~I~PEeIv~iH~~~v~~l~~~~~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 32 EKDISPEEIVEIHKSAVQELSPSLPEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HTT--HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999973322334455555555553
No 111
>smart00360 RRM RNA recognition motif.
Probab=27.70 E-value=68 Score=15.81 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=16.2
Q ss_pred hccCCCCCHHHHHHHHHHHH
Q psy3538 39 LQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l~ 58 (89)
-|++.+.+.++|+..+.+..
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 46788889999999998654
No 112
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=27.26 E-value=2.3e+02 Score=21.86 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=26.3
Q ss_pred hhhhccCCCC---CHHHHHHHHHHHHHhhCCCCCCCcHH
Q psy3538 36 YSHLQVGSEA---TQNEIKASYYRLSKLYHPDKNKGSEA 71 (89)
Q Consensus 36 y~iLgv~~~a---~~~~Ik~ayr~l~~~~HPDk~~~~~~ 71 (89)
.+.+.++.++ +...|++-...+.|..|||-.-++++
T Consensus 385 ~~~~~lg~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee 423 (457)
T PF13337_consen 385 DKYFKLGSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEE 423 (457)
T ss_pred HhhEeeCCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHH
Confidence 3445566655 45679999999999999997665444
No 113
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=26.79 E-value=1.2e+02 Score=16.73 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCCCCCCcHHHHHHHHHHH
Q psy3538 52 ASYYRLSKLYHPDKNKGSEAAAKKFREIT 80 (89)
Q Consensus 52 ~ayr~l~~~~HPDk~~~~~~~~~~f~~i~ 80 (89)
..|-+-....|||..+-+ -.|.|..-.
T Consensus 26 e~Yv~H~~~~HP~~p~ms--~~eF~r~r~ 52 (65)
T PF04328_consen 26 ERYVEHMRRHHPDEPPMS--EREFFRERQ 52 (65)
T ss_pred HHHHHHHHHHCcCCCCCC--HHHHHHHHH
Confidence 357777889999997653 244444433
No 114
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=26.63 E-value=1.3e+02 Score=20.53 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=24.6
Q ss_pred hhhcccCcccChhhhhccCCCCCHHHHHHHHHHH
Q psy3538 24 SALYSSQAKVNYYSHLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 24 ~~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l 57 (89)
+...+.....|..+.||++-..+.+++++...+.
T Consensus 40 r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~ 73 (252)
T PF00591_consen 40 RGVTSKSGSADVLEALGVPIDLSPEEAQAQLEET 73 (252)
T ss_dssp SGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHH
T ss_pred CCccccccHHHHHHhcCCCcCCCHHHHHHHhhcc
Confidence 3334556678999999999999999999998775
No 115
>KOG3242|consensus
Probab=26.11 E-value=54 Score=22.26 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHhhCCCCCCC---cHHHHHHHHHHHHHHHHhh
Q psy3538 55 YRLSKLYHPDKNKG---SEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 55 r~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~ 87 (89)
+.++++|+||-... .......|-.|.|...-|.
T Consensus 158 keL~~Rw~P~~~~~aPkK~~~HrAldDI~ESI~ELq 193 (208)
T KOG3242|consen 158 KELARRWYPDIKARAPKKKATHRALDDIRESIKELQ 193 (208)
T ss_pred HHHHHHhCchhhccCcccccccchHHHHHHHHHHHH
Confidence 67899999987432 2345666667776665554
No 116
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=26.03 E-value=2.7e+02 Score=20.73 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=28.0
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 66 (89)
......+.|+.|||++..-..+|=+.-.+.+.+.-|-..
T Consensus 249 ~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~L 287 (355)
T PRK13654 249 RDHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVL 287 (355)
T ss_pred ecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeee
Confidence 456678999999999865555555555667777777764
No 117
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=25.91 E-value=68 Score=18.88 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=17.8
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
.|-|++.++..|||++..++-
T Consensus 24 ~F~V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKLF 44 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 567889999999999988763
No 118
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=25.91 E-value=1.7e+02 Score=18.80 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy3538 70 EAAAKKFREITAAYE 84 (89)
Q Consensus 70 ~~~~~~f~~i~~Ay~ 84 (89)
+...+.|..+|.+|+
T Consensus 93 ~~~~~~L~~lN~~Y~ 107 (159)
T PF09349_consen 93 EEELAELAALNQAYE 107 (159)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456778889999996
No 119
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.44 E-value=30 Score=18.44 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=19.5
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHH
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
+..+.=+.|||++.+-..-|+++-+++.
T Consensus 25 tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 25 TLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3345566788887777777888877764
No 120
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=25.22 E-value=2.8e+02 Score=20.38 Aligned_cols=39 Identities=8% Similarity=0.150 Sum_probs=27.9
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 66 (89)
......+.|+.|||++..-..+|=+.-.+.+.+.-|-..
T Consensus 229 ~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~L 267 (323)
T cd01047 229 NDHQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAVL 267 (323)
T ss_pred eccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeee
Confidence 456678999999999865445555555667777777664
No 121
>KOG3767|consensus
Probab=24.59 E-value=93 Score=22.87 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=24.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCCCC
Q psy3538 40 QVGSEATQNEIKASYYRLSKLYHPDKNK 67 (89)
Q Consensus 40 gv~~~a~~~~Ik~ayr~l~~~~HPDk~~ 67 (89)
.++++.+.+++-+|.+..-.-+|||.+.
T Consensus 61 ~~~p~~t~~~lW~Akkl~dS~~HPDTgE 88 (328)
T KOG3767|consen 61 KVPPGLTDDELWKAKKLYDSTFHPDTGE 88 (328)
T ss_pred CcCCCCcHHHHHHHHHHHhcccCCCCCC
Confidence 4667788999999999999999999964
No 122
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=24.48 E-value=1.4e+02 Score=18.07 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=28.1
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDK 65 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk 65 (89)
.+-...+++.++.+.+++++++++.......+.
T Consensus 27 ~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~ 59 (116)
T TIGR00824 27 QNNVGAVPFVPGENAETLQEKYNAALADLDTEE 59 (116)
T ss_pred cCCeEEEEcCCCcCHHHHHHHHHHHHHhcCCCC
Confidence 445888899999999999999999999986654
No 123
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=24.17 E-value=83 Score=15.67 Aligned_cols=20 Identities=5% Similarity=0.282 Sum_probs=16.8
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|-|++.+.+.++|+..+++.
T Consensus 4 i~~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKF 23 (74)
T ss_pred EeCCCCccCHHHHHHHHHhc
Confidence 45888889999999999885
No 124
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.02 E-value=1.6e+02 Score=20.64 Aligned_cols=32 Identities=19% Similarity=0.635 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 47 QNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 47 ~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.+.+...+.+++..+.| +.|..|.+||..|++
T Consensus 181 ~~~ld~~l~~~~~~Fd~----------~~Y~~v~~AY~lLgk 212 (291)
T PF10475_consen 181 EEQLDSDLSKVCQDFDP----------DKYSKVQEAYQLLGK 212 (291)
T ss_pred HHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhh
Confidence 34456666666665555 566678888887764
No 125
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=23.59 E-value=2.1e+02 Score=18.69 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCcccChhhhhccCC-C---CCHHHHHHHHHHHHHh
Q psy3538 7 NVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGS-E---ATQNEIKASYYRLSKL 60 (89)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~-~---a~~~~Ik~ayr~l~~~ 60 (89)
.+.++.|..--+.+...+.+.-..+-.++.+-||++. + -+...||++..+++..
T Consensus 7 pRLiL~~l~TeAvrt~sr~I~lG~S~~~flr~lG~~~tGG~~g~~~~lreQ~~rL~~~ 64 (161)
T PF04796_consen 7 PRLILAWLCTEAVRTKSREIELGRSLSEFLRRLGLSPTGGRRGTITRLREQMERLFAC 64 (161)
T ss_pred hHHHHHHHHHHHhccCCceEeeccCHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHhh
Confidence 4566777666666666555554445578889999997 2 2678899999888754
No 126
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=23.54 E-value=3.1e+02 Score=20.29 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=27.1
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 66 (89)
......+.|+.|||++.--..+|=+.-.+.+.+.-|-..
T Consensus 239 ~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~L 277 (337)
T TIGR02029 239 RDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTL 277 (337)
T ss_pred hhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeee
Confidence 455678999999999865444444555666777777664
No 127
>PF14893 PNMA: PNMA
Probab=23.44 E-value=72 Score=23.37 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=18.2
Q ss_pred hhhhhccCCCCCHHHHHHHHHHH
Q psy3538 35 YYSHLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 35 ~y~iLgv~~~a~~~~Ik~ayr~l 57 (89)
..=|+||+.+++.+||..+-+..
T Consensus 20 ~lLv~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 20 ALLVLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred hheeecCCCCCCHHHHHHHHHHh
Confidence 34477999999999999887653
No 128
>KOG1647|consensus
Probab=23.27 E-value=81 Score=22.13 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=25.6
Q ss_pred ccCcccChhhhhccCCC-CCHHHHHHHHHHHHHh
Q psy3538 28 SSQAKVNYYSHLQVGSE-ATQNEIKASYYRLSKL 60 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~-a~~~~Ik~ayr~l~~~ 60 (89)
....+.|.|.+.|+.++ .....+|..|.+.+..
T Consensus 111 ~~~dg~~~~~LtgL~rgGqqv~~~r~~Y~kAve~ 144 (255)
T KOG1647|consen 111 LYQDGIDAFPLTGLGRGGQQVARLRENYTKAVEL 144 (255)
T ss_pred hhcccCccccccccccchHHHHHHHHHHHHHHHH
Confidence 34557899999999984 5678899999876543
No 129
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=23.24 E-value=1.4e+02 Score=16.16 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHh--hCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 49 EIKASYYRLSKL--YHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 49 ~Ik~ayr~l~~~--~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
-+.+.+.+++.. -+|... -|.+-+....+.-||..|+|
T Consensus 16 Rl~~Rl~~l~~~la~~p~~S--ip~a~~~wa~tkaAYRF~~N 55 (58)
T PF14706_consen 16 RLTRRLVKLAESLAEKPGAS--IPQACQDWAETKAAYRFFRN 55 (58)
T ss_dssp HHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHCCCCc--cchhccCHHHHHHHHHhhcC
Confidence 355666666553 355442 25566677777788888765
No 130
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=22.93 E-value=1.2e+02 Score=15.43 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 51 KASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 51 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
.+.++...+.-|||... .+....+.+.|..|+
T Consensus 12 ~~~~~~~~~~~~~~~~~-----~~i~~~~~~~W~~l~ 43 (66)
T cd00084 12 SQEHRAEVKAENPGLSV-----GEISKILGEMWKSLS 43 (66)
T ss_pred HHHHHHHHHHHCcCCCH-----HHHHHHHHHHHHhCC
Confidence 44556666777777432 234444444444443
No 131
>PRK10613 hypothetical protein; Provisional
Probab=22.81 E-value=34 Score=19.61 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=8.5
Q ss_pred CHHHHHHHHHH
Q psy3538 46 TQNEIKASYYR 56 (89)
Q Consensus 46 ~~~~Ik~ayr~ 56 (89)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56779999884
No 132
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=22.59 E-value=1.2e+02 Score=15.60 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=14.8
Q ss_pred HHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 54 YYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 54 yr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
.|...+.-||+... .+..+.|.+.|..|+
T Consensus 15 ~r~~~~~~~p~~~~-----~~i~~~~~~~W~~ls 43 (66)
T cd01390 15 QRPKLKKENPDASV-----TEVTKILGEKWKELS 43 (66)
T ss_pred HHHHHHHHCcCCCH-----HHHHHHHHHHHHhCC
Confidence 45555666777432 344444554444443
No 133
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=22.21 E-value=83 Score=19.97 Aligned_cols=18 Identities=28% Similarity=0.360 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhCCCC
Q psy3538 48 NEIKASYYRLSKLYHPDK 65 (89)
Q Consensus 48 ~~Ik~ayr~l~~~~HPDk 65 (89)
.-|+++||++.-+.||=.
T Consensus 12 ~vI~AaYrQVf~~~~~~~ 29 (131)
T PF00427_consen 12 AVIRAAYRQVFGNDHPME 29 (131)
T ss_dssp HHHHHHHHHHHSSSSSHC
T ss_pred HHHHHHHHHHhcCccchh
Confidence 459999999998888744
No 134
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=21.91 E-value=36 Score=19.49 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=8.5
Q ss_pred CHHHHHHHHHH
Q psy3538 46 TQNEIKASYYR 56 (89)
Q Consensus 46 ~~~~Ik~ayr~ 56 (89)
+.++||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56778999884
No 135
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.70 E-value=1.4e+02 Score=16.15 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 52 ASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 52 ~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
+..|...+.-||+... .+..+.|.+.|..|+
T Consensus 14 ~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls 44 (72)
T cd01388 14 KRHRRKVLQEYPLKEN-----RAISKILGDRWKALS 44 (72)
T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCC
Confidence 4456666777887532 244444444444443
No 136
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.57 E-value=94 Score=18.12 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.0
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
.|-|++.++..+||++..++-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999998874
No 137
>smart00427 H2B Histone H2B.
Probab=21.47 E-value=1.9e+02 Score=17.13 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=10.9
Q ss_pred HHHHHhhCCCCCCC
Q psy3538 55 YRLSKLYHPDKNKG 68 (89)
Q Consensus 55 r~l~~~~HPDk~~~ 68 (89)
.+..++.|||.+-.
T Consensus 8 ~kvLKqVhpd~giS 21 (89)
T smart00427 8 YKVLKQVHPDTGIS 21 (89)
T ss_pred HHHHHHhCCCcccc
Confidence 56778999999654
No 138
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=21.46 E-value=1.2e+02 Score=18.16 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=19.1
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHhhC
Q psy3538 37 SHLQVGSEATQNEIKASYYRLSKLYH 62 (89)
Q Consensus 37 ~iLgv~~~a~~~~Ik~ayr~l~~~~H 62 (89)
-|.+++.+.+...|+...++|+-++=
T Consensus 6 ~V~NLP~~~d~~~I~~RL~qLsdNCG 31 (90)
T PF11608_consen 6 YVSNLPTNKDPSSIKNRLRQLSDNCG 31 (90)
T ss_dssp EEES--TTS-HHHHHHHHHHHHHTTT
T ss_pred EEecCCCCCCHHHHHHHHHHHhhccC
Confidence 35678888999999999999987663
No 139
>PLN02641 anthranilate phosphoribosyltransferase
Probab=21.40 E-value=71 Score=23.39 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=27.1
Q ss_pred hhcccCcccChhhhhccCCCCCHHHHHHHHHHH
Q psy3538 25 ALYSSQAKVNYYSHLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 25 ~~~~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l 57 (89)
...+.....|..+.||++-..+++++++...+.
T Consensus 113 ~~ss~~GsaDvLeaLGi~~~~~~~~~~~~l~~~ 145 (343)
T PLN02641 113 SSSSACGSADVLEALGVAIDLGPEGVKRCVEEV 145 (343)
T ss_pred CCCCccCHHHHHHHcCCCCCCCHHHHHHHHHhc
Confidence 333556678999999999999999999998873
No 140
>PRK09498 sifA secreted effector protein SifA; Reviewed
Probab=20.80 E-value=2.4e+02 Score=20.65 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCCCCCcHHHHHHHHHHHH
Q psy3538 52 ASYYRLSKLYHPDKNKGSEAAAKKFREITA 81 (89)
Q Consensus 52 ~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~ 81 (89)
+|.+=+...+|||..+..+...+.|.++.+
T Consensus 45 eA~~CI~eLchp~~~~trE~i~~~F~~Lk~ 74 (336)
T PRK09498 45 KADRCLHEMLFADRAPTRERLTEIFFELKE 74 (336)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 344555566677777665556666655543
No 141
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=20.75 E-value=2.4e+02 Score=17.97 Aligned_cols=37 Identities=11% Similarity=0.341 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHH--hhCCCCCCCcHHHHHHHHHHHHHH
Q psy3538 47 QNEIKASYYRLSK--LYHPDKNKGSEAAAKKFREITAAY 83 (89)
Q Consensus 47 ~~~Ik~ayr~l~~--~~HPDk~~~~~~~~~~f~~i~~Ay 83 (89)
..++|.+|+.+-- ..-||..++.+...+...++.+.|
T Consensus 16 I~~LR~QF~~~~~~~~~~~d~~~~~~~~~~~lR~LEe~W 54 (140)
T PF13373_consen 16 IQDLRSQFHSIYGDLNHTPDTMPSPENSQRDLRQLEERW 54 (140)
T ss_pred HHHHHHHHHHHhccccCCccccCCchhhHHHHHHHHHHH
Confidence 3457888888776 245777665444566677766655
No 142
>PRK07394 hypothetical protein; Provisional
Probab=20.54 E-value=74 Score=23.23 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=22.6
Q ss_pred ccChhhhhccCCCC-CHHHHHHHHHH
Q psy3538 32 KVNYYSHLQVGSEA-TQNEIKASYYR 56 (89)
Q Consensus 32 ~~~~y~iLgv~~~a-~~~~Ik~ayr~ 56 (89)
..|.++-|||+-.. +++++++...+
T Consensus 131 saDvLe~LGv~~~~~~~~~~~~~l~~ 156 (342)
T PRK07394 131 LVELWQGLGVDLTGLSLEQVQEGFEQ 156 (342)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence 68999999999988 99999998887
No 143
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=20.53 E-value=2.4e+02 Score=18.27 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=15.1
Q ss_pred HHHHHhhCCCCCCCcHHHHHHHHHHHHHH
Q psy3538 55 YRLSKLYHPDKNKGSEAAAKKFREITAAY 83 (89)
Q Consensus 55 r~l~~~~HPDk~~~~~~~~~~f~~i~~Ay 83 (89)
....+..||++..+..-..++-..-.+||
T Consensus 16 ~~yL~e~hPe~~~d~~fI~~Rad~Aa~aY 44 (144)
T PF08989_consen 16 LSYLRESHPERAGDTEFIEERADMAAEAY 44 (144)
T ss_dssp HHHHHHH-GGGTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhccchHHHHHHHHHHHHHH
Confidence 45567889999887533333333333333
No 144
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=20.41 E-value=93 Score=18.43 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHH
Q psy3538 44 EATQNEIKASYYRL 57 (89)
Q Consensus 44 ~a~~~~Ik~ayr~l 57 (89)
...+..|+.|||+|
T Consensus 77 pl~P~hlreA~rrL 90 (90)
T PF04719_consen 77 PLQPDHLREAYRRL 90 (90)
T ss_dssp S--HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhC
Confidence 45788999999986
No 145
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=3.4e+02 Score=21.28 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCcHH
Q psy3538 46 TQNEIKASYYRLSKLYHPDKNKGSEA 71 (89)
Q Consensus 46 ~~~~Ik~ayr~l~~~~HPDk~~~~~~ 71 (89)
+...+|+....|.+..|||+.-+.++
T Consensus 415 Dviavkrt~SGLlKLL~Pd~t~~kee 440 (683)
T COG4930 415 DVIAVKRTTSGLLKLLFPDKTFDKEE 440 (683)
T ss_pred hhHHHHHHHHHHHHHhCCCCCcCHHH
Confidence 45568999999999999999877543
No 146
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.26 E-value=1e+02 Score=17.95 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.3
Q ss_pred hhhccCCCCCHHHHHHHHHHHH
Q psy3538 37 SHLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 37 ~iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
-.+.|+++++..+||++..++-
T Consensus 23 ~tF~V~~~atK~~Ik~aie~iy 44 (91)
T PF00276_consen 23 YTFEVDPRATKTEIKEAIEKIY 44 (91)
T ss_dssp EEEEETTTSTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHhhc
Confidence 3577899999999999987764
No 147
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=20.12 E-value=66 Score=16.82 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=12.5
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy3538 40 QVGSEATQNEIKASYYRL 57 (89)
Q Consensus 40 gv~~~a~~~~Ik~ayr~l 57 (89)
||+++++.++|+..+...
T Consensus 5 nlp~~~~~~~l~~~f~~~ 22 (70)
T PF14259_consen 5 NLPPSTTEEDLRNFFSRF 22 (70)
T ss_dssp SSTTT--HHHHHHHCTTS
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 688888888888877654
Done!