Query psy3538
Match_columns 89
No_of_seqs 144 out of 1279
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 19:14:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 6.3E-22 2.1E-26 114.5 6.9 60 29-88 3-62 (79)
2 2ctr_A DNAJ homolog subfamily 99.9 2.8E-21 9.4E-26 114.0 8.1 60 29-89 3-62 (88)
3 2ctp_A DNAJ homolog subfamily 99.8 2.8E-21 9.7E-26 111.5 7.3 59 29-88 3-61 (78)
4 2yua_A Williams-beuren syndrom 99.8 2.3E-21 7.9E-26 116.6 6.5 61 28-88 12-72 (99)
5 2ys8_A RAB-related GTP-binding 99.8 2.3E-21 8E-26 114.9 6.1 57 31-88 25-81 (90)
6 1hdj_A Human HSP40, HDJ-1; mol 99.8 4.6E-21 1.6E-25 110.4 6.2 56 32-88 2-57 (77)
7 2ej7_A HCG3 gene; HCG3 protein 99.8 1E-20 3.4E-25 110.1 7.5 61 29-89 5-66 (82)
8 2ctw_A DNAJ homolog subfamily 99.8 9.6E-21 3.3E-25 115.7 7.7 61 28-88 12-72 (109)
9 1iur_A KIAA0730 protein; DNAJ 99.8 2.6E-21 8.9E-26 114.5 5.0 61 28-88 11-72 (88)
10 2ctq_A DNAJ homolog subfamily 99.8 8.5E-21 2.9E-25 116.4 6.6 60 29-88 16-75 (112)
11 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.4E-20 4.7E-25 111.0 6.8 59 29-88 13-71 (88)
12 1wjz_A 1700030A21RIK protein; 99.8 1.1E-20 3.7E-25 112.3 6.2 62 28-89 11-78 (94)
13 2dmx_A DNAJ homolog subfamily 99.8 2.2E-20 7.6E-25 110.8 6.9 60 29-88 5-65 (92)
14 2och_A Hypothetical protein DN 99.8 3.8E-20 1.3E-24 105.6 6.6 55 31-88 6-60 (73)
15 2lgw_A DNAJ homolog subfamily 99.8 5.5E-20 1.9E-24 110.8 7.4 56 33-88 2-58 (99)
16 1faf_A Large T antigen; J doma 99.8 1.7E-20 5.7E-25 108.9 3.6 55 30-88 8-64 (79)
17 2guz_A Mitochondrial import in 99.8 4E-20 1.4E-24 105.3 5.1 58 27-88 8-66 (71)
18 1bq0_A DNAJ, HSP40; chaperone, 99.8 1E-20 3.4E-25 114.5 2.7 58 32-89 2-59 (103)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 8.7E-20 3E-24 111.2 5.9 59 30-88 12-74 (109)
20 2o37_A Protein SIS1; HSP40, J- 99.8 1.1E-19 3.8E-24 107.9 6.1 55 31-88 6-60 (92)
21 2qwo_B Putative tyrosine-prote 99.8 1.5E-20 5E-25 112.1 2.2 56 33-88 33-91 (92)
22 3apq_A DNAJ homolog subfamily 99.8 2.9E-19 1E-23 117.9 5.6 56 33-88 2-57 (210)
23 2l6l_A DNAJ homolog subfamily 99.8 1.1E-18 3.8E-23 112.0 7.2 60 29-88 6-71 (155)
24 3ag7_A Putative uncharacterize 99.7 2.4E-19 8.1E-24 109.3 2.2 58 31-89 39-103 (106)
25 1gh6_A Large T antigen; tumor 99.7 2.9E-19 9.9E-24 110.1 1.4 54 31-88 6-61 (114)
26 3hho_A CO-chaperone protein HS 99.7 2.3E-18 7.9E-23 112.7 5.8 59 31-89 2-67 (174)
27 1n4c_A Auxilin; four helix bun 99.7 1.4E-18 4.7E-23 114.5 3.4 57 32-88 116-175 (182)
28 1fpo_A HSC20, chaperone protei 99.7 9.5E-18 3.2E-22 109.5 5.8 57 33-89 1-64 (171)
29 3lz8_A Putative chaperone DNAJ 99.7 8E-19 2.8E-23 124.4 0.0 61 28-89 23-83 (329)
30 3bvo_A CO-chaperone protein HS 99.7 2.4E-17 8.1E-22 110.5 6.8 60 30-89 40-106 (207)
31 2pf4_E Small T antigen; PP2A, 99.7 1.9E-18 6.4E-23 113.2 -0.1 55 30-88 8-64 (174)
32 3uo3_A J-type CO-chaperone JAC 99.6 1.6E-16 5.6E-21 104.5 3.4 59 28-89 6-71 (181)
33 3apo_A DNAJ homolog subfamily 99.6 5.5E-17 1.9E-21 123.5 1.1 61 28-88 16-76 (780)
34 2guz_B Mitochondrial import in 99.4 3.1E-13 1.1E-17 75.6 4.8 52 32-87 3-57 (65)
35 2y4t_A DNAJ homolog subfamily 99.0 6.1E-10 2.1E-14 77.5 4.9 58 32-89 381-441 (450)
36 2pzi_A Probable serine/threoni 93.9 0.039 1.3E-06 41.4 3.2 47 31-85 627-675 (681)
37 1qqr_A Streptokinase domain B; 58.2 4.8 0.00016 24.9 1.6 30 36-65 35-64 (138)
38 2lxi_A RNA-binding protein 10; 44.6 18 0.00062 19.7 2.5 20 39-58 7-26 (91)
39 1ug2_A 2610100B20RIK gene prod 38.7 22 0.00074 20.6 2.2 37 30-66 52-89 (95)
40 1iqt_A AUF1, heterogeneous nuc 35.9 31 0.0011 17.4 2.6 19 39-57 5-23 (75)
41 3pru_C Phycobilisome 32.1 kDa 35.5 46 0.0016 20.9 3.5 28 39-66 9-40 (154)
42 3nph_B Phycobilisome 32.1 kDa 35.4 55 0.0019 20.4 3.9 28 39-66 4-35 (148)
43 2ket_A Cathelicidin-6; antimic 33.9 33 0.0011 14.8 2.7 18 48-65 4-21 (27)
44 2gsv_A Hypothetical protein YV 31.4 67 0.0023 17.5 4.4 40 48-87 28-67 (80)
45 1vq8_S 50S ribosomal protein L 30.3 35 0.0012 19.2 2.2 21 38-58 26-46 (85)
46 2dw3_A Intrinsic membrane prot 30.1 69 0.0024 17.7 3.3 37 7-43 35-72 (77)
47 2hzc_A Splicing factor U2AF 65 29.6 45 0.0015 17.3 2.6 20 39-58 12-31 (87)
48 3cxb_A Protein SIFA; SIFA, SKI 29.5 86 0.0029 22.0 4.4 31 51-81 44-74 (336)
49 2lr8_A CAsp8-associated protei 35.0 12 0.0004 20.5 0.0 33 33-65 36-68 (70)
50 2mss_A Protein (musashi1); RNA 28.2 38 0.0013 17.1 2.0 18 40-57 6-23 (75)
51 3r8s_T 50S ribosomal protein L 27.7 40 0.0014 19.2 2.2 21 38-58 31-51 (93)
52 2o70_A OHCU decarboxylase; URI 27.5 89 0.003 19.6 4.0 14 71-84 99-112 (174)
53 3fp5_A Acyl-COA binding protei 27.4 37 0.0013 19.8 2.0 36 44-81 70-105 (106)
54 2zjr_Q 50S ribosomal protein L 27.4 40 0.0014 19.3 2.1 21 38-58 26-46 (95)
55 1o7d_C Lysosomal alpha-mannosi 27.0 96 0.0033 18.6 4.0 35 49-83 2-39 (159)
56 3o7i_A OHCU decarboxylase; lya 26.4 1.1E+02 0.0037 19.6 4.3 14 71-84 120-133 (189)
57 3j21_T 50S ribosomal protein L 26.2 45 0.0015 18.7 2.2 21 38-58 27-47 (86)
58 3nm9_A HMG-D, high mobility gr 25.1 76 0.0026 16.4 2.9 11 55-65 19-29 (73)
59 3tve_T 50S ribosomal protein L 24.8 49 0.0017 18.8 2.2 21 38-58 25-45 (92)
60 2cqh_A IGF-II mRNA-binding pro 24.4 62 0.0021 17.1 2.6 21 38-58 13-33 (93)
61 2div_A TRNA selenocysteine ass 24.2 62 0.0021 17.2 2.6 21 38-58 14-34 (99)
62 4fxv_A ELAV-like protein 1; RN 24.1 48 0.0016 18.2 2.0 20 38-57 24-43 (99)
63 2dnp_A RNA-binding protein 14; 24.0 71 0.0024 16.7 2.7 20 38-57 14-33 (90)
64 1mdy_A Protein (MYOD BHLH doma 23.8 66 0.0023 17.1 2.5 16 73-88 21-36 (68)
65 2dhg_A TRNA selenocysteine ass 23.8 64 0.0022 17.4 2.6 19 38-56 14-32 (104)
66 4a3n_A Transcription factor SO 23.7 58 0.002 16.6 2.2 31 51-86 14-44 (71)
67 4fla_A Regulation of nuclear P 23.4 42 0.0014 20.8 1.8 20 70-89 68-87 (152)
68 2ql2_B Neurod1, neurogenic dif 23.2 51 0.0017 17.1 1.9 16 73-88 11-26 (60)
69 2i4r_A V-type ATP synthase sub 23.1 54 0.0018 18.8 2.1 31 30-60 18-51 (102)
70 2ytc_A PRE-mRNA-splicing facto 23.0 52 0.0018 17.0 2.0 20 38-57 17-36 (85)
71 2ov6_A V-type ATP synthase sub 23.0 35 0.0012 19.4 1.3 29 32-60 11-42 (101)
72 2hvz_A Splicing factor, argini 22.7 73 0.0025 17.1 2.7 18 40-57 7-24 (101)
73 4aj5_K Spindle and kinetochore 22.4 1.3E+02 0.0044 18.1 3.7 41 46-86 20-62 (123)
74 2e5j_A Methenyltetrahydrofolat 22.3 72 0.0025 17.0 2.6 21 38-58 24-44 (97)
75 2lkz_A RNA-binding protein 5; 22.1 42 0.0014 18.5 1.5 21 38-58 14-34 (95)
76 3k6g_D Telomeric repeat-bindin 22.1 66 0.0023 15.6 2.0 11 78-88 13-23 (42)
77 1r4v_A Hypothetical protein AQ 22.0 1.5E+02 0.005 18.9 4.2 21 50-70 138-158 (171)
78 2dgp_A Bruno-like 4, RNA bindi 22.0 79 0.0027 17.0 2.7 21 38-58 18-38 (106)
79 2j6y_A Phosphoserine phosphata 21.9 1.3E+02 0.0045 17.7 4.1 42 42-83 39-80 (111)
80 1x5s_A Cold-inducible RNA-bind 21.8 81 0.0028 16.9 2.7 20 38-57 17-36 (102)
81 1fj7_A Nucleolin RBD1, protein 21.7 79 0.0027 16.9 2.7 24 39-62 23-46 (101)
82 1uaw_A Mouse-musashi-1; RNP-ty 21.4 45 0.0016 16.8 1.5 18 40-57 7-24 (77)
83 2dgv_A HnRNP M, heterogeneous 21.3 60 0.002 17.0 2.0 20 38-57 13-32 (92)
84 2jvr_A Nucleolar protein 3; RN 21.1 78 0.0027 18.0 2.6 21 38-58 33-53 (111)
85 4a8x_A RNA-binding protein wit 21.0 61 0.0021 16.7 2.0 20 38-57 9-28 (88)
86 3bs9_A Nucleolysin TIA-1 isofo 20.9 68 0.0023 16.5 2.2 20 38-57 11-30 (87)
87 2o8i_A AGR_C_4230P, hypothetic 20.9 74 0.0025 19.8 2.6 15 70-84 94-108 (165)
88 1hry_A Human SRY; DNA, DNA-bin 20.9 1E+02 0.0034 15.9 3.2 18 51-68 16-33 (76)
89 3rh2_A Hypothetical TETR-like 20.8 1.4E+02 0.0049 17.7 4.2 43 43-88 170-212 (212)
90 2dgu_A Heterogeneous nuclear r 20.8 87 0.003 16.9 2.7 20 38-57 16-35 (103)
91 2dgw_A Probable RNA-binding pr 20.7 68 0.0023 16.8 2.2 20 38-57 15-34 (91)
92 2dis_A Unnamed protein product 20.6 85 0.0029 17.0 2.7 21 38-58 13-33 (109)
93 2cqi_A Nucleolysin TIAR; RNA r 20.6 89 0.003 16.8 2.7 21 38-58 20-40 (103)
94 3md1_A Nuclear and cytoplasmic 20.5 71 0.0024 16.3 2.2 19 39-57 7-25 (83)
95 2cqn_A Formin-binding protein 20.4 1.2E+02 0.004 16.5 4.0 24 45-68 6-29 (77)
96 2juh_A Telomere binding protei 20.1 98 0.0033 18.4 2.9 45 43-87 52-98 (121)
97 3d2w_A TAR DNA-binding protein 20.1 72 0.0024 17.0 2.2 20 38-57 16-35 (89)
98 3ucg_A Polyadenylate-binding p 20.1 56 0.0019 17.0 1.7 19 39-57 12-30 (89)
99 3mdf_A Peptidyl-prolyl CIS-tra 20.0 56 0.0019 16.8 1.7 20 38-57 12-31 (85)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=114.47 Aligned_cols=60 Identities=47% Similarity=0.767 Sum_probs=56.4
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.....|+|+||||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|+|
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 62 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999999999999999998767789999999999999997
No 2
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=114.02 Aligned_cols=60 Identities=43% Similarity=0.674 Sum_probs=56.1
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
+....|+|+||||+++++.++||++||++++++|||++++ +.+.+.|+.|++||++|+|.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~ 62 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDA 62 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCH
Confidence 4567899999999999999999999999999999999986 78999999999999999984
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=111.51 Aligned_cols=59 Identities=37% Similarity=0.649 Sum_probs=55.6
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.....|+|+||||+++++.++||++|+++++++|||+++. +.+.+.|+.|++||++|+|
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d 61 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSN 61 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999999986 7789999999999999997
No 4
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=116.61 Aligned_cols=61 Identities=51% Similarity=0.775 Sum_probs=57.5
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
......++|+||||+++++.++||++||++++++|||++++++.+.+.|+.|++||++|+|
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d 72 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGS 72 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 5677889999999999999999999999999999999998777899999999999999997
No 5
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=114.90 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=53.4
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...|+|+||||+++++.++||++||++++++|||++++ +.+.+.|+.|++||++|+|
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d 81 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLK 81 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCC
Confidence 45899999999999999999999999999999999976 6688999999999999986
No 6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.84 E-value=4.6e-21 Score=110.38 Aligned_cols=56 Identities=45% Similarity=0.748 Sum_probs=52.8
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
+.|+|+||||+++++.++||++|+++++++|||++++ +.+.+.|+.|++||++|+|
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d 57 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSD 57 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCC
Confidence 4799999999999999999999999999999999986 5688999999999999997
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=110.06 Aligned_cols=61 Identities=39% Similarity=0.705 Sum_probs=55.6
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhCC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.....|+|+||||+++++.++||++||++++++|||++++. +.+.+.|+.|++||++|+|.
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~ 66 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA 66 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCH
Confidence 44568999999999999999999999999999999999875 46889999999999999984
No 8
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=9.6e-21 Score=115.72 Aligned_cols=61 Identities=39% Similarity=0.586 Sum_probs=57.2
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
......++|+||||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|+|
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d 72 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 3556789999999999999999999999999999999998778899999999999999997
No 9
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=2.6e-21 Score=114.50 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=56.0
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d 88 (89)
......++|+||||+++++.++||++||++++++|||+++++ +.+++.|+.|++||++|+|
T Consensus 11 ~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 455678999999999999999999999999999999999876 4689999999999999986
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.5e-21 Score=116.40 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=56.2
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.....|+|+||||+++++.++||++||++++++|||++++++.+.+.|+.|++||++|+|
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d 75 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN 75 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 355689999999999999999999999999999999998767899999999999999997
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.4e-20 Score=111.00 Aligned_cols=59 Identities=39% Similarity=0.649 Sum_probs=54.8
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.....|+|+||||+++++.++||++||++++++|||++++ +.+.+.|+.|++||++|+|
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d 71 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSN 71 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCC
Confidence 3456899999999999999999999999999999999986 6689999999999999997
No 12
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.83 E-value=1.1e-20 Score=112.33 Aligned_cols=62 Identities=35% Similarity=0.605 Sum_probs=55.9
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc------HHHHHHHHHHHHHHHHhhCC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS------EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~~L~d~ 89 (89)
......|+|+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+|.
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~ 78 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCH
Confidence 345678999999999999999999999999999999998742 56899999999999999984
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=110.79 Aligned_cols=60 Identities=43% Similarity=0.715 Sum_probs=55.2
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d 88 (89)
.....|+|+||||+++++.++||++||++++++|||++++. +.+++.|+.|++||++|+|
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d 65 (92)
T 2dmx_A 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65 (92)
T ss_dssp CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence 44568999999999999999999999999999999998764 5789999999999999997
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.81 E-value=3.8e-20 Score=105.63 Aligned_cols=55 Identities=40% Similarity=0.772 Sum_probs=51.3
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...++|+||||+++++.++||++|+++++++|||++++. .+.|+.|++||++|+|
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d 60 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSD 60 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCC
Confidence 457999999999999999999999999999999999863 6899999999999997
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=110.77 Aligned_cols=56 Identities=45% Similarity=0.744 Sum_probs=52.7
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc-HHHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d 88 (89)
.|+|+||||+++++.++||++||++++++|||++++. +.+.+.|+.|++||++|+|
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d 58 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSD 58 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence 5899999999999999999999999999999998864 5689999999999999997
No 16
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.80 E-value=1.7e-20 Score=108.94 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=51.0
Q ss_pred CcccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 30 QAKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
....++|+||||+++ ++.++||++||++++++|||++++ .+.|++|++||++|+|
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~ 64 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKT 64 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhh
Confidence 345789999999999 999999999999999999999876 6899999999999986
No 17
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4e-20 Score=105.33 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=52.1
Q ss_pred cccCcccChhhhhccCC-CCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 27 YSSQAKVNYYSHLQVGS-EATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 27 ~~~~~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
....+..++|+||||++ +++.++||++||++++++|||++++ .+.|+.|++||++|+|
T Consensus 8 ~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~ 66 (71)
T 2guz_A 8 DPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEK 66 (71)
T ss_dssp CSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhh
Confidence 34556689999999999 7999999999999999999999765 5799999999999986
No 18
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.80 E-value=1e-20 Score=114.47 Aligned_cols=58 Identities=47% Similarity=0.785 Sum_probs=54.2
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..|+|+||||+++++.++||++||++++++|||++++.+.+++.|+.|++||++|+|.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~ 59 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence 4789999999999999999999999999999999986667899999999999999973
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=8.7e-20 Score=111.24 Aligned_cols=59 Identities=32% Similarity=0.516 Sum_probs=54.8
Q ss_pred CcccChhhhhccCCCC-CHHHHHHHHHHHHHhhCCCCCCC---cHHHHHHHHHHHHHHHHhhC
Q psy3538 30 QAKVNYYSHLQVGSEA-TQNEIKASYYRLSKLYHPDKNKG---SEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a-~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d 88 (89)
....|+|+||||++++ +.++||++||++++++|||++++ .+.+.+.|+.|++||++|+|
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d 74 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCC
Confidence 4568999999999999 99999999999999999999986 36789999999999999997
No 20
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-19 Score=107.91 Aligned_cols=55 Identities=36% Similarity=0.700 Sum_probs=51.1
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...|+|+||||+++++.++||++||++++++|||+++++ .+.|+.|++||++|+|
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d 60 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILND 60 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCC
Confidence 457999999999999999999999999999999999763 5699999999999997
No 21
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.79 E-value=1.5e-20 Score=112.08 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=51.7
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d 88 (89)
.++|++|||+++++.++||++||++++++|||++++++ .+++.|+.|++||++|++
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987643 488999999999999975
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=2.9e-19 Score=117.92 Aligned_cols=56 Identities=39% Similarity=0.616 Sum_probs=53.6
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
.|+|+||||+++++.++||++||++++++|||++++.+++.+.|+.|++||++|+|
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~ 57 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 57 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999999999999998777899999999999999997
No 23
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=111.98 Aligned_cols=60 Identities=35% Similarity=0.633 Sum_probs=54.4
Q ss_pred cCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc------HHHHHHHHHHHHHHHHhhC
Q psy3538 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS------EAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 29 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~~L~d 88 (89)
.....|+|+||||+++++.++||++||++++++|||++++. +.+.+.|+.|++||++|+|
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~d 71 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC
Confidence 45568999999999999999999999999999999998764 2478999999999999997
No 24
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.75 E-value=2.4e-19 Score=109.28 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=51.0
Q ss_pred cccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCC---c----HHHHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG---S----EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~----~~~~~~f~~i~~Ay~~L~d~ 89 (89)
...+||+|||++. ++.++||++||++++++||||+++ + ..++++|+.|++||++|+|.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~ 103 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCc
Confidence 3479999999996 999999999999999999999753 1 24789999999999999983
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.74 E-value=2.9e-19 Score=110.14 Aligned_cols=54 Identities=19% Similarity=0.398 Sum_probs=50.5
Q ss_pred cccChhhhhccCCCCCH--HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 31 AKVNYYSHLQVGSEATQ--NEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...++|+||||+++++. ++||++||++++++|||++++ .+.|+.|++||++|+|
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d 61 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 61 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHH
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCC
Confidence 45789999999999998 999999999999999999886 6899999999999986
No 26
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.74 E-value=2.3e-18 Score=112.68 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=51.8
Q ss_pred cccChhhhhccCCCCC--HHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhCC
Q psy3538 31 AKVNYYSHLQVGSEAT--QNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~ 89 (89)
...|||+||||+++++ .++||++||++++++|||++++.+ .+.+.|+.|++||++|+|.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 67 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDP 67 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 3579999999999887 999999999999999999987642 2779999999999999983
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.73 E-value=1.4e-18 Score=114.51 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=52.4
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcH---HHHHHHHHHHHHHHHhhC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVLGE 88 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d 88 (89)
+.++|++|||+++++.++||++||++++++|||++++.+ .+++.|+.|++||++|+|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD 175 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC
Confidence 369999999999999999999999999999999987643 288999999999999987
No 28
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.71 E-value=9.5e-18 Score=109.52 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=51.2
Q ss_pred cChhhhhccCCCC--CHHHHHHHHHHHHHhhCCCCCCCcH-----HHHHHHHHHHHHHHHhhCC
Q psy3538 33 VNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSE-----AAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 33 ~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~ 89 (89)
.|||+||||++++ +.++||++||++++++|||++++.+ .+.+.|+.|++||++|+|.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp 64 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHP 64 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3799999999998 9999999999999999999987642 3678999999999999983
No 29
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.70 E-value=8e-19 Score=124.39 Aligned_cols=61 Identities=34% Similarity=0.592 Sum_probs=0.0
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
+.+...|||+||||+++++.++||+|||++++++|||++++ +.++++|++|++||++|+|.
T Consensus 23 ~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~ 83 (329)
T 3lz8_A 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDE 83 (329)
T ss_dssp --------------------------------------------------------------
T ss_pred ccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhh
Confidence 34556899999999999999999999999999999999986 57899999999999999983
No 30
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=110.51 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=52.6
Q ss_pred CcccChhhhhccCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-----HHHHHHHHHHHHHHHHhhCC
Q psy3538 30 QAKVNYYSHLQVGSE--ATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~ 89 (89)
....|||+||||+++ ++.++||++||++++++|||++++. ..+.+.|+.|++||++|+|.
T Consensus 40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 346899999999986 7899999999999999999998753 23678999999999999983
No 31
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.69 E-value=1.9e-18 Score=113.21 Aligned_cols=55 Identities=18% Similarity=0.396 Sum_probs=47.9
Q ss_pred CcccChhhhhccCCCCC--HHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 30 QAKVNYYSHLQVGSEAT--QNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 30 ~~~~~~y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
....++|+||||+++++ .++||+|||++++++|||++++ ++.|+.|++||++|+|
T Consensus 8 ~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsd 64 (174)
T 2pf4_E 8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 64 (174)
T ss_dssp HHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHH
T ss_pred cccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCC
Confidence 34579999999999998 6999999999999999999886 5899999999999997
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.62 E-value=1.6e-16 Score=104.53 Aligned_cols=59 Identities=17% Similarity=0.349 Sum_probs=51.8
Q ss_pred ccCcccChhhhh------ccCC-CCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhCC
Q psy3538 28 SSQAKVNYYSHL------QVGS-EATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 28 ~~~~~~~~y~iL------gv~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 89 (89)
+.....|||+|| |+++ +++.++||++||++++++|||++++ +.+.|+.|++||++|+|.
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp 71 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDP 71 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcCh
Confidence 345668999999 4665 8999999999999999999999986 678999999999999983
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.62 E-value=5.5e-17 Score=123.51 Aligned_cols=61 Identities=36% Similarity=0.575 Sum_probs=30.6
Q ss_pred ccCcccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 28 ~~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
......|+|+||||+++++.++||++||++++++|||++++++.+.+.|+.|++||++|+|
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~ 76 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 76 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHS
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcC
Confidence 4566789999999999999999999999999999999998778899999999999999997
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.1e-13 Score=75.61 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=46.3
Q ss_pred ccChhhhhccCCC---CCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 32 KVNYYSHLQVGSE---ATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 32 ~~~~y~iLgv~~~---a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
..++|.||||+++ ++.++|+++||+|...+|||++++ ......|++|.+.|.
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHH
Confidence 4578999999999 999999999999999999999886 677778899998874
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.96 E-value=6.1e-10 Score=77.52 Aligned_cols=58 Identities=40% Similarity=0.579 Sum_probs=52.8
Q ss_pred ccChhhhhccCCCCCHHHHHHHHHHHHHhhCCCCCCCc---HHHHHHHHHHHHHHHHhhCC
Q psy3538 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 32 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~ 89 (89)
..++|.+||+...++.++|+++|+++++++|||+.+++ +.+++.|+.|.+||++|+|.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 34899999999999999999999999999999998874 35899999999999999984
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.91 E-value=0.039 Score=41.42 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=36.1
Q ss_pred cccChhhhhccCCCCCH--HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHH
Q psy3538 31 AKVNYYSHLQVGSEATQ--NEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEV 85 (89)
Q Consensus 31 ~~~~~y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~ 85 (89)
...++|.+||++.+... .+|+++||++++..+++ .+++..+..|+.+
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 34559999999766554 67999999999966553 4778888888765
No 37
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=58.22 E-value=4.8 Score=24.95 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=26.4
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHhhCCCC
Q psy3538 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDK 65 (89)
Q Consensus 36 y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk 65 (89)
+..+.|....+.+|++++=..+..+.|||-
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 566777888899999999999999999984
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=44.59 E-value=18 Score=19.65 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=17.6
Q ss_pred hccCCCCCHHHHHHHHHHHH
Q psy3538 39 LQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l~ 58 (89)
=||+.+++.++|+..|.+.-
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38999999999999998874
No 39
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=38.75 E-value=22 Score=20.57 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=25.5
Q ss_pred CcccChhhhhccCC-CCCHHHHHHHHHHHHHhhCCCCC
Q psy3538 30 QAKVNYYSHLQVGS-EATQNEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 30 ~~~~~~y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPDk~ 66 (89)
+...+.|..+--.- +-++.+|+.+|++|++.+|-.+.
T Consensus 52 G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 52 GAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp TSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred CCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhc
Confidence 34455555543332 56889999999999999886654
No 40
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=35.89 E-value=31 Score=17.41 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=16.6
Q ss_pred hccCCCCCHHHHHHHHHHH
Q psy3538 39 LQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l 57 (89)
=||+.+++.++|+..|.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3788999999999999876
No 41
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=35.46 E-value=46 Score=20.90 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=19.5
Q ss_pred hccCCCCCH----HHHHHHHHHHHHhhCCCCC
Q psy3538 39 LQVGSEATQ----NEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 39 Lgv~~~a~~----~~Ik~ayr~l~~~~HPDk~ 66 (89)
+.+.++.+. .-|+++||+..-+.|+=..
T Consensus 9 ~e~~p~~s~~~~~~vI~AaYRQVfgn~~~~~s 40 (154)
T 3pru_C 9 VELRPDFSLDDAKMVIRAVYRQVLGNDYIMDS 40 (154)
T ss_dssp SBCCTTCCHHHHHHHHHHHHHHHTTSCCCCGG
T ss_pred eeecCCCCHHHHHHHHHHHHHHHhCCcccccc
Confidence 345555554 4499999999988886543
No 42
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=35.38 E-value=55 Score=20.40 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=18.4
Q ss_pred hccCCCCC----HHHHHHHHHHHHHhhCCCCC
Q psy3538 39 LQVGSEAT----QNEIKASYYRLSKLYHPDKN 66 (89)
Q Consensus 39 Lgv~~~a~----~~~Ik~ayr~l~~~~HPDk~ 66 (89)
+++.++.+ ..-|+++||+..-+.|+=..
T Consensus 4 ~el~~~~s~~~~~~vI~AaYrQVfgn~~~~~s 35 (148)
T 3nph_B 4 LELRSRSTEEEVDAVILAVYRQVLGNDHLMSQ 35 (148)
T ss_dssp -CBCSSSCSHHHHHHHHHHHHHHHSCSCCCTT
T ss_pred ccccCCCCHHHHHHHHHHHHHHHhCCcccccc
Confidence 34445544 34599999999988775443
No 43
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=33.94 E-value=33 Score=14.77 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhCCCC
Q psy3538 48 NEIKASYYRLSKLYHPDK 65 (89)
Q Consensus 48 ~~Ik~ayr~l~~~~HPDk 65 (89)
+..++.|+++.++..|-.
T Consensus 4 krfrkkfkklfkklspvi 21 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVI 21 (27)
T ss_dssp HHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 456888888888888853
No 44
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=31.36 E-value=67 Score=17.48 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 48 NEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 48 ~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
..+..-||..+...-.|....+.....+++.+.+||+-.+
T Consensus 28 hAmNaYYrsVvstlvqDqltKNAvvlkRiqHLdEAY~KVk 67 (80)
T 2gsv_A 28 HAMNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVK 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567788999998989998877778999999999997653
No 45
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=30.33 E-value=35 Score=19.16 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=18.5
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
+|-|+++++..+||++-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999988764
No 46
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=30.08 E-value=69 Score=17.74 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhc-ccCcccChhhhhccCC
Q psy3538 7 NVCNLTWAVVKYHRFSTSALY-SSQAKVNYYSHLQVGS 43 (89)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~iLgv~~ 43 (89)
.++...|..+......-..+. .+...++||..+.|..
T Consensus 35 v~f~~~~~~lv~l~~iG~~LPE~Sr~aP~P~~~~~i~~ 72 (77)
T 2dw3_A 35 GVFFGTLLLIGFFRVVGRMLPIQENQAPAPNITGALEH 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTCSSCSSCCSSCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcccCCCCcchhHHhh
Confidence 345556655555544444444 5677788888877754
No 47
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=29.65 E-value=45 Score=17.29 Aligned_cols=20 Identities=5% Similarity=-0.054 Sum_probs=17.3
Q ss_pred hccCCCCCHHHHHHHHHHHH
Q psy3538 39 LQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l~ 58 (89)
=||+.+++.++|+..|.+..
T Consensus 12 ~nLp~~~t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 12 GNIPFGITEEAMMDFFNAQM 31 (87)
T ss_dssp ESCCTTCCHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHh
Confidence 37889999999999998873
No 48
>3cxb_A Protein SIFA; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Salmonella typhimurium} PDB: 3hw2_A
Probab=29.52 E-value=86 Score=22.04 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCCCCCCcHHHHHHHHHHHH
Q psy3538 51 KASYYRLSKLYHPDKNKGSEAAAKKFREITA 81 (89)
Q Consensus 51 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~ 81 (89)
-+|..-+...+||+.+++.+.....|.++.+
T Consensus 44 aEAl~CI~eLcHp~~~~TrE~v~~~F~~LK~ 74 (336)
T 3cxb_A 44 AKADRCLHEMLFAERAPTRERLTEIFFELKE 74 (336)
T ss_dssp HHHHHHHHHHHSSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3577788888999988876777777776654
No 49
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=34.99 E-value=12 Score=20.52 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=21.5
Q ss_pred cChhhhhccCCCCCHHHHHHHHHHHHHhhCCCC
Q psy3538 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDK 65 (89)
Q Consensus 33 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk 65 (89)
.+-|..|--.-+-++++|+.+|++|++.+|-.|
T Consensus 36 ~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 36 SKTFAYLAAKLDKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 344555443335677788888888888877654
No 50
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=28.25 E-value=38 Score=17.13 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=15.5
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy3538 40 QVGSEATQNEIKASYYRL 57 (89)
Q Consensus 40 gv~~~a~~~~Ik~ayr~l 57 (89)
||+++.+.++|+..|.+.
T Consensus 6 nlp~~~t~~~l~~~F~~~ 23 (75)
T 2mss_A 6 GLSVNTTVEDVKHYFEQF 23 (75)
T ss_dssp CCCSSCCHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHhc
Confidence 788999999999988764
No 51
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=27.66 E-value=40 Score=19.19 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=18.0
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
+|-|+++|+..+||+|-.++-
T Consensus 31 ~F~V~~~AnK~eIK~AVE~lf 51 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKLF 51 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHHS
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 478999999999999988763
No 52
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=27.53 E-value=89 Score=19.61 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy3538 71 AAAKKFREITAAYE 84 (89)
Q Consensus 71 ~~~~~f~~i~~Ay~ 84 (89)
...+.|..+|.+|+
T Consensus 99 ~~~~~l~~lN~~Y~ 112 (174)
T 2o70_A 99 AEIVHMYRLNSEYK 112 (174)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34578999999996
No 53
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=27.44 E-value=37 Score=19.80 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHH
Q psy3538 44 EATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITA 81 (89)
Q Consensus 44 ~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~ 81 (89)
+.+.++-++.|-.++...-|. .+.+++.+...+|..
T Consensus 70 gmS~eeA~~~YI~~v~~l~~~--~~~~~~~~~~~~le~ 105 (106)
T 3fp5_A 70 GTSKEVAYQKYVEKLLEILKK--ADTEESKKYIAEIEA 105 (106)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcc--cCcHHHHHHHHHHhc
Confidence 779999999999999999887 334777777777654
No 54
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=27.43 E-value=40 Score=19.27 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.9
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
+|.|+++++..|||++-.++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 788999999999999988774
No 55
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=27.00 E-value=96 Score=18.58 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCc---HHHHHHHHHHHHHH
Q psy3538 49 EIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAY 83 (89)
Q Consensus 49 ~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay 83 (89)
++.++.+.+.+..|-|-.++. ....+...++.+|.
T Consensus 2 ~L~~~~k~l~~~QhHDaItGts~~~V~~Dy~~rl~~~~ 39 (159)
T 1o7d_C 2 DSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGW 39 (159)
T ss_dssp CSHHHHHHHHHTTBTTTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCcccCCcCCccChHHHHHHHHHHHHHHH
Confidence 357889999999999997764 22334444444443
No 56
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=26.41 E-value=1.1e+02 Score=19.63 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy3538 71 AAAKKFREITAAYE 84 (89)
Q Consensus 71 ~~~~~f~~i~~Ay~ 84 (89)
...+.|..+|.+|+
T Consensus 120 ~e~~~L~~LN~~Ye 133 (189)
T 3o7i_A 120 RLAQALREGNARYE 133 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35678999999996
No 57
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.20 E-value=45 Score=18.73 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.2
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
+|-|++.++..+||++-.++-
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 478899999999999988774
No 58
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=25.11 E-value=76 Score=16.41 Aligned_cols=11 Identities=18% Similarity=-0.004 Sum_probs=4.4
Q ss_pred HHHHHhhCCCC
Q psy3538 55 YRLSKLYHPDK 65 (89)
Q Consensus 55 r~l~~~~HPDk 65 (89)
|..++.-||+.
T Consensus 19 r~~~~~~~p~~ 29 (73)
T 3nm9_A 19 RESIKRENPGI 29 (73)
T ss_dssp HHHHHHHSSSC
T ss_pred HHHHHHHCCCC
Confidence 33334444443
No 59
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=24.82 E-value=49 Score=18.78 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.1
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
+|-|++.++..+||+|-.++-
T Consensus 25 ~F~V~~~AnK~qIK~aVe~lf 45 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETAF 45 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 478999999999999988763
No 60
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.42 E-value=62 Score=17.07 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=17.2
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+.+++.++|+..|.+..
T Consensus 13 V~nLp~~~t~~~l~~~F~~~G 33 (93)
T 2cqh_A 13 IGNLSPAVTADDLRQLFGDRK 33 (93)
T ss_dssp EECCCTTCCHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHHcC
Confidence 458999999999999887653
No 61
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.21 E-value=62 Score=17.24 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=17.7
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+.+++.++|+..|.+..
T Consensus 14 V~nLp~~~t~~~l~~~F~~~G 34 (99)
T 2div_A 14 MGDLEPYMDENFISRAFATMG 34 (99)
T ss_dssp ECSCCTTCCHHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 458899999999999998754
No 62
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=24.05 E-value=48 Score=18.22 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.0
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 24 V~nLp~~~te~~L~~~F~~~ 43 (99)
T 4fxv_A 24 VNYLPQNMTQDELRSLFSSI 43 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44799999999999999765
No 63
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.95 E-value=71 Score=16.74 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.8
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 14 V~nlp~~~t~~~l~~~F~~~ 33 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFERR 33 (90)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHcC
Confidence 34789999999999998775
No 64
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=23.83 E-value=66 Score=17.11 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhC
Q psy3538 73 AKKFREITAAYEVLGE 88 (89)
Q Consensus 73 ~~~f~~i~~Ay~~L~d 88 (89)
-.+.+.|+.||+.|.+
T Consensus 21 R~R~~~iN~af~~LR~ 36 (68)
T 1mdy_A 21 RRRLSKVNEAFETLKR 36 (68)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577899999999875
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.75 E-value=64 Score=17.39 Aligned_cols=19 Identities=0% Similarity=0.043 Sum_probs=16.8
Q ss_pred hhccCCCCCHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYR 56 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~ 56 (89)
|=||+.+++.++|+..|.+
T Consensus 14 V~nLp~~~t~~~l~~~F~~ 32 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVK 32 (104)
T ss_dssp EECCCTTCCHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH
Confidence 4489999999999999988
No 66
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=23.69 E-value=58 Score=16.58 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHh
Q psy3538 51 KASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86 (89)
Q Consensus 51 k~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L 86 (89)
.+.+|..++.-||+... .+..+.|-+.|..|
T Consensus 14 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~l 44 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLHN-----AELSKMLGKSWKAL 44 (71)
T ss_dssp HHHHHHHHHTTCTTSCH-----HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcC
Confidence 44566667777777643 23444444444443
No 67
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.35 E-value=42 Score=20.82 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q psy3538 70 EAAAKKFREITAAYEVLGEF 89 (89)
Q Consensus 70 ~~~~~~f~~i~~Ay~~L~d~ 89 (89)
.++++..+.|++|+..|.+|
T Consensus 68 ~~~e~l~~~veeA~~~L~eY 87 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEY 87 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999999876
No 68
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=23.17 E-value=51 Score=17.06 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhC
Q psy3538 73 AKKFREITAAYEVLGE 88 (89)
Q Consensus 73 ~~~f~~i~~Ay~~L~d 88 (89)
-.+.+.|+.||+.|.+
T Consensus 11 R~R~~~iN~af~~LR~ 26 (60)
T 2ql2_B 11 RNRMHGLNAALDNLRK 26 (60)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578889999998864
No 69
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=23.06 E-value=54 Score=18.83 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=23.5
Q ss_pred CcccChhhhhccCC---CCCHHHHHHHHHHHHHh
Q psy3538 30 QAKVNYYSHLQVGS---EATQNEIKASYYRLSKL 60 (89)
Q Consensus 30 ~~~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~ 60 (89)
.....-|.+.|+.. ..+.+++++++++++..
T Consensus 18 ~Dtv~GFrLaGi~~~~~~~~~ee~~~~~~~l~~~ 51 (102)
T 2i4r_A 18 PDFTIGFMLAGISDIYEVTSDEEIVKAVEDVLKR 51 (102)
T ss_dssp HHHHHHHHHTTCCCEEECCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcccCCCCHHHHHHHHHHHhhC
Confidence 34456678888875 34788999999998874
No 70
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.98 E-value=52 Score=16.98 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=16.4
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+.+.++|+..|.+.
T Consensus 17 V~~l~~~~t~~~l~~~f~~~ 36 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFYQF 36 (85)
T ss_dssp EECCTTTSCHHHHHHHHHTT
T ss_pred EcCCCCCCCHHHHHHHHHhC
Confidence 34899999999999988654
No 71
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=22.97 E-value=35 Score=19.44 Aligned_cols=29 Identities=3% Similarity=-0.054 Sum_probs=21.2
Q ss_pred ccChhhhhccC---CCCCHHHHHHHHHHHHHh
Q psy3538 32 KVNYYSHLQVG---SEATQNEIKASYYRLSKL 60 (89)
Q Consensus 32 ~~~~y~iLgv~---~~a~~~~Ik~ayr~l~~~ 60 (89)
...-|.+.|+. +-.+.+++.++++++...
T Consensus 11 tv~GFrLaGi~~v~~v~~~ee~~~~~~~l~~~ 42 (101)
T 2ov6_A 11 FVTGFRLAGISKVYETPDIPATESAVRSVLED 42 (101)
T ss_dssp HHHHHHHHTCCEEEECCSTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEecCCHHHHHHHHHHHhhC
Confidence 34557777877 344778899999998874
No 72
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=22.70 E-value=73 Score=17.05 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=15.7
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy3538 40 QVGSEATQNEIKASYYRL 57 (89)
Q Consensus 40 gv~~~a~~~~Ik~ayr~l 57 (89)
||+.+++.++|+..|.+.
T Consensus 7 nLp~~~t~~~l~~~F~~~ 24 (101)
T 2hvz_A 7 NLGTGAGKGELERAFSYY 24 (101)
T ss_dssp CCCSSCSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 788899999999998775
No 73
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=22.37 E-value=1.3e+02 Score=18.14 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCC--cHHHHHHHHHHHHHHHHh
Q psy3538 46 TQNEIKASYYRLSKLYHPDKNKG--SEAAAKKFREITAAYEVL 86 (89)
Q Consensus 46 ~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~f~~i~~Ay~~L 86 (89)
|.+.|..+..--.+..|||..+. +-.-.+....|..=|.+|
T Consensus 20 DLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L 62 (123)
T 4aj5_K 20 DLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTL 62 (123)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHH
Confidence 45556666666677778877421 123455555555555554
No 74
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.29 E-value=72 Score=17.04 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.4
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+.+++.++|+..|.+..
T Consensus 24 V~nL~~~~t~~~l~~~F~~~G 44 (97)
T 2e5j_A 24 VGNLPRDARVSDLKRALRELG 44 (97)
T ss_dssp EECCCTTCCHHHHHHHHHHTT
T ss_pred EeCCCCcCcHHHHHHHHHhcC
Confidence 447899999999999988653
No 75
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=22.14 E-value=42 Score=18.54 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=17.4
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+++++.++|++.|.+..
T Consensus 14 V~nL~~~~tee~L~~~F~~~G 34 (95)
T 2lkz_A 14 LRNIAPHTVVDSIMTALSPYA 34 (95)
T ss_dssp EESCCTTCCHHHHHHHSTTTC
T ss_pred EeCCCCcCCHHHHHHHHHhhC
Confidence 338899999999999998653
No 76
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=22.12 E-value=66 Score=15.63 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=5.9
Q ss_pred HHHHHHHHhhC
Q psy3538 78 EITAAYEVLGE 88 (89)
Q Consensus 78 ~i~~Ay~~L~d 88 (89)
.+.+|+++||+
T Consensus 13 tLk~AFK~Ls~ 23 (42)
T 3k6g_D 13 TLKAAFKTLSG 23 (42)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 45555555554
No 77
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=22.04 E-value=1.5e+02 Score=18.90 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhCCCCCCCcH
Q psy3538 50 IKASYYRLSKLYHPDKNKGSE 70 (89)
Q Consensus 50 Ik~ayr~l~~~~HPDk~~~~~ 70 (89)
+-=++-+..+..|||+++..+
T Consensus 138 L~valARv~K~l~Pernp~~e 158 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSRE 158 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHH
T ss_pred HHHHHHHHHHHhCCCCCCCHH
Confidence 334566778899999888743
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=21.96 E-value=79 Score=17.04 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=17.7
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+.+++.++|+..|.+.-
T Consensus 18 V~nlp~~~t~~~l~~~F~~~G 38 (106)
T 2dgp_A 18 IGQIPRNLDEKDLKPLFEEFG 38 (106)
T ss_dssp EESCCTTCCHHHHHHHHHHHS
T ss_pred EeCCCCCCCHHHHHHHHHhcC
Confidence 348899999999999998863
No 79
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=21.86 E-value=1.3e+02 Score=17.71 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHH
Q psy3538 42 GSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAY 83 (89)
Q Consensus 42 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay 83 (89)
..+.++++|-.-.+.....+.|+-...--.+.+...++.-+|
T Consensus 39 ek~I~PEeiV~iHk~~i~~l~~~l~e~v~~s~d~L~Evm~gy 80 (111)
T 2j6y_A 39 EHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGY 80 (111)
T ss_dssp HTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999986432122344444444444
No 80
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.82 E-value=81 Score=16.86 Aligned_cols=20 Identities=0% Similarity=0.120 Sum_probs=17.4
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 17 v~nLp~~~t~~~l~~~f~~~ 36 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKY 36 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHhc
Confidence 44889999999999999876
No 81
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=21.71 E-value=79 Score=16.91 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=20.0
Q ss_pred hccCCCCCHHHHHHHHHHHHHhhC
Q psy3538 39 LQVGSEATQNEIKASYYRLSKLYH 62 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l~~~~H 62 (89)
=||+.+++.++|+..|.+......
T Consensus 23 ~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 23 GNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhCCcce
Confidence 389999999999999988765544
No 82
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.41 E-value=45 Score=16.80 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=15.2
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy3538 40 QVGSEATQNEIKASYYRL 57 (89)
Q Consensus 40 gv~~~a~~~~Ik~ayr~l 57 (89)
||+.+++.++|++.|.+.
T Consensus 7 nlp~~~t~~~l~~~F~~~ 24 (77)
T 1uaw_A 7 GLSWQTTQEGLREYFGQF 24 (77)
T ss_dssp SCCSSCCSHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 788899999999888764
No 83
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=21.29 E-value=60 Score=17.02 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=16.7
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 13 V~nlp~~~t~~~l~~~f~~~ 32 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFNEC 32 (92)
T ss_dssp ECSCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999998764
No 84
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=21.11 E-value=78 Score=18.01 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=18.2
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+.+++.++|+..|.+.-
T Consensus 33 VgnLp~~~te~dL~~~F~~~G 53 (111)
T 2jvr_A 33 MKNLPEGCSWQDLKDLARENS 53 (111)
T ss_dssp EECSSCCCCHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998876
No 85
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=21.02 E-value=61 Score=16.70 Aligned_cols=20 Identities=10% Similarity=0.115 Sum_probs=16.5
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 9 V~nlp~~~t~~~l~~~F~~~ 28 (88)
T 4a8x_A 9 IGRLTRNVTKDHIMEIFSTY 28 (88)
T ss_dssp EECCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 34789999999999988764
No 86
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=20.90 E-value=68 Score=16.51 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.4
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 11 v~nlp~~~t~~~l~~~F~~~ 30 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFAPF 30 (87)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34788999999999988754
No 87
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=20.89 E-value=74 Score=19.82 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy3538 70 EAAAKKFREITAAYE 84 (89)
Q Consensus 70 ~~~~~~f~~i~~Ay~ 84 (89)
+...+.|..+|.+|+
T Consensus 94 ~~~~~~l~~lN~~Ye 108 (165)
T 2o8i_A 94 PQEHARFTQLNSAYT 108 (165)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345688999999996
No 88
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=20.86 E-value=1e+02 Score=15.93 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhCCCCCCC
Q psy3538 51 KASYYRLSKLYHPDKNKG 68 (89)
Q Consensus 51 k~ayr~l~~~~HPDk~~~ 68 (89)
.+.+|..++.-||+....
T Consensus 16 ~~~~r~~~~~~~p~~~~~ 33 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS 33 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS
T ss_pred HHHHHHHHHHHCcCCCHH
Confidence 344566666678876543
No 89
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=20.84 E-value=1.4e+02 Score=17.68 Aligned_cols=43 Identities=5% Similarity=0.206 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHhhC
Q psy3538 43 SEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88 (89)
Q Consensus 43 ~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d 88 (89)
...+.+++......+.....|--. +...+.|..+.++|.-+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~~~~ 212 (212)
T 3rh2_A 170 ATISKASLYEGLLRVLMIFKAYST---PDSLANFDRLEQHFRSQSN 212 (212)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTBC---HHHHHHHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHHHHHHHHHccccC---HHHHHHHHHHHHHHhhccC
Confidence 345788888888888888877543 4578899999999988875
No 90
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=20.82 E-value=87 Score=16.89 Aligned_cols=20 Identities=5% Similarity=0.227 Sum_probs=16.9
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 16 V~nl~~~~t~~~l~~~F~~~ 35 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQF 35 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44889999999999988775
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.75 E-value=68 Score=16.82 Aligned_cols=20 Identities=10% Similarity=-0.042 Sum_probs=16.7
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 15 v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTS
T ss_pred EECCCCCCCHHHHHHHHhhC
Confidence 44899999999999888754
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.58 E-value=85 Score=17.00 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=17.9
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+.+.+.++|+..|.+..
T Consensus 13 V~nLp~~~t~~~l~~~f~~~G 33 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKVT 33 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHHS
T ss_pred EeCCCCcCCHHHHHHHHHHhc
Confidence 447899999999999998874
No 93
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.56 E-value=89 Score=16.76 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=17.8
Q ss_pred hhccCCCCCHHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRLS 58 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l~ 58 (89)
|=||+.+++.++|+..|.+.-
T Consensus 20 V~nlp~~~t~~~l~~~F~~~G 40 (103)
T 2cqi_A 20 VGNLSRDVTEVLILQLFSQIG 40 (103)
T ss_dssp EESCCTTCCHHHHHHHHHHHS
T ss_pred EeCCCccCCHHHHHHHHHhcC
Confidence 458999999999999998763
No 94
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=20.55 E-value=71 Score=16.28 Aligned_cols=19 Identities=0% Similarity=0.202 Sum_probs=15.7
Q ss_pred hccCCCCCHHHHHHHHHHH
Q psy3538 39 LQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l 57 (89)
=||+.+++.++|+..|.+.
T Consensus 7 ~nlp~~~t~~~l~~~f~~~ 25 (83)
T 3md1_A 7 GDLNVNVDDETLRNAFKDF 25 (83)
T ss_dssp ECCCTTCCHHHHHHHHTTS
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3788999999999988654
No 95
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.44 E-value=1.2e+02 Score=16.47 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCC
Q psy3538 45 ATQNEIKASYYRLSKLYHPDKNKG 68 (89)
Q Consensus 45 a~~~~Ik~ayr~l~~~~HPDk~~~ 68 (89)
.-...++..|+.+.+...|.....
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~ 29 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELD 29 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 345678889999999988766544
No 96
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.15 E-value=98 Score=18.45 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHH--hhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy3538 43 SEATQNEIKASYYRLSK--LYHPDKNKGSEAAAKKFREITAAYEVLG 87 (89)
Q Consensus 43 ~~a~~~~Ik~ayr~l~~--~~HPDk~~~~~~~~~~f~~i~~Ay~~L~ 87 (89)
++=+..+||..|+.+.+ ...|+...+.+..++....|.+|...++
T Consensus 52 ~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~g 98 (121)
T 2juh_A 52 DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWS 98 (121)
T ss_dssp SSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHc
Confidence 45578889999999887 3456664432222333444555555543
No 97
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=20.10 E-value=72 Score=17.02 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=16.5
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+++.++|+..|.+.
T Consensus 16 V~~Lp~~~te~~L~~~F~~~ 35 (89)
T 3d2w_A 16 VGRCTEDMTAEELQQFFCQY 35 (89)
T ss_dssp EESCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHhcc
Confidence 34789999999999988654
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=20.08 E-value=56 Score=16.97 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.9
Q ss_pred hccCCCCCHHHHHHHHHHH
Q psy3538 39 LQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 39 Lgv~~~a~~~~Ik~ayr~l 57 (89)
=||+.+++.++|+..|.+.
T Consensus 12 ~nlp~~~t~~~l~~~F~~~ 30 (89)
T 3ucg_A 12 GNVDYGATAEELEAHFHGC 30 (89)
T ss_dssp ESCCTTCCHHHHHHHHGGG
T ss_pred eCCCCCCCHHHHHHHHHhC
Confidence 4788999999999988764
No 99
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=20.01 E-value=56 Score=16.78 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=16.6
Q ss_pred hhccCCCCCHHHHHHHHHHH
Q psy3538 38 HLQVGSEATQNEIKASYYRL 57 (89)
Q Consensus 38 iLgv~~~a~~~~Ik~ayr~l 57 (89)
|=||+.+.+.++|+..|.+.
T Consensus 12 V~nl~~~~~~~~l~~~f~~~ 31 (85)
T 3mdf_A 12 VGGLAEEVDDKVLHAAFIPF 31 (85)
T ss_dssp EECCCTTCCHHHHHHHHGGG
T ss_pred EECCCCCCCHHHHHHHHhcc
Confidence 44889999999999988764
Done!