RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3538
(89 letters)
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 87.7 bits (218), Expect = 3e-22
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
AK +YY L V +A++ EIK +Y +L+K YHPD+N G + A +KF+EI AYEVL
Sbjct: 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVL 57
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 75.6 bits (187), Expect = 3e-20
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
+YY L V +A+ EIK +Y +L+ YHPDKN G AA +KF+EI AYEVL
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLS 54
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 75.3 bits (186), Expect = 5e-20
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
+YY L V +A+ EIK +Y +L+ YHPDKN A +KF+EI AYEVL
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 76.0 bits (188), Expect = 5e-18
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
AK +YY L V A+++EIK +Y +L+ YHPD+N G + A +KF+EI AYEVL
Sbjct: 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVL 57
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 68.8 bits (169), Expect = 2e-17
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
+YY L V +A+ +EIK +Y +L+ YHPDKN G E A +KF+EI AYEVL
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVL 55
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 74.3 bits (183), Expect = 2e-17
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+YY L V A+ EIK +Y +L++ HPD N E A +KF+EI+ AYEVL
Sbjct: 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVL 55
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 73.0 bits (180), Expect = 6e-17
Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
YY L V +A++ EIK +Y +L+K YHPD+NK + A +KF+EI AYEVL
Sbjct: 2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVL 52
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 70.5 bits (173), Expect = 5e-16
Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
AK +YY L V A+++EIK +Y +LSK YHPD NK E A +KF+EI+ AYEVL
Sbjct: 2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVL 56
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 70.3 bits (172), Expect = 7e-16
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+YY L V +AT+ EIK +Y +L++ YHPD NKG A ++F+EI+ AY+VL +
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSD 64
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 69.8 bits (171), Expect = 9e-16
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
AK +YY L V AT+ EIK +Y RL+K YHPD N G + A +KF+EI AYE+L +
Sbjct: 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 67.6 bits (165), Expect = 6e-15
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+YY+ L V A+ EIK +Y +L+ YHPDKN G A K+F+E++ AYEVL +
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD 56
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 67.1 bits (164), Expect = 1e-14
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
AK +YY L V ATQ EIK +Y RL++ YHPD NK E A +KF+EI AY+VL
Sbjct: 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPE-AEEKFKEINEAYQVL 55
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 65.1 bits (159), Expect = 4e-14
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
YY L V +A+Q+EIK +Y +LSK YHPD NK A +K++E+ AYE L +
Sbjct: 2 NNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSD 58
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 64.1 bits (156), Expect = 1e-13
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
K +YY L V A ++EIK +Y +L+ YHPDKN ++ A + F+E+ AYEVL
Sbjct: 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVL 56
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 63.9 bits (156), Expect = 1e-13
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAK-KFREITAAYEVLGE 88
+YY L V +A ++E+K +Y RL++ YHPD NK E A+ +F+EI AYEVL +
Sbjct: 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNK--EPGAEDRFKEINRAYEVLSD 57
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 63.6 bits (155), Expect = 1e-13
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
++Y L V S+A+ EIK +Y +L++ HPD N G AA ++F+ ++ A++VL +
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSD 64
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 62.3 bits (151), Expect = 4e-13
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+YY L V A EIK++Y +L+ YHPDKNKG++ + +KF+E T AYE+L
Sbjct: 5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEIL 57
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 61.7 bits (150), Expect = 7e-13
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
K +YY L V +A++ EIK SY +L+ YHPD+N G + A + F+E AYEVL
Sbjct: 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVL 57
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 61.7 bits (150), Expect = 8e-13
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
K +YY L V ATQ EIK +Y RL K +HPD++ + + A +KF+EI AYEVL
Sbjct: 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVL 58
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 61.1 bits (148), Expect = 9e-13
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
A +YY+ L V A+Q+EIK ++ +L++ YHPD NK S A +KF+EI AY VL +
Sbjct: 2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSD 58
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 61.0 bits (148), Expect = 1e-12
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
K +YY L V AT +EIK +Y + + YHPDKN G + A +KF+E AY+VL
Sbjct: 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 60.5 bits (147), Expect = 2e-12
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+ +YY L V +A+++EIK +Y +L+ YHPD+N + A +KF+E AYEVL +
Sbjct: 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRD 59
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 59.8 bits (145), Expect = 3e-12
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
A +YY L + A+ +EIK ++ +L+ YHPDKNKG++ A +KF+EI AY+VL
Sbjct: 2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVL 57
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 59.2 bits (143), Expect = 5e-12
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
K +YY L + A+++EIK +Y +++ YHPDKNKG++ A F+E T AYEVL +
Sbjct: 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLID 58
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 59.1 bits (142), Expect = 8e-12
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
K +YY L + +A + EIK ++ +L+K YHPD+NK + AA F EI A +VL
Sbjct: 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD-AASIFAEINEANDVL 54
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 56.8 bits (137), Expect = 4e-11
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+YY L + +A+ +IK +Y +L+ YHPDKNK + A +KF+EI+ AY VL +
Sbjct: 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-AEEKFKEISEAYAVLSD 59
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 56.2 bits (135), Expect = 6e-11
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+YY L V A+Q ++K +Y +L+K YHPD ++ A KKF+EI AAY+VL
Sbjct: 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVL 55
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 56.1 bits (135), Expect = 8e-11
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA-AAKKFREITAAYEVLGE 88
+YY L V A+Q +IK ++ L+K +HPD + G++A A +KF+EI+ AYEVL +
Sbjct: 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSD 59
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 56.1 bits (135), Expect = 8e-11
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
++YY L V A+ +EIK++Y +L+ YHPD+NK + AA+KF +I AY VL +
Sbjct: 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSD 56
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 55.2 bits (133), Expect = 1e-10
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
K +YY L V A + EIK +Y +L++ YHPD ++ E A +KF+EI+ AY VL +
Sbjct: 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSD 59
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 53.4 bits (128), Expect = 7e-10
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
K +YY L V A++ EI+ +Y +L+K YHPD NK + A K EI A +VL
Sbjct: 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEAADVL 56
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 52.9 bits (127), Expect = 9e-10
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
Y L + + T +EIK +Y +L+ +HPDK E KF+EI+ AYEVL
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE----KFKEISRAYEVL 77
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 52.0 bits (124), Expect = 2e-09
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+++YY L+V + Q IK SY +L+ YHPD+N G + A +KF+ I AY VL +
Sbjct: 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSD 58
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 51.7 bits (124), Expect = 3e-09
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+YY+ + V IK +Y RL++ YHPD +K +A A +F+E+ A+EVL +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA-RFKEVAEAWEVLSD 58
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 51.5 bits (123), Expect = 3e-09
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+K +YY L V A+ +E+K +Y +L++ YHPD NK +A KF+E+ AY+ L +
Sbjct: 2 SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAED-KFKEVKEAYDTLSD 58
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 50.6 bits (120), Expect = 5e-09
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
+YY L V A+ EIK +Y +L+ YHPD+N G + A +KF+EI AYE+L
Sbjct: 7 DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEIL 60
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 45.9 bits (108), Expect = 3e-07
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+Y L VG A EI Y++L++ Y+P K G+E KF++I AY++LG+
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNE-GFHKFKKINEAYQILGD 627
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 42.5 bits (101), Expect = 4e-06
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDK--NKG-----SEAAAKKFREITAAYEVL 86
Y L V EIK +Y +L +HPDK KG E A +K +EI AAYE++
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 36.1 bits (83), Expect = 0.001
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDK-----NKGSEAAAKKFREITAAYEVL 86
Y L + + ++ +IK Y LS +HPDK N+ +K++ IT AY +L
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLL 156
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 30.8 bits (70), Expect = 0.044
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 50 IKASYYRLSKLYHPDKNKGSEAAAKK 75
++ +Y R +HPDK G E K+
Sbjct: 24 MRKAYLRKCLEFHPDKG-GDEEKMKE 48
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 30.3 bits (69), Expect = 0.099
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 50 IKASYYRLSKLYHPDKNKGSEAAAKK 75
++ +Y R K YHPDK G E K+
Sbjct: 30 MRKAYLRKCKEYHPDKG-GDEEKMKR 54
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 28.5 bits (64), Expect = 0.28
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 50 IKASYYRLSKLYHPDKNKGSEAAAKK-----FREITAAYEVL 86
+K Y L + YHPD+ + A ++ E+ AY+ L
Sbjct: 20 LKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61
Score = 28.1 bits (63), Expect = 0.50
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDK--NKGS-----EAAAKKFREITAAYE 84
L V +A Q+ IK +Y +L HPDK KG E +K +EI AYE
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 26.3 bits (58), Expect = 2.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 45 ATQNEIKASYYRLSKLYHPDKNKGSEAAA 73
A QN + Y+ + ++YH D +G E A
Sbjct: 113 AAQNIERLGYWGVVEVYHGDGKRGLEKHA 141
>gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme
metabolism].
Length = 211
Score = 26.1 bits (58), Expect = 2.6
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 44 EATQNEIKASYYRLSKLYHPDKNKGSE---AAAKKFREITAAYEVL 86
A + + A R +K+ E A A+K R + Y V
Sbjct: 29 AALKGGVTAVQLR-------EKDLSDEEYLALAEKLRALCQKYGVP 67
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 26.0 bits (57), Expect = 3.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 25 ALYSSQAKVNYYSHLQVGSEATQNEIKA 52
A YS +AKVN LQ + T++ IKA
Sbjct: 280 AFYSEEAKVNESDDLQNSIKLTRDNIKA 307
>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase.
Length = 308
Score = 25.5 bits (56), Expect = 4.7
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 39 LQVGSEATQNEIKASYYRLSKLYHPDKNK 67
L+V AT ++K + ++ K Y+P + +
Sbjct: 18 LEVPDSATVADLKKAIHKRKKKYYPSRQR 46
>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
enzymes [General function prediction only].
Length = 382
Score = 25.5 bits (56), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 57 LSKLYHPDKNKGSEAAAKKFREITAAYEV 85
L+ L H D G+ A AKK +I Y V
Sbjct: 159 LALLTHVDGEYGNLADAKKVAKICREYGV 187
>gnl|CDD|216258 pfam01037, AsnC_trans_reg, AsnC family. The AsnC family is a
family of similar bacterial transcription regulatory
proteins.
Length = 73
Score = 24.4 bits (54), Expect = 5.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 70 EAAAKKFREITAAYEVLGEF 89
A E+ Y V G++
Sbjct: 15 AEALAAIPEVVECYRVTGDY 34
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 24.6 bits (54), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 42 GSEATQNEIKASYYRLSKLYHPDKNK 67
GSEA +K +Y + L P+K K
Sbjct: 118 GSEANDTVVKLVWYYNNALGRPEKKK 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.127 0.370
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,186,036
Number of extensions: 299826
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 55
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)