RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3538
(89 letters)
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 75.9 bits (187), Expect = 5e-20
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 22 STSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITA 81
S S S ++ Y L V S ATQ +IKA+YYR LYHPD+N GS AA++F I+
Sbjct: 6 SGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQ 65
Query: 82 AYEVLG 87
AY VLG
Sbjct: 66 AYVVLG 71
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 78.8 bits (195), Expect = 3e-19
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
++ +YY+ L V IK +Y RL++ YHPD +K ++A A KF+++ A+EVL
Sbjct: 23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA-KFKDLAEAWEVLK 81
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 71.9 bits (177), Expect = 2e-18
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
AK +YY L V A + EI+ +Y RL+ YHPD+N+G + A KF+EI AYEVL
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 71.1 bits (175), Expect = 2e-18
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
SS + +YY L V A+Q EIK +YY+L+K YHPD NK A +KF ++ AYEVL
Sbjct: 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVL 60
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 71.7 bits (176), Expect = 4e-18
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
S + + Y L + AT ++IK SY +L+ YHPDKN + AA KF+EI A+ +L
Sbjct: 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 68.6 bits (168), Expect = 5e-17
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 27 YSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
Y S+ +YY+ L ++ +I A + + HPDK+ + A + F+++ A E+L
Sbjct: 14 YRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEIL 73
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 67.3 bits (165), Expect = 9e-17
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG-SEAAAKKFREITAAYEVL 86
S NYY L V + A+ +IK +Y +L+ +HPDKN E A KKF+ ++ AYEVL
Sbjct: 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 69.5 bits (170), Expect = 2e-16
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+YS L V A+ EI+ ++ +L+ HPDKN + A F +I AYEVL
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 55
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 66.3 bits (162), Expect = 2e-16
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 19 HRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFR 77
H + S ++ + ++E K RL +HPDKN + + A + F+
Sbjct: 2 HHHHHHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFK 61
Query: 78 EITAAYEVL 86
+ L
Sbjct: 62 HLQNEINRL 70
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 66.1 bits (162), Expect = 2e-16
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 28 SSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAA-KKFREITAAYEVL 86
S V+YY L V +A+ IK +Y +L+ +HPDKN ++ A ++F+++ AYEVL
Sbjct: 4 GSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVL 63
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 67.9 bits (166), Expect = 2e-16
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG------SEAAAKKFREITAAYE 84
K ++YS L A +++K Y +L +YHPDK E +KF EI A++
Sbjct: 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67
Query: 85 VLG 87
+LG
Sbjct: 68 ILG 70
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 65.9 bits (161), Expect = 3e-16
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 29 SQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
S + Y L V A+Q +IK +Y +L++ +HPDKNK A +F +I+ AYE+L
Sbjct: 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEIL 69
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 65.8 bits (161), Expect = 5e-16
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 33 VNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
+YY L V A+ ++IK +Y R + +HPDKN + E A KKF+E+ AYEVL
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 64.9 bits (159), Expect = 7e-16
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 35 YYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
YY L + A+ EIK +Y R + YHPDKNK A +KF+EI AY+VL
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVL 55
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 64.6 bits (158), Expect = 1e-15
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+ +YY L V A+ ++K +Y RL+ +HPDKN A F+ I AY VL
Sbjct: 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE-AFKAIGTAYAVL 59
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 69.0 bits (168), Expect = 1e-15
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 17 KYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKF 76
+H +S + N+YS L V A+ EI+ ++ +L+ HPDKN + A F
Sbjct: 5 HHHHHHSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDF 64
Query: 77 REITAAYEVLGEF 89
+I AYEVL +
Sbjct: 65 LKINRAYEVLKDE 77
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 64.3 bits (157), Expect = 2e-15
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+ Y L V A + E+K Y + + YHPDK G +KF+EI+ A+E+L
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEIL 58
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 63.2 bits (154), Expect = 3e-15
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+ + + L V A+++E+ +Y +L+ L HPDK + + F+ + A L
Sbjct: 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTAL 79
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 63.1 bits (154), Expect = 4e-15
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+ +YY L V A++ +IK ++++L+ YHPDKNK +A A KFREI AYE L
Sbjct: 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEA-KFREIAEAYETL 59
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 62.3 bits (152), Expect = 6e-15
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+ YY L V +A+ NE+K +Y +++ +HPDKN A++F++I+ AYEVL
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVL 58
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 62.4 bits (152), Expect = 8e-15
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKG------SEAAAKKFREITAAYE 84
K ++YS L A +++K Y +L LYHPDK E +KF EI A++
Sbjct: 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 85 VLG 87
+LG
Sbjct: 74 ILG 76
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 62.0 bits (151), Expect = 2e-14
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 31 AKVNYYSHLQVGSEA-TQNEIKASYYRLSKLYHPDKNKG---SEAAAKKFREITAAYEVL 86
N Y L+V E + ++ +Y L++ +HPD+ K A ++FR I AYE L
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 57.6 bits (139), Expect = 4e-12
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 32 KVNYYSHLQVGSEATQN--EIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+ L + A N ++ +Y + K +HPDK E K +++ Y+ + +
Sbjct: 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMED 64
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 56.0 bits (135), Expect = 5e-12
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 32 KVNYYSHLQVGSEATQN--EIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
+ L + A N ++ +Y + K +HPDK E K +++ Y+ + +
Sbjct: 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMED 61
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 50.3 bits (120), Expect = 2e-09
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 32 KVNYYS--HLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYE 84
+NY+ L + E + + + + L K +HPD + A ++ +I AY+
Sbjct: 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQ 62
Query: 85 VL 86
L
Sbjct: 63 TL 64
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 49.6 bits (118), Expect = 4e-09
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 33 VNYYS--HLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAYEV 85
++Y++ L + + + L + YHPDK AA ++ I A++
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 86 L 86
L
Sbjct: 61 L 61
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 48.7 bits (115), Expect = 9e-09
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA---AAKKFREITAAYEVL 86
+ + + T ++K Y + + HPDK G A F E+ A+
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 173
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 49.3 bits (118), Expect = 1e-08
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 16 VKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE---AA 72
++ L K +YY L V A + EI +Y +L+ +HPD + E A
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424
Query: 73 AKKFREITAAYEVLG 87
KKF +I AA EVL
Sbjct: 425 EKKFIDIAAAKEVLS 439
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 44.9 bits (106), Expect = 4e-08
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 35 YYSHLQVGSEATQN--EIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGE 88
L++ + + ++ +Y + S L HPDK GS A +E+ + +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHA---LMQELNSLWGTFKT 64
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 46.1 bits (109), Expect = 9e-08
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 23 TSALYSSQAKVNYYSHLQVGSEAT-------QNEIKASYYRLSKLYHPDKNKGSEAAAKK 75
++AL + +Y Q+ ++ Y +L +HPD + +
Sbjct: 1 SNALVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSE---Q 57
Query: 76 FREITAAYEVL 86
+ AY L
Sbjct: 58 SSTLNQAYHTL 68
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 44.2 bits (104), Expect = 1e-07
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 36 YSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEA---AAKKFREITAAYEVL 86
+ + + T ++K Y + + HP K G A F E+ A+
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 42.7 bits (101), Expect = 3e-07
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 43 SEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVL 86
+ T+ ++K + ++ HPDK GS A K I A + L
Sbjct: 25 NTLTKKKLKEVHRKIMLANHPDKG-GSPFLATK---INEAKDFL 64
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 43.1 bits (101), Expect = 4e-07
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 13 WAVVKYH--RFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSE 70
W+ K R S L + + + + N ++ SY R + HPDK +
Sbjct: 18 WSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKG 77
Query: 71 A-------AAKKFREITAAYEVLGE 88
A A K F + A++
Sbjct: 78 ASANQKYMAEKVFELLQEAWDHFNT 102
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 41.3 bits (96), Expect = 6e-06
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 31 AKVNYYS--HLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-----EAAAKKFREITAAY 83
+Y+S +++ Y +L +L HPD + + K + AY
Sbjct: 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100
Query: 84 EVL 86
+ L
Sbjct: 101 KTL 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 6e-04
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 9/38 (23%)
Query: 47 QNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYE 84
+ +K L KLY D + A A I A E
Sbjct: 19 KQALKKLQASL-KLYADDS---APALA-----IKATME 47
>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH,
mosquito, detoxification, xenobiotics; HET: GTS; 2.50A
{Anopheles cracens} SCOP: a.45.1.1 c.47.1.5
Length = 218
Score = 27.6 bits (62), Expect = 0.49
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 17 KYHRFSTSALYSS----QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAA 72
Y + LY +A V+ H +G+ Y R+ Y P + G+
Sbjct: 77 AYGK--DENLYPKDFRSRAIVDQRLHFDLGT---------LYQRVVDYYFPTIHLGAHLD 125
Query: 73 AKKFREITAAYEVL 86
K ++ A
Sbjct: 126 QTKKAKLAEALGWF 139
>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST;
HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A*
3f6f_A 3gh6_A* 1jlv_A*
Length = 209
Score = 25.2 bits (56), Expect = 3.4
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 30 QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLGEF 89
+A +N + +G+ Y + Y+P + A + F++I AA+E L F
Sbjct: 91 RAVINQRLYFDMGT---------LYQSFANYYYPQVFAKAPADPEAFKKIEAAFEFLNTF 141
>1ov2_A Alpha-2-macroglobulin receptor-associated protein precursor;
helical protein; NMR {Homo sapiens} SCOP: a.13.1.1
Length = 99
Score = 24.6 bits (53), Expect = 4.0
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 3 PFRNNVCNLTWAVVKYHRFSTSALYSSQAKVNYYSHLQVGSEATQNEIKASYYRLSKLYH 62
FR N W + L ++ L++ Q + ++ +L KL
Sbjct: 19 EFRMEKLNQLWEKAQRLHLPPVRLAE------LHADLKI-----QERDELAWKKL-KLDG 66
Query: 63 PDKNKGSEAA-AKKFREITAAYEVLGEF 89
D++ EA + I A Y + G+
Sbjct: 67 LDEDGEKEARLIRNLNVILAKYGLDGKK 94
>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor
complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP:
a.45.1.1 c.47.1.5
Length = 209
Score = 24.1 bits (53), Expect = 6.9
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 13/68 (19%)
Query: 23 TSALYSS----QAKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFRE 78
LY +A VN + +G+ Y R + ++P A + ++
Sbjct: 79 DDKLYPKDPQKRAVVNQRLYFDMGT---------LYQRFADYHYPQIFAKQPANPENEKK 129
Query: 79 ITAAYEVL 86
+ A L
Sbjct: 130 MKDAVGFL 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.127 0.370
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,281,566
Number of extensions: 55935
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 43
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)