RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3538
         (89 letters)



>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
          {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 50.4 bits (120), Expect = 1e-10
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query: 31 AKVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEV 85
          AK +YY  L V   A + EI+ +Y RL+  YHPD+N+G + A  KF+EI  AYEV
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 55


>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 98

 Score = 47.6 bits (113), Expect = 2e-09
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS---EAAAKKFREITAAYEVL 86
            +  + +    T  ++K  Y +   + HPDK  G    + A   F E+  A+   
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89


>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
          (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 94

 Score = 45.1 bits (106), Expect = 2e-08
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 32 KVNYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKK------FREITAAYEV 85
          K ++YS L     A  +++K  Y +L  LYHPDK      A         F EI  A+++
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74

Query: 86 LG 87
          LG
Sbjct: 75 LG 76


>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 77

 Score = 41.6 bits (97), Expect = 4e-07
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEVLG 87
          +YY  L +   A+  EIK +Y R +  YHPDKNK    A +KF+EI  AY+VL 
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLS 56


>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
          {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 40.4 bits (94), Expect = 9e-07
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 34 NYYSHLQV--GSEATQNEIKASYYRLSKLYHPDKNKGSEAAAK-----KFREITAAYEVL 86
          +Y++   +    +     +   +  L + YHPDK      A +     +   I  A++ L
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61


>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 39.7 bits (92), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 34 NYYSHLQVGSEATQNEIKASYYRLSKLYHPDKNKGS-EAAAKKFREITAAYEVL 86
             S ++   +  ++E K    RL   +HPDKN  + + A + F+ +      L
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70


>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
          {Murine polyomavirus [TaxId: 10634]}
          Length = 79

 Score = 38.1 bits (88), Expect = 7e-06
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 28 SSQAKVNYYSHLQVGSEA--TQNEIKASYYRLSKLYHPDKNKGSEAAAKKFREITAAYEV 85
          S   K      L++  +       ++ +Y + S L HPDK      +    +E+ + +  
Sbjct: 6  SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----SHALMQELNSLWGT 61

Query: 86 L 86
           
Sbjct: 62 F 62


>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus
           (Magnaporthe grisea) [TaxId: 148305]}
          Length = 195

 Score = 22.8 bits (48), Expect = 8.0
 Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 8/74 (10%)

Query: 16  VKYHRFSTSALYSSQAKVNYYSHLQVGSE-ATQNEIKASYYRLSKLYHPDKNKGSEAA-- 72
             +  +   ++     +V   + + V     T      +  R + +     N G +    
Sbjct: 121 TMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKAR-AGVIEGSHNHGEDWGLA 179

Query: 73  ----AKKFREITAA 82
                 + R+  A 
Sbjct: 180 AVEMGVRRRDWAAG 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.127    0.370 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 309,712
Number of extensions: 10827
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 12
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)