Query psy3539
Match_columns 315
No_of_seqs 214 out of 879
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:15:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.2 7.3E-11 2.5E-15 104.0 10.7 113 199-315 75-193 (194)
2 3kf9_B MLCK2, myosin light cha 52.2 5.9 0.0002 22.0 1.2 12 72-83 3-14 (22)
3 1rpq_W Peptide E131; receptor- 35.0 12 0.00042 21.0 0.7 10 249-258 1-10 (26)
4 2y8t_A Apical membrane antigen 6.3 90 0.0031 29.9 -0.6 23 225-254 40-62 (432)
5 1w8k_A Apical membrane antigen 5.5 1.3E+02 0.0043 29.1 -0.2 22 226-254 36-57 (447)
6 2j5l_A Apical membrane antigen 5.3 1.4E+02 0.0048 29.6 0.0 30 224-260 97-126 (581)
7 2ofz_A Nucleocapsid protein; S 3.3 96 0.0033 25.0 -2.5 15 66-82 66-80 (138)
8 3hd4_A Nucleoprotein; beta pla 3.2 1E+02 0.0034 24.9 -2.5 15 66-82 61-75 (139)
9 1pp9_G Ubiquinol-cytochrome C 3.2 1.1E+03 0.037 16.9 3.4 23 284-306 57-79 (81)
10 1loi_A Cyclic 3',5'-AMP specif 3.0 1.9E+02 0.0064 16.1 -0.7 9 210-218 16-24 (26)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.20 E-value=7.3e-11 Score=104.05 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHhc-cccCCCccccccccccCCcccccccchhhHHHHHHHHHHHHhhchhhHHH-
Q psy3539 199 NVYVLLCACVFLWAWVNQYNSARILSEL-RKKRGLVVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAY- 276 (315)
Q Consensus 199 ~~~~~~g~~lF~~g~~~q~~~h~~La~L-Rk~~G~~~~~~y~iP~gglF~~VscPhY~~Eiliy~~~al~~~~~~~~~~- 276 (315)
.+..++|+++++.|......++.+|.+- +... ..++++++.+.|+|+++.+|||++|++.++|++++.+ |+..+.
T Consensus 75 ~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~--~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~-s~~~~~~ 151 (194)
T 4a2n_B 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAIL--EIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILS-NWVVLIF 151 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSC--CEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--CCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhc-cHHHHHH
Confidence 6678899999999999999999999653 3210 0134578999999999999999999999999999874 443332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccc---CCCCccccccCC
Q psy3539 277 -VFYWVISNQFETSLLNHWWYQSKFTRQ---YPASRKAFIPYL 315 (315)
Q Consensus 277 -~~~~v~~nl~~~A~~~h~wY~~kF~~~---Yp~~RkalIPfI 315 (315)
..+++.. +..++....++.+++|||+ |.++.+++||+|
T Consensus 152 ~~~~~~~~-~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 152 GIVAWAIL-YFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCcee
Confidence 2233333 3467777888889999755 455677999986
No 2
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=52.18 E-value=5.9 Score=22.00 Aligned_cols=12 Identities=25% Similarity=0.442 Sum_probs=10.0
Q ss_pred cchhhHHHHHHH
Q psy3539 72 RYFQHFYIFSSL 83 (315)
Q Consensus 72 ~wF~HFYv~~~~ 83 (315)
+|-+|||++..+
T Consensus 3 ~WkK~f~av~Aa 14 (22)
T 3kf9_B 3 RWKKNFIAVSAA 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 699999998664
No 3
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=34.97 E-value=12 Score=20.97 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=7.9
Q ss_pred cccchhhHHH
Q psy3539 249 VSSPHLFCEA 258 (315)
Q Consensus 249 VscPhY~~Ei 258 (315)
|.|||+..|.
T Consensus 1 vqcphfcyel 10 (26)
T 1rpq_W 1 VQCPHFCYEL 10 (26)
T ss_dssp CCCCTHHHHS
T ss_pred CCCCeeeeec
Confidence 5799998874
No 4
>2y8t_A Apical membrane antigen, putative; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8r_A* 2y8s_A* 2x2z_A*
Probab=6.31 E-value=90 Score=29.94 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=15.3
Q ss_pred hccccCCCccccccccccCCcccccccchh
Q psy3539 225 ELRKKRGLVVTYDHLLPTGGLFNFVSSPHL 254 (315)
Q Consensus 225 ~LRk~~G~~~~~~y~iP~gglF~~VscPhY 254 (315)
+|-++ |++.+++|+||.| +||+|
T Consensus 40 DlG~d-~evg~~~YRiP~G------kCPv~ 62 (432)
T 2y8t_A 40 DLGQD-KEVDGTLYREPAG------LCPIW 62 (432)
T ss_dssp CCCEE-EEETTEEEEECCC------SSCEE
T ss_pred EcCCc-ceecCccccccCC------CCCcc
Confidence 33343 4566779999976 57776
No 5
>1w8k_A Apical membrane antigen 1; plasmodium antigen, malaria vaccine candidate; 1.8A {Plasmodium vivax} PDB: 1w81_A 2j4w_D
Probab=5.47 E-value=1.3e+02 Score=29.05 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=14.5
Q ss_pred ccccCCCccccccccccCCcccccccchh
Q psy3539 226 LRKKRGLVVTYDHLLPTGGLFNFVSSPHL 254 (315)
Q Consensus 226 LRk~~G~~~~~~y~iP~gglF~~VscPhY 254 (315)
|-++ +++.+++|++|.| +||+|
T Consensus 36 LG~d-~evg~~~YRiP~G------kCPv~ 57 (447)
T 1w8k_A 36 LGED-AEVENAKYRIPAG------RCPVF 57 (447)
T ss_dssp CCEE-EESSSCEEEECCC------SSCEE
T ss_pred cCCc-ceecCcccccCCC------cCCcC
Confidence 3344 4566789999976 46654
No 6
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=5.28 E-value=1.4e+02 Score=29.59 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred HhccccCCCccccccccccCCcccccccchhhHHHHH
Q psy3539 224 SELRKKRGLVVTYDHLLPTGGLFNFVSSPHLFCEALI 260 (315)
Q Consensus 224 a~LRk~~G~~~~~~y~iP~gglF~~VscPhY~~Eili 260 (315)
-.|-++ +++.++.|++|.| +||+|===|++
T Consensus 97 VDLG~D-~evg~~~YRiP~G------kCPV~GK~I~l 126 (581)
T 2j5l_A 97 VDLGED-AEVAGTQYRLPSG------KCPVFGKGIII 126 (581)
T ss_dssp -------------------------------------
T ss_pred EEcCCc-ceecCcccccCCC------cCCcCCceEEe
Confidence 355555 5677889999966 68887544444
No 7
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding N-terminal domain, N protein, SARS-ORF9A, viral protein; 1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Probab=3.28 E-value=96 Score=25.02 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=11.2
Q ss_pred eeEecccchhhHHHHHH
Q psy3539 66 HLEVPKRYFQHFYIFSS 82 (315)
Q Consensus 66 ~~~VPk~wF~HFYv~~~ 82 (315)
..++|-+| |||.+|.
T Consensus 66 rk~l~prW--yFYYlGT 80 (138)
T 2ofz_A 66 MKELSPRW--YFYYLGT 80 (138)
T ss_dssp EEECCCEE--EEEETTC
T ss_pred eeeCCCce--EEEEeCC
Confidence 47899999 7886543
No 8
>3hd4_A Nucleoprotein; beta platform beta hairpin, golgi apparatus, nucleus, RNA-binding, transcription, transcriptio regulation, virion; 1.75A {Murine hepatitis virus}
Probab=3.19 E-value=1e+02 Score=24.94 Aligned_cols=15 Identities=20% Similarity=0.540 Sum_probs=11.2
Q ss_pred eeEecccchhhHHHHHH
Q psy3539 66 HLEVPKRYFQHFYIFSS 82 (315)
Q Consensus 66 ~~~VPk~wF~HFYv~~~ 82 (315)
..++|-+| |||.+|.
T Consensus 61 r~~l~prW--~FYY~GT 75 (139)
T 3hd4_A 61 QKQLLPRW--YFYYLGT 75 (139)
T ss_dssp EEECCCEE--EEEETTC
T ss_pred EeeCCCcE--EEEEecC
Confidence 46899999 7886543
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=3.17 E-value=1.1e+03 Score=16.88 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhccccCCC
Q psy3539 284 NQFETSLLNHWWYQSKFTRQYPA 306 (315)
Q Consensus 284 nl~~~A~~~h~wY~~kF~~~Yp~ 306 (315)
....||.+.+++..+|=++||-.
T Consensus 57 ~i~~Wa~~~~e~~~rKnp~d~~n 79 (81)
T 1pp9_G 57 LVYTWGTQEFEKSKRKNPAAYEN 79 (81)
T ss_dssp HHHHHHHHHHHHTTSSCC-----
T ss_pred HHHHHHHHHHHHHhCCCHHHhcc
Confidence 44678999999988888877743
No 10
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=3.04 E-value=1.9e+02 Score=16.10 Aligned_cols=9 Identities=33% Similarity=0.900 Sum_probs=4.6
Q ss_pred HHHHHHHHh
Q psy3539 210 LWAWVNQYN 218 (315)
Q Consensus 210 ~~g~~~q~~ 218 (315)
++|++.|++
T Consensus 16 lvgwwdqfk 24 (26)
T 1loi_A 16 LVGWWDQFK 24 (26)
T ss_dssp GGGGHHHHT
T ss_pred hhhhHHHhc
Confidence 345555553
Done!