Query psy3539
Match_columns 315
No_of_seqs 214 out of 879
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 19:15:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2epra1 g.37.1.1 (A:350-384) P 9.6 23 0.0017 20.1 -0.5 9 3-11 13-21 (35)
2 d3e46a1 a.5.2.1 (A:157-198) Ub 9.1 47 0.0034 19.3 0.7 11 249-259 1-11 (42)
3 d1q90r_ f.23.12.1 (R:) ISP sub 4.1 3.8E+02 0.028 15.3 3.9 25 6-31 2-27 (39)
4 d2b4va1 a.160.1.4 (A:289-471) 3.4 4.5E+02 0.033 18.8 3.8 44 128-171 30-91 (183)
5 d1vmba_ d.58.14.1 (A:) Ribosom 3.3 1.8E+02 0.013 19.9 1.2 13 140-152 2-14 (107)
6 d1rwza1 d.131.1.2 (A:1-122) Pr 3.0 1.4E+02 0.01 21.1 0.1 16 64-79 46-61 (122)
7 d1s95a_ d.159.1.3 (A:) Serine/ 2.9 1.7E+02 0.012 24.6 0.6 26 232-257 253-279 (324)
8 d2ifxa1 d.58.4.19 (A:1-108) Hy 2.8 94 0.0068 21.4 -1.0 10 67-76 81-90 (108)
9 d1oyia_ a.4.5.19 (A:) dsRNA-bi 2.8 1.2E+02 0.0088 18.7 -0.4 11 65-75 50-60 (62)
10 d1t95a3 d.58.11.3 (A:162-234) 2.6 3.7E+02 0.027 17.3 2.1 34 42-75 21-56 (73)
No 1
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.64 E-value=23 Score=20.05 Aligned_cols=9 Identities=78% Similarity=1.578 Sum_probs=6.2
Q ss_pred ccccccccc
Q psy3539 3 KVFRDVYHM 11 (315)
Q Consensus 3 ~~~~~~~~~ 11 (315)
|+|+||+++
T Consensus 13 k~frdvyhl 21 (35)
T d2epra1 13 KIFRDVYHL 21 (35)
T ss_dssp EEESSHHHH
T ss_pred HHHHHHHHH
Confidence 567777765
No 2
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.06 E-value=47 Score=19.25 Aligned_cols=11 Identities=36% Similarity=0.256 Sum_probs=8.8
Q ss_pred cccchhhHHHH
Q psy3539 249 VSSPHLFCEAL 259 (315)
Q Consensus 249 VscPhY~~Eil 259 (315)
||+|.|+..|=
T Consensus 1 vsspeyt~kid 11 (42)
T d3e46a1 1 VSSPEYTKKIE 11 (42)
T ss_dssp CCCHHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 68899998764
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.12 E-value=3.8e+02 Score=15.29 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=17.6
Q ss_pred cccccc-hHHHHHHHHHHHHHHHHHHH
Q psy3539 6 RDVYHM-DLNIIQATFLLLTLAIVIVG 31 (315)
Q Consensus 6 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 31 (315)
+||+.| --++++++.+..+.-- ..|
T Consensus 2 ~~VpDMgrR~~MNLll~G~~~~~-~~g 27 (39)
T d1q90r_ 2 SEVPDMNKRNIMNLILAGGAGLP-ITT 27 (39)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccchhHHHHHHHHHHhccchh-hhh
Confidence 578889 7888998886654433 444
No 4
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=3.37 E-value=4.5e+02 Score=18.77 Aligned_cols=44 Identities=5% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhheeeeecee------------------ccCCCCccHHHHHHHHHHHHHH
Q psy3539 128 FLCIFLITLQCYRRLYETSCVS------------------VFSDSRINISHYIIGHLHYFGT 171 (315)
Q Consensus 128 ~l~~~l~~iH~~rRl~Etlfv~------------------~fS~s~M~l~~~~~G~~fY~~~ 171 (315)
..++.++++|++++.-....+. ..+..+.++...+.|.+.|...
T Consensus 30 SYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~Ll~~FF~~Y~~ 91 (183)
T d2b4va1 30 SYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAH 91 (183)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHhccccccccccccccccCCCCCCHHHHHHHHHHHhcc
Confidence 4577888999998742111111 1122557888899998888774
No 5
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]}
Probab=3.34 E-value=1.8e+02 Score=19.93 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=10.1
Q ss_pred hheeeeeceeccC
Q psy3539 140 RRLYETSCVSVFS 152 (315)
Q Consensus 140 rRl~Etlfv~~fS 152 (315)
-|.||+.++.+..
T Consensus 2 ~R~YE~~~Il~p~ 14 (107)
T d1vmba_ 2 ERIYESMFIIAPN 14 (107)
T ss_dssp CEEEEEEEEECTT
T ss_pred CceeEEEEEECCC
Confidence 3889999988753
No 6
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.98 E-value=1.4e+02 Score=21.07 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.8
Q ss_pred eeeeEecccchhhHHH
Q psy3539 64 VAHLEVPKRYFQHFYI 79 (315)
Q Consensus 64 ~~~~~VPk~wF~HFYv 79 (315)
+-.+.+||.||.+|++
T Consensus 46 Lv~l~L~~~~F~~Y~~ 61 (122)
T d1rwza1 46 MVIVDIPKDSFEVYNI 61 (122)
T ss_dssp EEEEEEEGGGSSEEEE
T ss_pred EEEEEECcccCeEEec
Confidence 4578999999999985
No 7
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.90 E-value=1.7e+02 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.3
Q ss_pred CccccccccccCC-cccccccchhhHH
Q psy3539 232 LVVTYDHLLPTGG-LFNFVSSPHLFCE 257 (315)
Q Consensus 232 ~~~~~~y~iP~gg-lF~~VscPhY~~E 257 (315)
+...++|+...+| +...-|+|||.++
T Consensus 253 e~v~~G~~~~~~~kviTvFSa~nY~~~ 279 (324)
T d1s95a_ 253 EVKAEGYEVAHGGRCVTVFSAPNYCDQ 279 (324)
T ss_dssp SCCTTSEEEEGGGTEEEECCCSSGGGT
T ss_pred ccccCceEEecCCcEEEEeCCCccCCC
Confidence 4456778888765 8888899999864
No 8
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=2.78 E-value=94 Score=21.40 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=8.3
Q ss_pred eEecccchhh
Q psy3539 67 LEVPKRYFQH 76 (315)
Q Consensus 67 ~~VPk~wF~H 76 (315)
-++.|.||.|
T Consensus 81 sdirkawfeh 90 (108)
T d2ifxa1 81 SDIRKAWFEH 90 (108)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3688999998
No 9
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=2.78 E-value=1.2e+02 Score=18.67 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.0
Q ss_pred eeeEecccchh
Q psy3539 65 AHLEVPKRYFQ 75 (315)
Q Consensus 65 ~~~~VPk~wF~ 75 (315)
++=++|.|||.
T Consensus 50 ~s~d~pprw~~ 60 (62)
T d1oyia_ 50 SSDDIPPRWFM 60 (62)
T ss_dssp ECSSSSCEEES
T ss_pred cCCCCCCcccc
Confidence 34568999985
No 10
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.60 E-value=3.7e+02 Score=17.34 Aligned_cols=34 Identities=9% Similarity=0.431 Sum_probs=23.7
Q ss_pred hHhhHHHhhhCCCCCCC--CCccceeeeEecccchh
Q psy3539 42 PKCLIQSFRYGKFALDI--RHSTFVAHLEVPKRYFQ 75 (315)
Q Consensus 42 ~~~~~~l~~YGK~~~~~--~~~~~~~~~~VPk~wF~ 75 (315)
....+.+.+||+...+. ++.+|...+++|..==.
T Consensus 21 gka~~~l~~~g~i~kEeW~~DGSw~~vveiPaG~q~ 56 (73)
T d1t95a3 21 GRAISALYNFGGVTREEWQRDGSWICVMRIPSGMYG 56 (73)
T ss_dssp HHHHHHHHHHCCEEEEEECTTSCEEEEEEEEGGGHH
T ss_pred HHHHHHHHHhCcchhhcccCCCcEEEEEEecccchH
Confidence 44677888999875443 34468888999976533
Done!