RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3539
(315 letters)
>gnl|CDD|215610 PLN03164, PLN03164, 3-oxo-5-alpha-steroid 4-dehydrogenase,
C-terminal domain containing protein; Provisional.
Length = 323
Score = 94.9 bits (236), Expect = 2e-22
Identities = 79/287 (27%), Positives = 119/287 (41%), Gaps = 45/287 (15%)
Query: 69 VPKRYFQHFYIF-----SSLLSTMAFYLCVKTYVLGYEVSPSVMSFLDLLGGS----QRR 119
VP+R+F HFY+ + LL+ Y + E S ++ L GGS +
Sbjct: 41 VPQRFFSHFYVVGVVWTTLLLAATWLYAYKMAPLSSEEFQYSDIAS-QLAGGSHIFSFHK 99
Query: 120 ATTSA--------TSVFLCIFLITLQCYRRLYETSCVSVFSDS-RINISHYIIGHLHY-- 168
+ ++ SVFL + L+ + RRLYE+ V +S S R++I Y+ G Y
Sbjct: 100 SRSTPVEHRYRVWRSVFL-LLLMEIHVLRRLYESLYVFKYSPSARMHILGYLTGLFFYVA 158
Query: 169 --FGTVCGMLVEAPGFTR----------PSFEHRTSLDLKD-------LNVYVLLCACVF 209
C E F S D D L + + A +F
Sbjct: 159 APLSLCCNCAPEVAKFVGNQVAEFIVKGKSAMSAIEFDWWDFVSPLMKLGWFQWIGAAIF 218
Query: 210 LWAWVNQYNSARILSELRKKRGLVVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILY 269
LW W++QY IL LR+ + Y ++P G F VS PH E +IY L +
Sbjct: 219 LWGWIHQYRCHAILGSLREHKKQADEY--VIPYGDWFEMVSCPHYLAEIVIYAGLLIASG 276
Query: 270 NNN-TFAYVFYWVISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYL 315
+ T +F +V++N + H WY KF YP +R A IP++
Sbjct: 277 GTDLTIWLLFGFVVANLTFAAAETHRWYLQKF-ENYPRNRYAIIPFV 322
>gnl|CDD|217095 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydrogenase. This
family consists of 3-oxo-5-alpha-steroid
4-dehydrogenases, EC:1.3.99.5 Also known as Steroid
5-alpha-reductase, the reaction catalyzed by this enzyme
is: 3-oxo-5-alpha-steroid + acceptor <=>
3-oxo-delta(4)-steroid + reduced acceptor. The Steroid
5-alpha-reductase enzyme is responsible for the
formation of dihydrotestosterone, this hormone promotes
the differentiation of male external genitalia and the
prostate during fetal development. In humans mutations
in this enzyme can cause a form of male
pseudohermaphorditism in which the external genitalia
and prostate fail to develop normally. A related enzyme
is also found in plants is DET2, a steroid reductase
from Arabidopsis. Mutations in this enzyme cause defects
in light-regulated development.
Length = 150
Score = 66.3 bits (162), Expect = 2e-13
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 202 VLLCACVFLWAWVNQYNSARILSELRKKRGLVVTYDHLLPTGGLFNFVSSPHLFCEALIY 261
L+ +F+ + S IL LRK + +P GGLF VS P+ F E + +
Sbjct: 42 FLIGIGLFVTGMLINIKSDIILRTLRKPGN----TGYKIPRGGLFELVSCPNYFGEIMEW 97
Query: 262 LSLYLILYNNNTFAYVFYWVISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYL 315
+ L ++ A+ F+ + N + +H WY KF +YP SRKA IP++
Sbjct: 98 IGYALATWSLPALAFAFF-TVCNLTPRAKAHHKWYLKKF-EKYPKSRKALIPFV 149
>gnl|CDD|178015 PLN02392, PLN02392, probable steroid reductase DET2.
Length = 260
Score = 57.9 bits (140), Expect = 9e-10
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 208 VFLWA-WVNQYNSARILSELRKKRGLVVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYL 266
VFLW +N + S R+L L+++ G + +P GG F VS P+ F E + +L +
Sbjct: 158 VFLWGMRINVW-SDRVLVGLKREGG-----GYKVPRGGWFELVSCPNYFGEIVEWLGWAV 211
Query: 267 ILYNNNTFAYVFYWVISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYL 315
+ ++ F + Y SN + NH WY KF YP RKA IP+L
Sbjct: 212 MTWSWAGFGFFLY-TCSNLVPRACANHKWYLEKFGEDYPKGRKAVIPFL 259
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 35.7 bits (82), Expect = 0.025
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 18/65 (27%)
Query: 28 VIVGSLINSLEKHLPKCLIQSFRYGKFALDIR-------------HST-FVAHLEVPKRY 73
V+ S IN L K +P +++ +Y + A +R H T FV H+EV
Sbjct: 293 VLEDSYINKLSKDVPTLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFVTHMEV---- 348
Query: 74 FQHFY 78
+ H Y
Sbjct: 349 YVHLY 353
>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
A subgroup of AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
AraC regulators are defined by a AraC-type
helix-turn-helix DNA binding domain at their C-terminal.
AraC family transcriptional regulators are widespread
among bacteria and are involved in regulating diverse
and important biological functions, including carbon
metabolism, stress responses and virulence in different
microorganisms. The catalytic triad typical of GATase1
domains is not conserved in this GATase1-like domain.
However, in common with typical GATase1domains a
reactive cys residue is found in the sharp turn between
a beta strand and an alpha helix termed the nucleophile
elbow.
Length = 195
Score = 32.2 bits (74), Expect = 0.24
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 287 ETSLLN------HWWYQSKFTRQYPA 306
E LL+ HWW +F R++P
Sbjct: 119 EAGLLDGRRATTHWWLAPQFRRRFPK 144
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 31.6 bits (72), Expect = 0.61
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 147 CVSVFSDSRINISHYIIGHLHYFGTVCGMLV-EAPGFTRPSFEH 189
CV+V D+ + I+H I H T+ L+ +A GF P F H
Sbjct: 240 CVAV-DDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAH 282
>gnl|CDD|233538 TIGR01701, Fdhalpha-like, oxidoreductase alpha (molybdopterin)
subunit. This model represents a well-defined clade of
oxidoreductase alpha subunits most closely related to a
group of formate dehydrogenases including the E. coli
FdhH protein (TIGR01591). These alpha subunits contain a
molybdopterin cofactor and generally associate with two
other subunits which contain iron-sulfur clusters and
cytochromes. The particular subunits with which this
enzyme interacts and the substrate which is reduced is
unknown at this time. In Ralstonia, the gene is
associated with the cbb operon , but is not essential
for CO2 fixation.
Length = 743
Score = 31.3 bits (71), Expect = 0.83
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 205 CACVFLWAWVNQYNSARILSELR--KKRGLVVTYDHLLPTGGLFNFVS 250
C+ N R+L L KKRG + + L GL F
Sbjct: 199 TDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWI 246
>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase.
Length = 308
Score = 28.2 bits (63), Expect = 5.4
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 17/120 (14%)
Query: 140 RRLYETSCVSVFSDSRINISHYIIGHLHY--FGTVCGMLVEAPGFTRPSFEHRTSLDLKD 197
+R+ ET V FS + + + +Y FG V P +T S +
Sbjct: 142 KRILETFFVHRFSHATSPLFNVFRNCAYYWTFGAYIAYFVNHPLYTPVS----------E 191
Query: 198 LNVYVLLCACVFLWAWVNQYNSARILSELRKKRGLVVTYDHLLPTGGLFNFVSSPHLFCE 257
+ V L + + IL LRK G + +P G LFN+V+ + E
Sbjct: 192 TQMKV--GFGFGLVCQLANFYCHIILRNLRKPDG---KGGYQIPRGFLFNYVTCANYTTE 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.142 0.450
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,013,559
Number of extensions: 1529857
Number of successful extensions: 1980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 45
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.4 bits)