RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3539
         (315 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.9 bits (87), Expect = 0.004
 Identities = 51/340 (15%), Positives = 89/340 (26%), Gaps = 122/340 (35%)

Query: 2   LKVFRDVYHMDLNIIQATF------LLLTLAIVIVGSLINSLEKHLPKCLIQSFRYGKFA 55
           L V  +V   +     A F      LL T    +   L  +   H+              
Sbjct: 247 LLVLLNVQ--NAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHIS------------- 290

Query: 56  LDIRHSTFVAHLEVPKRYFQHFYIFSSLLSTMAFYLCVKTYVLGYEV---SPSVMSFLDL 112
           LD    T                    + S +  YL  +   L  EV   +P  +S   +
Sbjct: 291 LDHHSMTLTP---------------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---I 332

Query: 113 LGGSQRRATTSATSVFLCIFLITLQCYRRLYETSCVSVFSDSRINISHYIIGHLHYFGTV 172
           +  S R              L T   ++         V  D    I    +  L      
Sbjct: 333 IAESIRD------------GLATWDNWKH--------VNCDKLTTIIESSLNVLE----- 367

Query: 173 CGMLVEAPGFTRPSFEHRTSLDL----KDLNV-YVLLCACVFLWAWVNQYNSARILSELR 227
                  P   R  F+      L       ++  +LL     +W  V + +   ++++L 
Sbjct: 368 -------PAEYRKMFD-----RLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVNKLH 412

Query: 228 K--------KRGLVVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLIL--YNNNTFA-- 275
           K        K   +      L          + H    +++    Y I   ++++     
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIV--DHYNIPKTFDSDDLIPP 467

Query: 276 ----YVFYWVIS------------NQFETSLLNHWWYQSK 299
               Y FY  I               F    L+  + + K
Sbjct: 468 YLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506



 Score = 30.2 bits (67), Expect = 1.0
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 11/58 (18%)

Query: 1   MLKVFRDVYHMDLNIIQATFLLLTLAIVIVGSLINSLEKHLPKCLIQSFR-YGKFALD 57
            + +FR V+ +D   ++      + A    GS++N          +Q  + Y  +  D
Sbjct: 489 RMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILN---------TLQQLKFYKPYICD 536


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.036
 Identities = 47/329 (14%), Positives = 86/329 (26%), Gaps = 105/329 (31%)

Query: 5   FRDVYHMDLNIIQATFLLLTLAI-VIVGSLINSLEKHLPKC--LIQSFRYGKFALDI--- 58
           F  V ++ L   +  +L     I  +   L+   +  L K   LI+++   +        
Sbjct: 80  FDQVLNLCLTEFENCYLEGN-DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138

Query: 59  --RHSTFVAHLE--------------VPKRYF---QHFY-----IFSSLLSTMAFYL--- 91
              +S     +                   YF   +  Y     +   L+   A  L   
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198

Query: 92  ------CVKTYVLGYEVSPSVMSFLDLLGGSQRRATTSATSVFLC--------IFLITLQ 137
                   K +  G  +    + +L+        + T     +L         I +I L 
Sbjct: 199 IRTTLDAEKVFTQGLNI----LEWLE------NPSNTPDKD-YLLSIPISCPLIGVIQLA 247

Query: 138 CYRRLYETSCVSVFSDSRINISHYIIGHLHYFGTVCGM-----LVEAPGFTRPSFEHRTS 192
            Y    +    +        +  Y+ G      T         +  A   +  SF     
Sbjct: 248 HYVVTAKLLGFTPG-----ELRSYLKG-----ATGHSQGLVTAVAIAETDSWESFFVSVR 297

Query: 193 LDLKDLNVYVLLCACVFLW-------AWVNQYNSARILSE-LRKKRG-----LVV---TY 236
             +  L          F +       A+ N      IL + L    G     L +   T 
Sbjct: 298 KAITVL----------F-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346

Query: 237 DHLLPTGGLFNFVSSPHLFCEALIYLSLY 265
           + +       N     HL     + +SL 
Sbjct: 347 EQVQDYVNKTN----SHLPAGKQVEISLV 371



 Score = 33.1 bits (75), Expect = 0.14
 Identities = 37/225 (16%), Positives = 65/225 (28%), Gaps = 64/225 (28%)

Query: 56  LDIRHSTFVAHLEVPKRYFQHFYI------FSSLLSTMAFYLCVKTYVLGYEVSPS---- 105
           L + H +    L VP      F        F+ +L          T     +  P+    
Sbjct: 9   LTLSHGSLEHVLLVPTA--SFFIASQLQEQFNKILPE-------PTEGFAADDEPTTPAE 59

Query: 106 -VMSFLDLLGGSQRRATTSATSVFLCIFLITLQCYRRLY------ETSCVSVFSDSRINI 158
            V  FL  +         S    F  +  + L  +   Y            +  ++   +
Sbjct: 60  LVGKFLGYVS---SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116

Query: 159 --SHYIIGHLHYFGTVCGMLVEAPGFTRPSFEHRTSLDL------KDLNVYVLLCACVFL 210
             +  +I   +Y          A    +  F+ +++  L       +  +       +F 
Sbjct: 117 VKTKELI--KNYI--------TARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----IF- 160

Query: 211 WAWVN-QYNSARILSELRKKRGLVVTYDHLLPTGGLFNFVSSPHL 254
                 Q N+     ELR    L  TY  L+  G L  F S+  L
Sbjct: 161 ----GGQGNTDDYFEELRD---LYQTYHVLV--GDLIKF-SAETL 195


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,747,003
Number of extensions: 268761
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 14
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.6 bits)