RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3539
         (315 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 29.0 bits (64), Expect = 0.81
 Identities = 22/241 (9%), Positives = 69/241 (28%), Gaps = 17/241 (7%)

Query: 1   MLKVFRDVYHMDLNIIQATFLLLTLAIVIVGSLINSLEKHLPKCLIQSFRYGKFALDIRH 60
           + +   D+  M     +   LL    + +V +  + +     K   +       A+    
Sbjct: 167 LYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLS 226

Query: 61  STFVAHLEVPKRYFQH----FYIFSSLLSTMAFYLCVKTYVLGYEVSPSVMSFLDLLGGS 116
               +     + Y  +     ++   LL  +  Y   +   +   ++  + + L+     
Sbjct: 227 RIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP 286

Query: 117 QRRATTSATSVFLCIFLITLQCYRRLYETS---------CVSVFSDSRINISHYIIGHLH 167
            +      ++    +    +                             N+ +  +  + 
Sbjct: 287 PKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMC 346

Query: 168 YFGTVCGMLVEAPGFTRPSFEHRTSLDLKDLNVYVLLCACVFLWAWVNQYNSARILSELR 227
              +       +    +   E   +    + +V V   A   L+A  ++ N+ +I++E+ 
Sbjct: 347 TLASSE----FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEML 402

Query: 228 K 228
            
Sbjct: 403 S 403


>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 387

 Score = 26.7 bits (59), Expect = 3.5
 Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 22/92 (23%)

Query: 56  LDIRHSTFVAHLEVPKRYFQHFYIFSSL------LSTMAFYLCVKTYVLGYEV------- 102
           L I H      L V K+  Q   +  S       L T  F+ CV+ Y   Y V       
Sbjct: 171 LGISHPISHDLLRVTKQALQ--DVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRG 228

Query: 103 -----SPSVMSFLDLLGGSQRRATTSATSVFL 129
                   +      LG     A  ++ S  L
Sbjct: 229 ANAGDFAGINVIDLTLGLCF--ANEASYSQML 258


>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
           disease virus [TaxId: 11976]}
          Length = 497

 Score = 26.9 bits (59), Expect = 4.1
 Identities = 7/50 (14%), Positives = 16/50 (32%)

Query: 245 LFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLLNHW 294
           L +      L    ++ L  + +   +         + S    TS++N  
Sbjct: 266 LADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSI 315


>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
           yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
           4932]}
          Length = 412

 Score = 26.5 bits (57), Expect = 4.9
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 213 WVNQYNSAR-ILSELRKKRGLVVTYDHLLPTGGLFNFVSSPHLFCEALI 260
             ++    R  L +   K G    +DH++   G+F+F        + L 
Sbjct: 326 MSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLE 374


>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
           scrofa), cytosolic form [TaxId: 9823]}
          Length = 412

 Score = 25.7 bits (55), Expect = 10.0
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 209 FLWAWVNQYNSAR-ILSELRKKRGLVVTYDHLLPTGGLFNFVSSPHLFCEALI 260
            +    ++  S R  L    +      T++H+    G+F+F        E LI
Sbjct: 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLI 374


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,195,382
Number of extensions: 53809
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 12
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.9 bits)